BAC Information

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BAC

Clone NameB6Ng01-066I09
Chromosome18 (Build37)
Map Location 10,855,017 - 10,996,793
singlet/doubletdoublet
Overlap geneLOC665296
Upstream geneColec12, LOC100039787, EG433161, Thoc1, Usp14, Rock1, LOC100039978, LOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1
Downstream gene1010001N08Rik, Gata6, LOC665310, LOC100040148, Rbbp8, LOC621998
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066I09.bB6Ng01-066I09.g
ACCDH885678DH885679
length924324
definitionDH885678|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I09, 5' end.DH885679|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,855,017 - 10,855,946)(10,996,468 - 10,996,793)
sequence
gaattcattgtttttaatagctgagtagtactccattgtgtaaatgtacc
acattttctgtatccattcctctgttgaaggacatctgggttctttctag
cttctggctattataaataaggctgctttgaacatagtggagcatgtgtc
cttgttatatgttggagcatcttttgggtatatgcccaggagtggtatag
ctgggtcctcacatagtaatatgtccaattttctgagggaccaccagact
tatttctagagtagttagttgtaccagcttgcaatcccaccaacaatgga
ttcagttattgtcttgtgcaggagacttgggcaggagaatagtctcctga
aggctagcctgggctatagagtaaaagaccttgtctcaactctccccatc
cttcccataaaagactcagcaaacaaagctaaaacaaaagaatgtttttc
tttgaggtatcttaagataagggcccgtgtgatggctcagtgggtaaagg
cgcttgtttcataagtctcaccacccagcctgattcctgaaaaccatgaa
atgggggggaggagtggaccaactccataaagttgtgctttgatcataca
tgtgccctgtgccctgcctccctgtaatgcgcacatacacaataataaat
gaaattttagaaagtttaagagcaaataaattctagattttggtgaaaat
tggcaaaacttcagtagtccaatgactatacagctgtgtataagaaagcc
tgtctcaaagaaagttactcatggtagcacccctgccactctcttactgg
ggtggtacaggccatacattcagtagttcaaggccagcagtggcttatta
gtaagcttgttgccaacctgagctattgacattctgtctaaaaaaaaaaa
aaaaaaaactaaacaaaaaacaaa
tctgtagataaagaaaactgagttactaatcatggacattctattcctgg
tatttatgggttttgtttggttttgtttttttaatgccgaggaaacagca
ggcaataggaggggatgtgatatttaagctggtattgagtatctattatg
gtaggcaagagctatatccctaagctgtccattggagctgcatactcagt
cttaaaaaaaaaaaagtaaaaagaaaaaaatgtgcccaagaaggctgagc
agtaactgctgctaatgcttttgattctctctctctctctctctctctct
ctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_10855017_10855946
seq2: B6Ng01-066I09.b_39_962

seq1  GAATTCATTGTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACC  50

seq1  ACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTGGGTTCTTTCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTGGGTTCTTTCTAG  100

seq1  CTTCTGGCTATTATAAATAAGGCTGCTTTGAACATAGTGGAGCATGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTTTGAACATAGTGGAGCATGTGTC  150

seq1  CTTGTTATATGTTGGAGCATCTTTTGGGTATATGCCCAGGAGTGGTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATATGTTGGAGCATCTTTTGGGTATATGCCCAGGAGTGGTATAG  200

seq1  CTGGGTCCTCACATAGTAATATGTCCAATTTTCTGAGGGACCACCAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCTCACATAGTAATATGTCCAATTTTCTGAGGGACCACCAGACT  250

seq1  TATTTCTAGAGTAGTTAGTTGTACCAGCTTGCAATCCCACCAACAATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAGAGTAGTTAGTTGTACCAGCTTGCAATCCCACCAACAATGGA  300

seq1  TTCAGTTATTGTCTTGTGCAGGAGACTTGGGCAGGAGAATAGTCTCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTATTGTCTTGTGCAGGAGACTTGGGCAGGAGAATAGTCTCCTGA  350

