BAC Information

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BAC

Clone NameB6Ng01-069K12
Chromosome18 (Build37)
Map Location 43,784,566 - 43,911,852
singlet/doubletdoublet
Overlap geneJakmip2, Spink3
Upstream geneLOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807
Downstream geneScgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069K12.bB6Ng01-069K12.g
ACCDH887901DH887902
length1,1041,147
definitionDH887901|Mus musculus domesticus DNA, BAC clone: B6Ng01-069K12, 5' end.DH887902|Mus musculus domesticus DNA, BAC clone: B6Ng01-069K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,784,566 - 43,785,691)(43,910,694 - 43,911,852)
sequence
gaattcagtgactgtgtggtgtgattcaacttgtttgttttggttttggt
ttggttatggattttggtttttgattttgttttgtttgagagtttctgtg
tttcctcaccgctttctgatcaaagccagtcttgggccaagaatcagaaa
gtctccaagggaacaaccacattagatcttcacacaaccacctgtctctc
tgagctttcagtttcctggtctccttgctgctgtagctcgctaatcttct
aaaatgatggctcccagcaatagggcttctcctgttgctttcagtgaaag
cagggaacacttggtaacttcttcatttcaggagaaagtaaaaacttgag
gtggagacatgtctttgacactggggcctgtgcaacaggttgcatcatct
atgaaggccaaagttcatctacttcacaaccagagaaagtggttcctggc
ggagtcgtggggcagtatattataaagaggaagagaacgctgattccctc
attagccctcaaggttagtgtaacaggacaggtcgacttggcttgaaaat
aaagcctcctggttagcaaaaaatagattgccgtgatcctgatgtgattc
tgctgtggtatgattggtagtctctccttccccacaatcatatgctgaaa
cccagctccacagtagtggttttaagatgtcaggtcttgggcagaggggc
agaggggcagaggttaggtcatgagtgtgtgccactctcacaaatcctgc
cagtgatgtaagagtctcgagagtgaagatgcaggaaggtgtcatgcaac
gggaatgtgttctcaccagataaatgtcctggtgcagttaattctgttta
tgaatgatccagtctagtatattttggatcagcagcatgaatagataaga
tgtgcttgttcactcaatttgctttctgtcttctctccactcttctgaaa
tagagccccttaaatactatctcttcattttaaattttgtttctcagaag
caagactttcccttccaccttctcctacctgcctaaagcatgattcaatt
aatgattccaaatagtggcttttaggacgacagaacacttatttctactc
atcc
gaattctcctttgaaactaaattatgaatataaatatgaatttcttgcat
gccatacagagaggtatatgcagagggaaccaaatttcaggccacaaagg
taaattttaaatgaccagaactaaactcaaaatccatttatttctgacat
tctgtaacttattaacctctcttcatgttagttttattgtctgtaattaa
ttccacttcacagacttgctgacaggagtaaattgaatgtgatacatgca
caaggtgctagacgtgtagcgtttgcttaatttatgatatacaatatatt
cagagtaagtaatattgtagtagtgggcattaaaataactgcagatgaag
agataggtttgaacaaagagccaaaaaaggataggagatggaaatggtag
aggcttggagaagggtggcactccatcaatgagaatggcacattctatag
aggtaggcaagctatctttagtttttataggaagatatgaggtgagaatt
taaacagtgcatatagttatagaatctggagcctaataaaaccttgacta
tatttacagtgccatagagaatatgtgtgttggtaggtattctattttca
tgtctattgcggcaataaaatatcctgacaagaaatttatgaaggaaagt
tttattcagcttaaaatcccagataactatcaatcagagaactcacaggg
gcacatgacatgtctacaaccaagtactctagtacatatttttatttttc
tataactttaaaactattacgaagtaaaacatcttcttttaatggcaaaa
tacaggtcatttggtaggggtctgaactaaggaatcaccagtgaaaatat
aactagtcaaattttagaaattggctcactgtggtttggtgtcttggtta
ttgcataatgagacctttgagagaaatgggtagaatcaagtctaagggta
gtaagacctactccaaggtcctctgctctatgggccattggaactatagc
cttctacatcataaagagcatcctaagttgagagaataatcctgaatagg
tacagtggtagaaaagggaataggatgatatagaccactgccatcatagc
ataactgcataatcctgcgaacctggagcaaagtgacctggtgggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_43784566_43785691
seq2: B6Ng01-069K12.b_48_1151

