BAC Information

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BAC

Clone NameB6Ng01-070C20
Chromosome5 (Build37)18 (Build37)
Map Location 104,195,686 - 104,196,52365,392,345 - 65,392,497
singlet/doubletsingletsinglet
Overlap geneAff1
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik
Downstream geneKlhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070C20.bB6Ng01-070C20.g
ACCDH888259DH888260
length837410
definitionDH888259|Mus musculus domesticus DNA, BAC clone: B6Ng01-070C20, 5' end.DH888260|Mus musculus domesticus DNA, BAC clone: B6Ng01-070C20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,195,686 - 104,196,523)(65,392,345 - 65,392,497)
sequence
gaattctcgtgagctttgctgtgcatcttcccagatgaccttgagtgccc
tgtcaggaaacttgtggtcttttaataggatgctttccttgcaaatttgg
aaagcctcatcctgttttccagaacattacagcttaagtcagggttgcca
tgacccttgtagcttttcatgagacggaaaaggtgattcccagcggttcc
tgaatcactctgcaggcaccatccgtctgtagtggaggggaggtcctgtt
tgcctcagtttcccccagagagtagtagaaatgtgccttggctcttgcca
ttggcaaaggttgcgctaacagtctgaccaaatgtcactggtgatttaaa
tatgactttaggcagaagagcagatcatcttgtggctctgagtatcatct
ccctttactccagcctttcttctctgtctctttttctcctgacagggtct
ccctcagaattgcttgctgttttcaactaggctgactgcctgcaatcctg
tctccccctcctcccttcctgtgctggggttataggcactcacagcgggg
cctggcatttttctatgggtgctggggatttgaactcagatccctgtgtt
cttcctcactgagccgcctctccagcctgaagaaaaaaaaaaaagatctt
aggggtactttgtcatggtgaattttgacactttgaaaggcaggacttgg
atgaagtctctcgatggcagataggacgtgaactagagaaatagagctgt
aattccacctctttctaaaggccgagcacactgggtgggtagacacgtgt
gtgagtgtatgtatgtgtgaaagaatgttgtgtgtgt
aactcccagaacccatgtaatgggaagacagatgggattcagagaaattg
tcctctgatcattgtacccatgccttggtatatgagtatctgtgatggtt
tgtatatgctcagtccagggagtggcactactagaaggtgtggtcctgtt
ggagtagatgtatcactgtgggtgtgggctttaataacctcatcctagct
gcctggaagccagtattctgctagcagccttcatatgaagatacagaact
ctcagctgtgtttgcaccatgcctgcatgaacgctgccatgctcccacct
tgatgataatggactgaacctctgaacctgtaagccagccccgattaaat
gttgtcacttataagacgtgccttgctcatggtgtctgttcacagcagca
aaactctaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_104195686_104196523
seq2: B6Ng01-070C20.b_43_879

seq1  GAATTCTCGTGAGCTTTGCTGTGCATCTTCCCAGATGACCTTGAGTGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGTGAGCTTTGCTGTGCATCTTCCCAGATGACCTTGAGTGCCC  50

seq1  TGTCAGGAAACTTGTGGTCTTTTAATAGGATGCTTTCCTTGCAAATTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGAAACTTGTGGTCTTTTAATAGGATGCTTTCCTTGCAAATTTGG  100

seq1  AAAGCCTCATCCTGTTTTCCAGAACATTACAGCTTAAGTCAGGGTTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCATCCTGTTTTCCAGAACATTACAGCTTAAGTCAGGGTTGCCA  150

seq1  TGACCCTTGTAGCTTTTCATGAGACGGAAAAGGTGATTCCCAGCGGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTTGTAGCTTTTCATGAGACGGAAAAGGTGATTCCCAGCGGTTCC  200

seq1  TGAATCACTCTGCAGGCACCATCCGTCTGTAGTGGAGGGGAGGTCCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCACTCTGCAGGCACCATCCGTCTGTAGTGGAGGGGAGGTCCTGTT  250

seq1  TGCCTCAGTTTCCCCCAGAGAGTAGTAGAAATGTGCCTTGGCTCTTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGTTTCCCCCAGAGAGTAGTAGAAATGTGCCTTGGCTCTTGCCA  300

seq1  TTGGCAAAGGTTGCGCTAACAGTCTGACCAAATGTCACTGGTGATTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAAGGTTGCGCTAACAGTCTGACCAAATGTCACTGGTGATTTAAA  350

seq1  TATGACTTTAGGCAGAAGAGCAGATCATCTTGTGGCTCTGAGTATCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTTAGGCAGAAGAGCAGATCATCTTGTGGCTCTGAGTATCATCT  400

seq1  CCCTTTACTCCAGCCTTTCTTCTCTGTCTCTTTTTCTCCTGACAGGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTACTCCAGCCTTTCTTCTCTGTCTCTTTTTCTCCTGACAGGGTCT  450

seq1  CCCTCAGAATTGCTTGCTGTTTTCAACTAGGCTGACTGCCTGCAATCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGAATTGCTTGCTGTTTTCAACTAGGCTGACTGCCTGCAATCCTG  500

seq1  TCTCCCCCTCCTCCCTTCCTGTGCTGGGGTTATAGGCACTCACAGCGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCTCCTCCCTTCCTGTGCTGGGGTTATAGGCACTCACAGCGGGG  550

seq1  CCTGGCATTTTTCTATGGGTGCTGGGGATTTGAACTCAGATCCCTGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATTTTTCTATGGGTGCTGGGGATTTGAACTCAGATCCCTGTGTT  600

seq1  CTTCCTCACTGAGCCGCCTCTCCAGCCTGAAGAAAAAAAAAAAAGATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCACTGAGCCGCCTCTCCAGCCTGAAGAAAAAAAAAAAAGATCTT  650

seq1  AGGGGTAATTTGTCATGGTGAATTTTGACACTTTGAAAGGCAGGACTTGG  700
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTACTTTGTCATGGTGAATTTTGACACTTTGAAAGGCAGGACTTGG  700

seq1  ATGAAGTCTCTCGATGGCAGATAGGACGTGAACTAGAGAAATAGAGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCTCTCGATGGCAGATAGGACGTGAACTAGAGAAATAGAGCTGT  750

seq1  AATTCCACCTCTTTCTAAAGGCCGAGCACACTGGGTGGGTAGACACGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCACCTCTTTCTAAAGGCCGAGCACACTGGGTGGGTAGACACGTGT  800

seq1  GTGAGTGTATGTATGTGTGAAGGAATGTGTGTGTGTGT  838
      ||||||||||||||||||||| |||||| |||||||||
seq2  GTGAGTGTATGTATGTGTGAAAGAATGT-TGTGTGTGT  837

seq1: chr18_65392345_65392497
seq2: B6Ng01-070C20.g_342_483 (reverse)

seq1  GTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAAGTCTTAT  50
      ||||| ||||| |||||||||||||||||||||| ||||||| |||||||
seq2  GTTAGAGTTTTGCTGCTGTGAACAGACACCATGAGCAAGGCACGTCTTAT  50

seq1  AAAACACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCC  100
      ||   |||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGTGACAACATTTAATCGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCC  100

seq1  ATTATCATCAAGGTGGGAGCATGGCAGCATCCAGGCTGTCATGGCGCAGG  150
      |||||||||||||||||||||||||||| |        ||||   |||||
seq2  ATTATCATCAAGGTGGGAGCATGGCAGCGT--------TCAT---GCAGG  139

seq1  CAT  153
      |||
seq2  CAT  142