BAC Information

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BAC

Clone NameB6Ng01-062A14
ChromosomeX (Build37)18 (Build37)
Map Location 36,339,066 - 36,339,58158,518,599 - 58,519,708
singlet/doubletsingletsinglet
Overlap geneLOC670539
Upstream gene4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171
Downstream geneLOC100039700, 1700085A12Rik, LOC100039715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062A14.bB6Ng01-062A14.g
ACCDH882552DH882553
length1,1451,099
definitionDH882552|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A14, 5' end.DH882553|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,339,066 - 36,339,581)(58,518,599 - 58,519,708)
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggttaagattaaaaattccggtgacagt
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcagttttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccagaggatcccacaatacctctcctgggc
atatatccagaagctgtcccaaccggtaagaaggacacatgctccactat
gttcatagcaaccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatataaaaaatgtggtatatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcataaa
agaactcaaatgatatgtactcactgataagtggatattagcccagaaac
ttagtatacccgagatacaagatacaatttgcaaaacacatgaaactgaa
aaagaaggaagaccaaagtgtggacactttgccccttcttagaactggaa
agaatcacccatgcaaggagttacagagacaaagtttggagctgagacaa
aaggatggaccatctagagactgccatatccagagatccatcccataaat
agcctccaaaggatgacaccatggcatacactagtaagattttgctgaaa
ggacccagatatagttgtctcttgtgagactaggccagggcctagcaaac
acagaagtggatgctcatagtcagctattggatggatcacagggccccaa
tggagagctagagaaagtaaccaagagctaaagggatctgcaccctatag
gtagacacattatgactacagtaccctggactcttgactctagctacata
tgtatcaaagatggcctagtggcatcactggaagagaggccatgaaccgc
actttatatgctcactacaggatgcaggtcaaaaaaaaaaaaatg
gaattctttttgacggagctatttgagatgatttaacctaagaagcatgt
taatagtattgtaacaatgttgacttttaagttgataattacaatgcagc
cttccaagatgttaaaattgaagcaatagtggtataataggttgaatggt
agctctataaagataagtccaaatctaatttttagtagctgcctgtaaat
tttgaccttttgcaaatagaatatttgtatggatgtaactagggatctag
aaatgaagtaattttggattgaaggcacacacaatatccaaagactaaca
tccttaataaaagaagggaaagaagatctgagacactgctgtagaagatg
agggctgaagggatgcccatttgaaagcatgattcagaggcaagtgtctg
tacaccaaggattttgaaggcttgctgatcagagaatgaggataaggttg
tctctcagagtttatgcaaggaagttactcaggcaacccttcattttcac
actcttggcccctgcttcaaggcaatagtttttcaatggtcctaggctcc
tagtttgcaggtctttgttatgagccttaggaaataaatatgctaaatag
gaagacactcagatacagtgcggcatacataaatgcacctaagaaagtga
aaccctcaagttcaatgcaatgtgtccgttcatccaaaaccctctcttac
tgtaagaagcctttctttagcaacataaaattttgcctgaaaattttaaa
gtgtttctgaaataaaacatacaaaggaacgctgtcgagaccagcgctat
tcagcttgctttcacaaacagcaacagagtcattgggaaagaggtggagt
tctcacaaggggcctttcccataggtctcctcactcggctcagtgcaaga
tcatttgacctgcctgattctctcactgtgatgacactgtaggcctacaa
acacaggacataaggactagaacaaaaactagtagctcatcagagattga
caggctactacatgtaagacagagaccactcctgctgctaccagtgacca
tatgattggactctaagtcagtgtctacttgttccatggagtgccacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_36339066_36339581
seq2: B6Ng01-062A14.b_836_1189 (reverse)

seq1  CATTTTTTTTTTTTTGAGTGAAATTTTTATTTTTATTTTTTCCTTTTCCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCCCATACCCACCCACCCCCACTCCCCTACACACCCACTCCCCCGTTT  150
                                           || |      |||
seq2  -------------------------------------CATTTTTTTTTTT  13

seq1  TTGGCCTTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAA  200
      ||| |||  || |   |||||| | | ||||||||||  |||| || || 
seq2  TTGACCT--GCAT---CCTGTAGT-GAGCATATAAAG--TGCG-GTTCA-  53

seq1  TGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATAT  250
        |||||||| |||||||||||  | ||||||||||| ||||||||||||
seq2  -TGGCCTCTC-TTCCAGTGATG--CCACTAGGCCATC-TTTGATACATAT  98

seq1  GCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTC  300
      | ||||||||||||||| ||| ||||||||  ||| |||||||||   ||
seq2  GTAGCTAGAGTCAAGAG-TCCAGGGTACTG--TAG-TCATAATGT--GTC  142

seq1  CACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCT  350
       |||||||||| ||||||||||||||||| ||||| ||||||||||||||
seq2  TACCTATAGGG-TGCAGATCCCTTTAGCT-CTTGGTTACTTTCTCTAGCT  190

seq1  CCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCA  400
       |||||||||| ||||||||||||||||| ||||||||| ||||||||||
seq2  -CTCCATTGGG-GCCCTGTGATCCATCCAATAGCTGACTATGAGCATCCA  238

seq1  CTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACAGCTACATC  450
      |||||||||||||||||||||||| ||||||||||||||||| ||| |||
seq2  CTTCTGTGTTTGCTAGGCCCTGGCCTAGTCTCACAAGAGACAACTATATC  288

seq1  TGGGTCCTTTCGATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTT  500
      |||||||||||   |||||||| ||||||||||| ||||||||| | |||
seq2  TGGGTCCTTTCAGCAAAATCTTACTAGTGTATGCCATGGTGTCATCCTTT  338