seq1  GAATTCAGTGACTGTGTGGTGTGATTCAACTTGTTTGTTTTGGTTTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGACTGTGTGGTGTGATTCAACTTGTTTGTTTTGGTTTTGGT  50

seq1  TTGGTTATGGATTTTGGTTTTTGATTTTGTTTTGTTTGAGAGTTTCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTATGGATTTTGGTTTTTGATTTTGTTTTGTTTGAGAGTTTCTGTG  100

seq1  TTTCCTCACCGCTTTCTGATCAAAGCCAGTCTTGGGCCAAGAATCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCACCGCTTTCTGATCAAAGCCAGTCTTGGGCCAAGAATCAGAAA  150

seq1  GTCTCCAAGGGAACAACCACATTAGATCTTCACACAACCACCTGTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAAGGGAACAACCACATTAGATCTTCACACAACCACCTGTCTCTC  200

seq1  TGAGCTTTCAGTTTCCTGGTCTCCTTGCTGCTGTAGCTCGCTAATCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTTCAGTTTCCTGGTCTCCTTGCTGCTGTAGCTCGCTAATCTTCT  250

seq1  AAAATGATGGCTCCCAGCAATAGGGCTTCTCCTGTTGCTTTCAGTGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATGGCTCCCAGCAATAGGGCTTCTCCTGTTGCTTTCAGTGAAAG  300

seq1  CAGGGAACACTTGGTAACTTCTTCATTTCAGGAGAAAGTAAAAACTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACACTTGGTAACTTCTTCATTTCAGGAGAAAGTAAAAACTTGAG  350

seq1  GTGGAGACATGTCTTTGACACTGGGGCCTGTGCAACAGGTTGCATCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGACATGTCTTTGACACTGGGGCCTGTGCAACAGGTTGCATCATCT  400

seq1  ATGAAGGCCAAAGTTCATCTACTTCACAACCAGAGAAAGTGGTTCCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGCCAAAGTTCATCTACTTCACAACCAGAGAAAGTGGTTCCTGGC  450

seq1  GGAGTCGTGGGGCAGTATATTATAAAGAGGAAGAGAACGCTGATTCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCGTGGGGCAGTATATTATAAAGAGGAAGAGAACGCTGATTCCCTC  500

seq1  ATTAGCCCTCAAGGTTAGTGTAACAGGACAGGTCGACTTGGCTTGAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCCTCAAGGTTAGTGTAACAGGACAGGTCGACTTGGCTTGAAAAT  550

seq1  AAAGCCTCCTGGTTAGCAAAAAATAGATTGCCGTGATCCTGATGTGATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCCTGGTTAGCAAAAAATAGATTGCCGTGATCCTGATGTGATTC  600

seq1  TGCTGTGGTATGATTGGTAGTCTCTCCTTCCCCACAATCATATGCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGTATGATTGGTAGTCTCTCCTTCCCCACAATCATATGCTGAAA  650

seq1  CCCAGCTCCACAGTAGTGGTTTTAAGATGTCAGGTCTTGGGCAGAGGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCCACAGTAGTGGTTTTAAGATGTCAGGTCTTGGGCAGAGGGGC  700

seq1  AGAGGGGCAGAGGTTAGGTCATGAGTGTGTGCCACTCTCACAAATCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCAGAGGTTAGGTCATGAGTGTGTGCCACTCTCACAAATCCTGC  750