seq1  AGGCTAGCCTGGGCTATAGAGTAAAAGACCTTGTCTCAACTCTCCCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGCCTGGGCTATAGAGTAAAAGACCTTGTCTCAACTCTCCCCATC  400

seq1  CTTCCCATAAAAGACTCAGCAAACAAAGCTAAAACAAAAGAATGTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCATAAAAGACTCAGCAAACAAAGCTAAAACAAAAGAATGTTTTTC  450

seq1  TTTGAGGTATCTTAAGATAAGGGCCCGTGTGATGGCTCAGTGGGTAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGTATCTTAAGATAAGGGCCCGTGTGATGGCTCAGTGGGTAAAGG  500

seq1  CGCTTGTTTCATAAGTCTCACCACCCAGCCTGATTCCTGAAAACCATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGTTTCATAAGTCTCACCACCCAGCCTGATTCCTGAAAACCATGAA  550

seq1  ATGGGGGGGAGGAGTGGACCAACTCCATAAAGTTGTGCTTTGATCATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGGGAGGAGTGGACCAACTCCATAAAGTTGTGCTTTGATCATACA  600

seq1  TGTGCCCTGTGCCCTGCCTCCCTGTAATGCGCACATACACAATAATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTGTGCCCTGCCTCCCTGTAATGCGCACATACACAATAATAAAT  650

seq1  GAAATTTTAGAAAGTTTAAGAGCAAATAAATTCTAGATTTTGGTGAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTAGAAAGTTTAAGAGCAAATAAATTCTAGATTTTGGTGAAAAT  700

seq1  TGGCAAAACTTCAGTAGTCCAATGACTATACAGCTGTGTATAAGAAAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAACTTCAGTAGTCCAATGACTATACAGCTGTGTATAAGAAAGCC  750

seq1  TGTCTCAAAGAAAGTTACTCATGGTAGCACCCCTGCCACTCTCTTACTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAGAAAGTTACTCATGGTAGCACCCCTGCCACTCTCTTACTGG  800

seq1  GGTGGTACAGGCCATACATTCAGTAGTTCAAGGCCAGCAGTGGCTTATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTACAGGCCATACATTCAGTAGTTCAAGGCCAGCAGTGGCTTATTA  850

seq1  GTAAGCTTGTTGCCAACCTGAGCTATATGACATTCTGTCTAAAAAAAAAA  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTAAGCTTGTTGCCAACCTGAGCTAT-TGACATTCTGTCTAAAAAAAAAA  899

seq1  AAAAAAAAAAAAACAAAAACAAAAAACAAA  930
      |||||||||       ||||||||||||||
seq2  AAAAAAAAA-----CTAAACAAAAAACAAA  924

seq1: chr18_10996468_10996793
seq2: B6Ng01-066I09.g_68_393 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCAA  50

seq1  AAGCATTAGCAGCAGTTACTGCTCAGCCTTCTTGGGCACATTTTTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTAGCAGCAGTTACTGCTCAGCCTTCTTGGGCACATTTTTTTCTT  100

seq1  TTTACTTTTTTTTTTTTAAGACTGAGTATGCAGCTCCAATGGACAGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTTTTTTTTTAAGACTGAGTATGCAGCTCCAATGGACAGCTTA  150

seq1  GGGATATAGCTCTTGCCTACCATAATAGATACTCAATACCAGCTTAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATAGCTCTTGCCTACCATAATAGATACTCAATACCAGCTTAAATA  200

seq1  TCACATCCCCTCCTATTGCCTGCTGTTTCCTCGGCATTAAAAAAACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCCCTCCTATTGCCTGCTGTTTCCTCGGCATTAAAAAAACAAAA  250

seq1  CCAAACAAAACCCATAAATACCAGGAATAGAATGTCCATGATTAGTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAAACCCATAAATACCAGGAATAGAATGTCCATGATTAGTAACT  300

seq1  CAGTTTTCTTTATCTACAGAGAATTC  326
      ||||||||||||||||||||||||||
seq2  CAGTTTTCTTTATCTACAGAGAATTC  326