BAC Information

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BAC

Clone NameB6Ng01-062M23
Chromosome18 (Build37)
Map Location 9,998,890 - 10,134,347
singlet/doubletdoublet
Overlap geneUsp14, Rock1
Upstream geneFzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1
Downstream geneLOC100039978, LOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062M23.bB6Ng01-062M23.g
ACCDH883090DH883091
length1,0281,139
definitionDH883090|Mus musculus domesticus DNA, BAC clone: B6Ng01-062M23, 5' end.DH883091|Mus musculus domesticus DNA, BAC clone: B6Ng01-062M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,133,322 - 10,134,347)(9,998,890 - 10,000,051)
sequence
gaattcactaaccatgggccctggaaagagctcagtggttaagggcagtg
gctgctcttccagaggtcctgagttcaatccccagcaaccacatggtggc
tcacaaccatctagcaggtgtatatgcagatggagcactcacatgtactc
atagacataaaaataaataaatcgctggtcgtggtggcgcatgcctttga
tcccagcacttgggaggcagaggcaggtggatttctgagttctaggccag
cctggtctacaaagtgagttccaggacagccagggctatacagagaaacc
ctgtcttgaaaaacaaaaaacaaaaataaataaatcttaaaaaacaacaa
caaaaaaagaatttactaaccagctgggtggtggtggtggtggtgctcgc
ctttaatcctagtccttgggtggcagagacaggtggatctctgagttcga
ggccagcctggtttaccgaattccaggacagccattggtacacagaaacc
tgtctcaaaaaacaaaacaaacaagagaattcactggatttgttcagaat
cactgtgaccatatttgttgttcttaacaccatagtttcagtgttgtatt
cataactagtcagtagtttactctttctatttagggcaaatgtagattgc
cagattgactaacactttcataacaactcattatacacattactggtaac
tagaaatggaattaatgtaaatgtcactaagtgttaaaattaagaccgac
ataaaagttagatttagatgtcttagaaatattttatggaagactttagt
tgtcttctcttgacatataaaatttttgtcactcagtttaaaagtgagct
gtaagagagattatacactcactggtttctgtatttatacacacagctgg
aaggaaaatgctactttttttctttggttgtaaaggcttatgtatttcac
aacagaatagctaggaatgttgtagtatcggttttgaaagaatattaaaa
ggaagtattacttgcaaccaagtgtgtc
gaattccaggacagccagggctacacagagaaaccctgtctcaaaaaaca
aaaacaaaaaaagaagaaaacaattctacaaagtctgtttgaacaatagg
ttaaaaaaaaaaagacaatagctcaggatggaagatcagcaccaacaaag
caagtgatgccacttgcagaaggactgaaaagagcaaacttgagatcaca
agtccagtctttataaggaacctgcattaggtatgggtaatattgtggca
caagcctgaaaaccaagcactttggaggtctggagtcaggaggataccct
caactatctagcaaattcatggctagcctggaccccatgaatcccatctt
ataaaacaaaaacaatgtagtatggccaaagaacagacatacaaataatt
ggaatagaattgaaaacttcataaacacattcacatctactgtcaaccaa
ttatctataaagatgccagaataattcaactggaaaatagtaggtttcac
tttttgtttgtttgtttgtttaatatcctggagatctggataatcatacc
cgaaagaatggatctgaacatcttatcacacagaaattaaatgaatcaaa
atacctaaagaaactatcaaattcttaaactttcttctctgccacaagga
gcatgaagagataaaattacagactttgagaaaaatacttgcaatctgca
tagctaagaattacaatctacaacagaatagaaagttcagcagaggacac
acagggcaaccaaaacatgaaaaacagtatcattaaggtagtaccacaaa
cttatccatcagctcaaatgaaacctagtaacaacagcaacagctgctca
gctcagagcacgagtcagttaggcagtgctcacaggaatataaagcaagt
atcatttggcactttcttgacaaactgggcatttaccacatgcacatagc
aattacacttttggacattcatttcagaaaattaaactcctgcttacact
aatttctgcaataaacatttatcagcttatcataatagacatactgaaaa
tatgtgtcactaacagggatggtttactaagaatgccgacaagaaatact
attcaggagcaacatactactgacatacaactggatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_10133322_10134347
seq2: B6Ng01-062M23.b_49_1076 (reverse)

seq1  GACACACTAGTTTGCATGTAATGCTTCCTTTTAATATATCTTTCAAAA-C  49
      |||||||| | ||||| ||||| |||||||||||||| |||||||||| |
seq2  GACACACTTGGTTGCAAGTAATACTTCCTTTTAATAT-TCTTTCAAAACC  49

seq1  GATAACTAC-ACATTTCTAGCTATTCTGTTGTGAAATACATAAGCCTTTA  98
      ||| ||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  GAT-ACTACAACATTCCTAGCTATTCTGTTGTGAAATACATAAGCCTTTA  98