seq1  CAGTGATGTAAGAGTCTCGAGAGTGAAGATGCAGGAAGGTGTCATGCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGTAAGAGTCTCGAGAGTGAAGATGCAGGAAGGTGTCATGCAAC  800

seq1  GGGAATGTGTTCTCACCAGATAAATGTCCTGGTGCAGTTAATTCTGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTGTTCTCACCAGATAAATGTCCTGGTGCAGTTAATTCTGTTTA  850

seq1  TGAATGATCCAGTCTAGTATATTTTGGATCAGCAGCATGAATAGATAAAG  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGAATGATCCAGTCTAGTATATTTTGGATCAGCAGCATGAATAGAT-AAG  899

seq1  ATGTGCTTGTCCACTCAATTTGCTTTCCTGTCATCTCTCCACTCTTCTGA  950
      |||||||||| ||||||||||||||| ||||| |||||||||||||||||
seq2  ATGTGCTTGTTCACTCAATTTGCTTT-CTGTCTTCTCTCCACTCTTCTGA  948

seq1  TAATAGAGCCACCTTAAATTACTATTCCTCTTCCATTTTAATATTTTGTT  1000
       ||||||||| ||||||| ||||||  ||||| |||||||| |||||| |
seq2  -AATAGAGCC-CCTTAAA-TACTAT--CTCTT-CATTTTAA-ATTTTG-T  990

seq1  TTCTCTAGAAGCAAGGACCTTTCCCCTTCCACCTATCTCCTACCTGCCTA  1050
      ||||| |||||||| |||  || ||||||||||| |||||||||||||||
seq2  TTCTC-AGAAGCAA-GAC--TTTCCCTTCCACCT-TCTCCTACCTGCCTA  1035

seq1  GAAGCATGATTCACATATAAATGA-TCCAAATATGTGGCTTTTAGGACAG  1099
       ||||||||||||   || ||||| |||||||| |||||||||||||| |
seq2  -AAGCATGATTCA---ATTAATGATTCCAAATA-GTGGCTTTTAGGAC-G  1079

seq1  ACAGACTACTTATTTTCTACTTCATCC  1126
      |||||  ||||| ||||||| ||||||
seq2  ACAGAACACTTA-TTTCTAC-TCATCC  1104

seq1: chr18_43910694_43911852
seq2: B6Ng01-069K12.g_71_1217 (reverse)

seq1  TACCCACCAGAGTCACTTTTGCTCCAGGCTCTGCAAGGATTTATGCAGTT  50
      |||||||||| ||||| ||||||||||| || || |||| ||||||||||
seq2  TACCCACCAG-GTCAC-TTTGCTCCAGGTTC-GC-AGGA-TTATGCAGTT  45

seq1  ATTGCTATGATGTGCAGTTGGTCTATATCATTCCTATT-CCTTTTCTACC  99
      | |||||||||| |||| |||||||||||| ||||||| |||||||||||
seq2  A-TGCTATGATG-GCAG-TGGTCTATATCA-TCCTATTCCCTTTTCTACC  91

seq1  ACTGTACCCTATTCCAGGATTATCTCT-TCAACTTAGGATGCTCTTTATG  148
      |||||| |||||| ||||||||| ||| ||||||||||||||||||||||
seq2  ACTGTA-CCTATT-CAGGATTAT-TCTCTCAACTTAGGATGCTCTTTATG  138

seq1  ATGTGAGAGGCTATAGTTCCAATGGCCCATAGAGGCAGAGGACCTTGGAG  198
      ||||   |||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGTAGAAGGCTATAGTTCCAATGGCCCATAGA-GCAGAGGACCTTGGAG  187

seq1  TAGGTCTTACTACCCTTAGACCTGATTCTACCCATTTCTCTCAAAGGTCT  248
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGGTCTTACTACCCTTAGACTTGATTCTACCCATTTCTCTCAAAGGTCT  237

