BAC Information

Click to search

BAC

Clone NameB6Ng01-067I17
Chromosome18 (Build37)
Map Location 47,927,426 - 48,058,319
singlet/doubletdoublet
Overlap geneLOC100042982, LOC100042284
Upstream geneAp3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325
Downstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067I17.bB6Ng01-067I17.g
ACCDH886401DH886402
length1,1531,089
definitionDH886401|Mus musculus domesticus DNA, BAC clone: B6Ng01-067I17, 5' end.DH886402|Mus musculus domesticus DNA, BAC clone: B6Ng01-067I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,927,426 - 47,928,598)(48,057,214 - 48,058,319)
sequence
gaattcaatagaaacccagctctcattctgaggaccatttaaacagaggt
accgactagacattttaatagttgaaaactgttgtatcttgaattgaaaa
attgatttacagtagattttaatgctcccagcaaaagatttttggcattt
tatatccctctgtttgtcactcttgtgcagtgacacagccatgaatcttg
gctatagctccatttccagttaatatagacgctctatatgtaatcttggt
ctcctctctcttctggaaattgaaaacatagtaaaagcaatcaaaaagtt
tttgtaaagtaaaaataccaaaagtagtcataatagcacatcttgtgtgc
tgaaagatattaaccacctttgtggcaggcacagtgagtttaaggtgtac
gtggcaattgaccattgcatttctagttaacatggctttcaatattttcc
cttactgctccaggaaatactatttgtcattaaagtttcaaaataattga
agctcccctctgttgtaagaaataatagaagaatcatatctgtcattatt
tctttcactgtactatactataaatccgtagctctctttcctaatctggg
tatctacattgacacagtgaagataagagtcatctacatgactccttatt
gtccaattgtgcccgttggtcactagacattattaatctcattttccatg
tctaattttgtcatctaaagaaggccatacatagattcacttagaataga
tagctttttgaacttagcctttttcactgagataaatttttgagaaactt
atgcaggttgttttgtgtgtcagagttttatttcatttcatttaatgctg
attaatgttccatggtgtagatgaaaattagaatgtttaagtatttacct
gttgaaggtacctggatgattctgttttaagctattgtgagttagctgct
atagacgttcatgcataggtctttgtgggcaagatcctttttcattttga
ggatatatatggaggacaatgcctgatctacatgcacgtttattttcaaa
gtacgtcaatcagtcttcatagtagctgtaccatttcatcttccatagaa
tatctattgttccttacatagggatgggtaattagcttccctgtgctcac
tgg
gaattccttacacgaaacccaagacctaaggaataagatgtgaatgttga
gcaccaagaccagaattttcttctggtgaaggaaagagaagcttctgccc
ctcagctacactttgaggtctgtgttattttgactggcacgcttccggcg
gtagcgacacaagacagcctgtagtgtgtacatgtaaattcttaatctgt
cttggaatttcatttttatcattgatgtggatcacaacgatgtttttaaa
atatcattgccatttaataacaaagtcatattaaaagataaatttgtact
aaaccaaagtatctctcaatttaaagtccggttaccaatcaataacagtt
cactaaaactgatcaagtatattttggcacccaaagcacagtgcctcgtc
cttaaatctactctttattggtcctacttaaactttaaccagtctggtga
cctcttcaactttcaagttgcccttaagttgatcctaactgatggtaatg
ttctgttgcaaggactgactgactgtggctggcccaggtgactccttggg
gtcactgaaattcatgtccccaggaagtgaaatcaggagtcggatcatca
aagaggaagaccccaaactatgcttggtgaattgattcttctagtacctg
ggtgtgtgcaaagagcctccggaacattaataactctagaatagttgtct
tccatgtgtatttttttccctgagtacttcttggtgtaagcagagtagcc
agccttgataacagaatgaaaagcattatttgggaggagactcaaaagct
tgtcagagggaaaggagctgagtccatccctgaggaagtgggaactgtat
gtaagagtgtcctgacagtagggtggcttcaaatgttgtcacagttccta
gagctatttttctagtgcttgtcaccagaattcgacttaccatccacaaa
cacttccacttaatagtcacatactttgatttctttcattctacctcata
aaatgatcaggcagcactttttcattggcaatagcatctttatgaccgaa
tgaatataaccctggagaaaataaacttagctaaagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_47927426_47928598
seq2: B6Ng01-067I17.b_43_1195

seq1  GAATTCAATAGAAACCCAGCTCTCATTCTGAGGACCATTTAAACAGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGAAACCCAGCTCTCATTCTGAGGACCATTTAAACAGAGGT  50

seq1  ACCGACTAGACATTTTAATAGTTGAAAACTGTTGTATCTTGAATTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGACTAGACATTTTAATAGTTGAAAACTGTTGTATCTTGAATTGAAAA  100

seq1  ATTGATTTACAGTAGATTTTAATGCTCCCAGCAAAAGATTTTTGGCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTACAGTAGATTTTAATGCTCCCAGCAAAAGATTTTTGGCATTT  150

seq1  TATATCCCTCTGTTTGTCACTCTTGTGCAGTGACACAGCCATGAATCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCCTCTGTTTGTCACTCTTGTGCAGTGACACAGCCATGAATCTTG  200