seq1  CAACCAAAGAAAAAAGGTAGCATTTTCCTTCCAGCTGTGTGTATAAATTA  148
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  CAACCAAAGAAAAAAAGTAGCATTTTCCTTCCAGCTGTGTGTATAAA-TA  147

seq1  CAGAAA-CAGTGAGTGTTAAGTCTCTCTTACAGCTCACTTTTAAACTGAG  197
      |||||| ||||||||||  | |||||||||||||||||||||||||||||
seq2  CAGAAACCAGTGAGTGTATAATCTCTCTTACAGCTCACTTTTAAACTGAG  197

seq1  TGAC-AAAATTTTATATGTCAAGAGAAGACAACTAAAGTCTT-CATAAAA  245
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGACAAAAATTTTATATGTCAAGAGAAGACAACTAAAGTCTTCCATAAAA  247

seq1  TATTTCTAAGACATCTAAATCTAACTTTTATGTCGGTCTTAATTTTAACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAAGACATCTAAATCTAACTTTTATGTCGGTCTTAATTTTAACA  297

seq1  CTTAGTGACATTTACATTAATTCCATTTCTAGTTACCAGTAATGTGTATA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGACATTTACATTAATTCCATTTCTAGTTACCAGTAATGTGTATA  347

seq1  ATGAGTTGTTATGAAAGTGTTAGTCAATCTGGCAATCTACATTTGCCCTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTGTTATGAAAGTGTTAGTCAATCTGGCAATCTACATTTGCCCTA  397

seq1  AATAGAAAGGGTAAACTACTGACTAGTTATGAATACAACACTGAAACTAT  445
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAGAGTAAACTACTGACTAGTTATGAATACAACACTGAAACTAT  447

seq1  GGTGTTAAGAACAACAAATATGGTCACAGTGATTCTGAACAAATCCAGTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTAAGAACAACAAATATGGTCACAGTGATTCTGAACAAATCCAGTG  497

seq1  AATTCTCTTGTTTGTTTTGTTTTTTGAGACAGGTTTCTGTGTACCAATGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTTGTTTGTTTTGTTTTTTGAGACAGGTTTCTGTGTACCAATGG  547

seq1  CTGTCCTGGAATTCGGTAAACCAGGCTGGCCTCGAACTCAGAGATCCACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAATTCGGTAAACCAGGCTGGCCTCGAACTCAGAGATCCACC  597

seq1  TGTCTCTGCCACCCAAGGACTAGGATTAAAGGCGAGCACCACCACCACCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGCCACCCAAGGACTAGGATTAAAGGCGAGCACCACCACCACCA  647

seq1  CCACCCAGCTGGTTAGTAAATTCTTTTTTTGTTGTTGTTTTTTAAGATTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAGCTGGTTAGTAAATTCTTTTTTTGTTGTTGTTTTTTAAGATTT  697

seq1  ATTTATTTTTGTTTTTTGTTTTTCAAGACAGGGTTTCTCTGTATAGCCCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTGTTTTTTGTTTTTCAAGACAGGGTTTCTCTGTATAGCCCT  747

seq1  GGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTAGAACTCAGAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTAGAACTCAGAAA  797

seq1  TCCACCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGCATGCGCCACCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGCATGCGCCACCA  847

seq1  CGACCAGCGATTTATTTATTTTTATGTCTATGAGTACATGTGAGTGCTCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCAGCGATTTATTTATTTTTATGTCTATGAGTACATGTGAGTGCTCC  897

seq1  ATCTGCATATACACCTGCTAGATGGTTGTGAGCCACCATGTGGTTGCTGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATATACACCTGCTAGATGGTTGTGAGCCACCATGTGGTTGCTGG  947

seq1  GGATTGAACTCAGGACCTCTGGAAGAGCAGCCACTGCCCTTAACCACTGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAACTCAGGACCTCTGGAAGAGCAGCCACTGCCCTTAACCACTGA  997

seq1  GCTCTTTCCAGGGCCCATGGTTAGTGAATTC  1026
      |||||||||||||||||||||||||||||||
seq2  GCTCTTTCCAGGGCCCATGGTTAGTGAATTC  1028

seq1: chr18_9998890_10000051
seq2: B6Ng01-062M23.g_69_1207

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACA  50

seq1  AAAACAAAAAAAGAAGAAAACAATTCTACAAAGTCTGTTTGAACAATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAAAGAAGAAAACAATTCTACAAAGTCTGTTTGAACAATAGG  100

seq1  TTAAAAAAAAAAAGACAATAGCTCAGGATGGAAGATCAGCACCAACAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAGACAATAGCTCAGGATGGAAGATCAGCACCAACAAAG  150