seq1  CATTATGCAATAACCAAGACACCAAACCACAGTGAGCCAATTTCTAAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATTATGCAATAACCAAGACACCAAACCACAGTGAGCCAATTTCTAAAA-  286

seq1  TTTGACTAGTTATATTTTCACTGGTGATTCCTTAGTTCAGACCCCTACCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTAGTTATATTTTCACTGGTGATTCCTTAGTTCAGACCCCTACCA  336

seq1  AATGACCTGTATTTTGCCATTAAAAGAAGATGTTTTACTTCGTAATAGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTGTATTTTGCCATTAAAAGAAGATGTTTTACTTCGTAATAGTT  386

seq1  TTAAAGTTATAGAAAAATAAAAATATGTACTAGAGTACTTGGTTGTAGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTATAGAAAAATAAAAATATGTACTAGAGTACTTGGTTGTAGAC  436

seq1  ATGTCATGTGCCCCTGTGAGTTCTCTGATTGATAGTTATCTGGGATTTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGTGCCCCTGTGAGTTCTCTGATTGATAGTTATCTGGGATTTTA  486

seq1  AGCTGAATAAAACTTTCCTTCATAAATTTCTTGTCAGGATATTTTATTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATAAAACTTTCCTTCATAAATTTCTTGTCAGGATATTTTATTGC  536

seq1  CGCAATAGACATGAAAATAGAATACCTACCAACACACATATTCTCTATGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATAGACATGAAAATAGAATACCTACCAACACACATATTCTCTATGG  586

seq1  CACTGTAAATATAGTCAAGGTTTTATTAGGCTCCAGATTCTATAACTATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAAATATAGTCAAGGTTTTATTAGGCTCCAGATTCTATAACTATA  636

seq1  TGCACTGTTTAAATTCTCACCTCATATCTTCCTATAAAAACTAAAGATAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTTTAAATTCTCACCTCATATCTTCCTATAAAAACTAAAGATAG  686

seq1  CTTGCCTACCTCTATAGAATGTGCCATTCTCATTGATGGAGTGCCACCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTACCTCTATAGAATGTGCCATTCTCATTGATGGAGTGCCACCCT  736

seq1  TCTCCAAGCCTCTACCATTTCCATCTCCTATCCTTTTTTGGCTCTTTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGCCTCTACCATTTCCATCTCCTATCCTTTTTTGGCTCTTTGTT  786

seq1  CAAACCTATCTCTTCATCTGCAGTTATTTTAATGCCCACTACTACAATAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTATCTCTTCATCTGCAGTTATTTTAATGCCCACTACTACAATAT  836

seq1  TACTTACTCTGAATATATTGTATATCATAAATTAAGCAAACGCTACACGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTCTGAATATATTGTATATCATAAATTAAGCAAACGCTACACGT  886

seq1  CTAGCACCTTGTGCATGTATCACATTCAATTTACTCCTGTCAGCAAGTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACCTTGTGCATGTATCACATTCAATTTACTCCTGTCAGCAAGTCT  936

seq1  GTGAAGTGGAATTAATTACAGACAATAAAACTAACATGAAGAGAGGTTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTGGAATTAATTACAGACAATAAAACTAACATGAAGAGAGGTTAA  986

seq1  TAAGTTACAGAATGTCAGAAATAAATGGATTTTGAGTTTAGTTCTGGTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTACAGAATGTCAGAAATAAATGGATTTTGAGTTTAGTTCTGGTCA  1036

seq1  TTTAAAATTTACCTTTGTGGCCTGAAATTTGGTTCCCTCTGCATATACCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTTACCTTTGTGGCCTGAAATTTGGTTCCCTCTGCATATACCT  1086

seq1  CTCTGTATGGCATGCAAGAAATTCATATTTATATTCATAATTTAGTTTCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATGGCATGCAAGAAATTCATATTTATATTCATAATTTAGTTTCA  1136

seq1  AAGGAGAATTC  1159
      |||||||||||
seq2  AAGGAGAATTC  1147