seq1  GCTATAGCTCCATTTCCAGTTAATATAGACGCTCTATATGTAATCTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGCTCCATTTCCAGTTAATATAGACGCTCTATATGTAATCTTGGT  250

seq1  CTCCTCTCTCTTCTGGAAATTGAAAACATAGTAAAAGCAATCAAAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCTCTTCTGGAAATTGAAAACATAGTAAAAGCAATCAAAAAGTT  300

seq1  TTTGTAAAGTAAAAATACCAAAAGTAGTCATAATAGCACATCTTGTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAGTAAAAATACCAAAAGTAGTCATAATAGCACATCTTGTGTGC  350

seq1  TGAAAGATATTAACCACCTTTGTGGCAGGCACAGTGAGTTTAAGGTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATATTAACCACCTTTGTGGCAGGCACAGTGAGTTTAAGGTGTAC  400

seq1  GTGGCAATTGACCATTGCATTTCTAGTTAACATGGCTTTCAATATTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAATTGACCATTGCATTTCTAGTTAACATGGCTTTCAATATTTTCC  450

seq1  CTTACTGCTCCAGGAAATACTATTTGTCATTAAAGTTTCAAAATAATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCTCCAGGAAATACTATTTGTCATTAAAGTTTCAAAATAATTGA  500

seq1  AGCTCCCCTCTGTTGTAAGAAATAATAGAAGAATCATATCTGTCATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCCTCTGTTGTAAGAAATAATAGAAGAATCATATCTGTCATTATT  550

seq1  TCTTTCACTGTACTATACTATAAATCCGTAGCTCTCTTTCCTAATCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACTGTACTATACTATAAATCCGTAGCTCTCTTTCCTAATCTGGG  600

seq1  TATCTACATTGACACAGTGAAGATAAGAGTCATCTACATGACTCCTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACATTGACACAGTGAAGATAAGAGTCATCTACATGACTCCTTATT  650

seq1  GTCCAATTGTGCCCGTTGGTCACTAGACATTATTAATCTCATTTTCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATTGTGCCCGTTGGTCACTAGACATTATTAATCTCATTTTCCATG  700

seq1  TCTAATTTTGTCATCTAAAGAAGGCCATACATAGATTCACTTAGAATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTTGTCATCTAAAGAAGGCCATACATAGATTCACTTAGAATAGA  750

seq1  TAGCTTTTTGAACTTAGCCTTTTTCACTGAGATAAATTTTTGAGAAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTTGAACTTAGCCTTTTTCACTGAGATAAATTTTTGAGAAACTT  800

seq1  ATGCAGGTTGTTTTGTGTGTCAGAGTTTTATTTCATTTCATTTAATGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGTTGTTTTGTGTGTCAGAGTTTTATTTCATTTCATTTAATGCTG  850

seq1  ATTAATGTTCCATGGTGTAGATGAAAATTAGAATGTTTAAGTATTTACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTCCATGGTGTAGATGAAAATTAGAATGTTTAAGTATTTACCT  900

seq1  GTTGAAGGTACCTGGATGATTCTGTTTTAAGCTATTGTGAGTTAGGCTGC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTTGAAGGTACCTGGATGATTCTGTTTTAAGCTATTGTGAGTTA-GCTGC  949

seq1  TATAGACGTTCATGCATAGGTCTTTGTGGGCAAGATCCTTTTTCATTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACGTTCATGCATAGGTCTTTGTGGGCAAGATCCTTTTTCATTTTG  999

seq1  AGGAATTATATTATGGGAAGGACAATGGCTGAATCTTACATGCACGTTTA  1050
      ||||  |||| |||||  ||||||||| ||| ||| ||||||||||||| 
seq2  AGGA--TATA-TATGG--AGGACAATGCCTG-ATC-TACATGCACGTTT-  1041

seq1  ATTTTCAAAGTACGGTCAAACCAGTCTCCATAGTAGCTGTACCATTTCAT  1100
      ||||||||||||| ||| || |||||| ||||||||||||||||||||||
seq2  ATTTTCAAAGTAC-GTC-AATCAGTCTTCATAGTAGCTGTACCATTTCAT  1089

seq1  CTCCCCAATAGGAATACCTATTGTTCTCTTAC-TATGCAGTGGGGTTAAT  1149
      || ||  ||| ||||| ||||||||| ||||| || | | ||||  ||||
seq2  CTTCC--ATA-GAATATCTATTGTTC-CTTACATAGGGA-TGGG--TAAT  1132

seq1  TTAGGCTTCTCCTGTGCTCACTGG  1173
      |   ||||| ||||||||||||||
seq2  T--AGCTTC-CCTGTGCTCACTGG  1153

seq1: chr18_48057214_48058319
seq2: B6Ng01-067I17.g_69_1157 (reverse)

seq1  TAGCTTTATGCTAGGTTTATTTTTCTCTTGGTGTTATATTTAATTTTTGG  50
      |||||||| |||| ||||| |||||||  || |||||||| |   || ||
seq2  TAGCTTTA-GCTAAGTTTA-TTTTCTCCAGG-GTTATATTCA---TTCGG  44