seq1  CAAGTGATGCCACTTGCAGAAGGACTGAAAAGAGCAAACTTGAGATCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGATGCCACTTGCAGAAGGACTGAAAAGAGCAAACTTGAGATCACA  200

seq1  AGTCCAGTCTTTATAAGGAACCTGCATTAGGTATGGGTAATATTGTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGTCTTTATAAGGAACCTGCATTAGGTATGGGTAATATTGTGGCA  250

seq1  CAAGCCTGAAAACCAAGCACTTTGGAGGTCTGGAGTCAGGAGGATACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGAAAACCAAGCACTTTGGAGGTCTGGAGTCAGGAGGATACCCT  300

seq1  CAACTATCTAGCAAATTCATGGCTAGCCTGGACCCCATGAATCCCATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATCTAGCAAATTCATGGCTAGCCTGGACCCCATGAATCCCATCTT  350

seq1  ATAAAACAAAAACAATGTAGTATGGCCAAAGAACAGACATACAAATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAAAAACAATGTAGTATGGCCAAAGAACAGACATACAAATAATT  400

seq1  GGAATAGAATTGAAAACTTCATAAACACATTCACATCTACTGTCAACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGAATTGAAAACTTCATAAACACATTCACATCTACTGTCAACCAA  450

seq1  TTATCTATAAAGATGCCAGAATAATTCAACTGGAAAATAGTAGGTTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATAAAGATGCCAGAATAATTCAACTGGAAAATAGTAGGTTTCAC  500

seq1  TTTTTGTTTGTTTGTTTGTTTAATATCCTGGAGATCTGGATAATCATACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTGTTTGTTTGTTTAATATCCTGGAGATCTGGATAATCATACC  550

seq1  CGAAAGAATGGATCTGAACATCTTATCACACAGAAATTAAATGAATCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGAATGGATCTGAACATCTTATCACACAGAAATTAAATGAATCAAA  600

seq1  ATACCTAAAGAAACTATCAAATTCTTAAACTTTCTTCTCTGCCACAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAAAGAAACTATCAAATTCTTAAACTTTCTTCTCTGCCACAAGGA  650

seq1  GCATGAAGAGATAAAATTACAGACTTTGAGAAAAATACTTGCAATCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAGAGATAAAATTACAGACTTTGAGAAAAATACTTGCAATCTGCA  700

seq1  TAGCTAAGAATTACAATCTACAACAGAATAGAAAGTTCAGCAGAGGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAGAATTACAATCTACAACAGAATAGAAAGTTCAGCAGAGGACAC  750

seq1  ACAGGGCAACCAAAACATGAAAAACAGTATCATTAAGGTAGTACCACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCAACCAAAACATGAAAAACAGTATCATTAAGGTAGTACCACAAA  800

seq1  CTTATCCATCAGCTCAAATGAAACCTAGTAACAACAGCAACAGCTGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCATCAGCTCAAATGAAACCTAGTAACAACAGCAACAGCTGCTCA  850

seq1  GCTCAGAGCACGAGTCAGTTAGGCAGTGCTCACAGGAATATAAAGCAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGCACGAGTCAGTTAGGCAGTGCTCACAGGAATATAAAGCAAGT  900

seq1  ATCATTTGGCACTTTCTTGACAAACTGGGCATTTACCACCATGCAACATA  950
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  ATCATTTGGCACTTTCTTGACAAACTGGGCATTTACCA-CATGC-ACATA  948

seq1  GCAATTACACTTTTGGACATTCATTTCAGAAAAATTAAACTCCTGCTTAC  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCAATTACACTTTTGGACATTCATTTCAG-AAAATTAAACTCCTGCTTAC  997

seq1  ACTAATTTCTGCAAATAAACATTTATCAGCTTTATTCATAATAGACAATA  1050
      |||||||||||| |||||||||||||||||||   ||||||||||||   
seq2  ACTAATTTCTGC-AATAAACATTTATCAGCTT--ATCATAATAGACA--T  1042

seq1  ACTGAAAATAATGTGTCACTTAACAGGGGAATGGTTTAACTACAGAATGC  1100
      ||||||||| ||||||||| ||||||||  ||||||| |||| |||||||
seq2  ACTGAAAAT-ATGTGTCAC-TAACAGGG--ATGGTTT-ACTA-AGAATGC  1086

seq1  CCAGACAAGGAAATACTATTCAGGAGCAAAACATAACTACTGACATACAA  1150
      |  ||||| ||||||||||||||||||  ||||| |||||||||||||||
seq2  C--GACAA-GAAATACTATTCAGGAGC--AACAT-ACTACTGACATACAA  1130

seq1  AACCTGGATGAC  1162
         |||||||||
seq2  ---CTGGATGAC  1139