seq1  GGATGCTGATTATGGG  516
      ||| |||  |||||||
seq2  GGAGGCTATTTATGGG  354

seq1: chr18_58518599_58519708
seq2: B6Ng01-062A14.g_69_1167 (reverse)

seq1  TTGTGGCCAACTCCATGGAAACAAGTAGGCACCTGGACTTAGAGTCCCAA  50
      |||||||  ||||||||| ||||||||| |||   |||||||||| ||||
seq2  TTGTGGC--ACTCCATGG-AACAAGTAGACAC--TGACTTAGAGT-CCAA  44

seq1  TCATATGGTCAACCTGGTAGCCAGCA-GAGTGGTCTCTGTCTTACATGGT  99
      |||||||||||  ||||||| ||||| |||||||||||||||||||| ||
seq2  TCATATGGTCA--CTGGTAG-CAGCAGGAGTGGTCTCTGTCTTACAT-GT  90

seq1  GGTGGCCTGTCAATCTCTTGATGGGCTACTAGTTTTTGTTCTAGTCCTTA  149
       || ||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  AGTAGCCTGTCAATCTC-TGATGAGCTACTAGTTTTTGTTCTAGTCCTTA  139

seq1  TGTCCTTGTGTTTGTAGGCCTACAGTGTCATCACAGTGAGAGAATCAGGC  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCC-TGTGTTTGTAGGCCTACAGTGTCATCACAGTGAGAGAATCAGGC  188

seq1  AGGTCAAATGATCTTGCACTGAGCCGAGTGAGGAGACCTATGGGAAAGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAATGATCTTGCACTGAGCCGAGTGAGGAGACCTATGGGAAAGGC  238

seq1  CCCTTGTGAGAACTCCACCTCTTTCCCAATGACTCTGTTGCTGTTTGTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTGAGAACTCCACCTCTTTCCCAATGACTCTGTTGCTGTTTGTGA  288

seq1  AAGCAAGCTGAATAGCGCTGGTCTCGACAGCGTTCCTTTGTATGTTTTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCTGAATAGCGCTGGTCTCGACAGCGTTCCTTTGTATGTTTTAT  338

seq1  TTCAGAAACACTTTAAAATTTTCAGGCAAAATTTTATGTTGCTAAAGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAACACTTTAAAATTTTCAGGCAAAATTTTATGTTGCTAAAGAAA  388

seq1  GGCTTCTTACAGTAAGAGAGGGTTTTGGATGAACGGACACATTGCATTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTACAGTAAGAGAGGGTTTTGGATGAACGGACACATTGCATTGA  438

seq1  ACTTGAGGGTTTCACTTTCTTAGGTGCATTTATGTATGCCGCACTGTATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGGGTTTCACTTTCTTAGGTGCATTTATGTATGCCGCACTGTATC  488

seq1  TGAGTGTCTTCCTATTTAGCATATTTATTTCCTAAGGCTCATAACAAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTCTTCCTATTTAGCATATTTATTTCCTAAGGCTCATAACAAAGA  538

seq1  CCTGCAAACTAGGAGCCTAGGACCATTGAAAAACTATTGCCTTGAAGCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAACTAGGAGCCTAGGACCATTGAAAAACTATTGCCTTGAAGCAG  588

seq1  GGGCCAAGAGTGTGAAAATGAAGGGTTGCCTGAGTAACTTCCTTGCATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAGAGTGTGAAAATGAAGGGTTGCCTGAGTAACTTCCTTGCATAA  638

seq1  ACTCTGAGAGACAACCTTATCCTCATTCTCTGATCAGCAAGCCTTCAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGAGACAACCTTATCCTCATTCTCTGATCAGCAAGCCTTCAAAA  688

seq1  TCCTTGGTGTACAGACACTTGCCTCTGAATCATGCTTTCAAATGGGCATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGTGTACAGACACTTGCCTCTGAATCATGCTTTCAAATGGGCATC  738

seq1  CCTTCAGCCCTCATCTTCTACAGCAGTGTCTCAGATCTTCTTTCCCTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCCCTCATCTTCTACAGCAGTGTCTCAGATCTTCTTTCCCTTCT  788

seq1  TTTATTAAGGATGTTAGTCTTTGGATATTGTGTGTGCCTTCAATCCAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAGGATGTTAGTCTTTGGATATTGTGTGTGCCTTCAATCCAAAA  838

seq1  TTACTTCATTTCTAGATCCCTAGTTACATCCATACAAATATTCTATTTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCATTTCTAGATCCCTAGTTACATCCATACAAATATTCTATTTGC  888

seq1  AAAAGGTCAAAATTTACAGGCAGCTACTAAAAATTAGATTTGGACTTATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCAAAATTTACAGGCAGCTACTAAAAATTAGATTTGGACTTATC  938

seq1  TTTATAGAGCTACCATTCAACCTATTATACCACTATTGCTTCAATTTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGAGCTACCATTCAACCTATTATACCACTATTGCTTCAATTTTAA  988

seq1  CATCTTGGAAGGCTGCATTGTAATTATCAACTTAAAAGTCAACATTGTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGGAAGGCTGCATTGTAATTATCAACTTAAAAGTCAACATTGTTA  1038

seq1  CAATACTATTAACATGCTTCTTAGGTTAAATCATCTCAAATAGCTCCGTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTATTAACATGCTTCTTAGGTTAAATCATCTCAAATAGCTCCGTC  1088

seq1  AAAAAGAATTC  1110
      |||||||||||
seq2  AAAAAGAATTC  1099