seq1  TCATACAGATTGCTATTTGCCAATGAAAAGGTGCCTGCCTGATTCAATTT  100
      ||||| ||| ||||| ||||||||||||| ||| |||||||||   ||||
seq2  TCATAAAGA-TGCTA-TTGCCAATGAAAAAGTG-CTGCCTGAT--CATTT  89

seq1  TATGAGGTAGAATGGAAGAAATCAAAGTATGTGACTAATTAAGTTGGAAG  150
      |||||||||||||| ||||||||||||||||||||| |||||| ||||||
seq2  TATGAGGTAGAATGAAAGAAATCAAAGTATGTGACT-ATTAAG-TGGAAG  137

seq1  TTGTTTTTGTTGGATGGTAAGTCTGAATTCTGGTGACAAGCACTAG-AAA  199
       |||||    ||||||||||||| |||||||||||||||||||||| |||
seq2  -TGTTT---GTGGATGGTAAGTC-GAATTCTGGTGACAAGCACTAGAAAA  182

seq1  ATAGCTCTAGGGACTGTGACAACATTTGAAGCCACCCTACTGTCAGGACA  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTAGGAACTGTGACAACATTTGAAGCCACCCTACTGTCAGGACA  232

seq1  CTCTTACATACAGTTCCCACTTCCTCAGGGATGGACTCAGCTCCTTTCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACATACAGTTCCCACTTCCTCAGGGATGGACTCAGCTCCTTTCCC  282

seq1  TCTGACAAGCTTTTGAGTCTCCTCCCAAATAATGCTTTTCATTCTGTTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAGCTTTTGAGTCTCCTCCCAAATAATGCTTTTCATTCTGTTAT  332

seq1  CAAGGCTGGCTACTCTGCTTACACCAAGAAGTACTCAGGGAAAAAAATAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGGCTACTCTGCTTACACCAAGAAGTACTCAGGGAAAAAAATAC  382

seq1  ACATGGAAGACAACTATTCTAGAGTTATTAATGTTCCGGAGGCTCTTTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAGACAACTATTCTAGAGTTATTAATGTTCCGGAGGCTCTTTGC  432

seq1  ACACACCCAGGTACTAGAAGAATCAATTCACCAAGCATAGTTTGGGGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCCAGGTACTAGAAGAATCAATTCACCAAGCATAGTTTGGGGTCT  482

seq1  TCCTCTTTGATGATCCGACTCCTGATTTCACTTCCTGGGGACATGAATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTGATGATCCGACTCCTGATTTCACTTCCTGGGGACATGAATTT  532

seq1  CAGTGACCCCAAGGAGTCACCTGGGCCAGCCACAGTCAGTCAGTCCTTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCCCAAGGAGTCACCTGGGCCAGCCACAGTCAGTCAGTCCTTGC  582

seq1  AACAGAACATTACCATCAGTTAGGATCAACTTAAGGGCAACTTGAAAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACATTACCATCAGTTAGGATCAACTTAAGGGCAACTTGAAAGTT  632

seq1  GAAGAGGTCACCAGACTGGTTAAAGTTTAAGTAGGACCAATAAAGAGTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTCACCAGACTGGTTAAAGTTTAAGTAGGACCAATAAAGAGTAG  682

seq1  ATTTAAGGACGAGGCACTGTGCTTTGGGTGCCAAAATATACTTGATCAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGACGAGGCACTGTGCTTTGGGTGCCAAAATATACTTGATCAGT  732

seq1  TTTAGTGAACTGTTATTGATTGGTAACCGGACTTTAAATTGAGAGATACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGAACTGTTATTGATTGGTAACCGGACTTTAAATTGAGAGATACT  782

seq1  TTGGTTTAGTACAAATTTATCTTTTAATATGACTTTGTTATTAAATGGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTAGTACAAATTTATCTTTTAATATGACTTTGTTATTAAATGGCA  832

seq1  ATGATATTTTAAAAACATCGTTGTGATCCACATCAATGATAAAAATGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTTTAAAAACATCGTTGTGATCCACATCAATGATAAAAATGAAA  882

seq1  TTCCAAGACAGATTAAGAATTTACATGTACACACTACAGGCTGTCTTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGACAGATTAAGAATTTACATGTACACACTACAGGCTGTCTTGTG  932

seq1  TCGCTACCGCCGGAAGCGTGCCAGTCAAAATAACACAGACCTCAAAGTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTACCGCCGGAAGCGTGCCAGTCAAAATAACACAGACCTCAAAGTGT  982

seq1  AGCTGAGGGGCAGAAGCTTCTCTTTCCTTCACCAGAAGAAAATTCTGGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGGGCAGAAGCTTCTCTTTCCTTCACCAGAAGAAAATTCTGGTC  1032

seq1  TTGGTGCTCAACATTCACATCTTATTCCTTAGGTCTTGGGTTTCGTGTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCTCAACATTCACATCTTATTCCTTAGGTCTTGGGTTTCGTGTAA  1082

seq1  GGAATTC  1106
      |||||||
seq2  GGAATTC  1089