BAC Information

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BAC

Clone NameB6Ng01-072C15
Chromosome18 (Build37)
Map Location 47,042,253 - 47,182,364
singlet/doubletdoublet
Overlap gene4833403I15Rik, Gm949, LOC100042241, Commd10
Upstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, LOC666798
Downstream geneEG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072C15.bB6Ng01-072C15.g
ACCDH889655DH889656
length8691,148
definitionDH889655|Mus musculus domesticus DNA, BAC clone: B6Ng01-072C15, 5' end.DH889656|Mus musculus domesticus DNA, BAC clone: B6Ng01-072C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,042,253 - 47,043,123)(47,181,227 - 47,182,364)
sequence
gaattctctgtgttcctcgttgtctgtcacacataatggattactcaaga
ttctggacaagaggcaagaagatgacgtcacagtggcacaagctcccaag
gatggagctgtgcatatgcgtgcatgtggtgtggtgcacatgcgtgtttg
aatactttcagccatacctgcagctttaatatgatggcctttgggtctgt
ttcaaatactaacttccacaaaagtcaaactgtatgtgggtcttattgaa
gttctctgggctctattgtctataacacagactggggaaatgtaaaactg
caaccatgagtggttgtaccactgccggccaccttcttcttcctccctcc
tctgtttccctccctcatttgttaacgtgcaaccttttaagagaattttg
actctgacctctcattgtggcagatatcaacatgaataatggttttcaaa
cactacaaaaaaatttcaaggggctggcaagatggcccagtgggtttgcc
cccaagcttgataacatgagtttgattcctgaaatccatgttaaagttag
aaagaaggaagaactaactctacaaagttgtcctctgaccatgccgctgg
tatactgcttctcacattctacacacacacacacacacacacacacacac
accccccaaacaataacaacaataaatcaaacagtcctattctttcctca
aaccgtgaaaagaaacctaaggctctattgcattctgagacttttgagaa
gtgagcaatcttatgtatgcagatgagtgctgactttttgtttgtttgtt
tgtttgtttgttttgtttgtttgtttgttgttttcccgagaccggctttc
tctgtgtagccctggctgt
gaattcaacactaacactgtcaactggttagtcgggattgacaacttgac
aaaatatggaatcacggtggtaatgaatgagcctctgggtgtgtctgtaa
gggattatctagactggttaaatgagatgggaagacccgctctaactgtg
ggcagcacccacatgggctgcagagtgagaaggaacaaaagagaggaagt
aagctggactccatactagccacacgctgcccactgagagccggagcaat
gtgaccagctgcgtggagctctaccaccagcgtctcctgaccctatgaac
tgtgtgtgagcaaaaataaacactttcttcctcaagctgattttgagaga
cattttgtcacaataaagagacaaataagtaatatacacatttataaaat
atggccataggatctgcacgtacatgtaaacatacaaatatatttaaatg
catattattattttaaatactgtaaaaatgacaattctatacaaagtgtt
gctgcaaccagctcttttgtatcctctttagctggttttagctgtaatcc
agctatcaagtacaccatagttagaaatgttttggaacatttttatttcc
tataacacgaatagctgagagaggtctaaaacatttagaagaaaacaact
tcttagatttcctttgagcacatgtgctcttaaaaggttttatagtttgc
ttcaattttattttttatatttttagaaacttgattcatttgtccgtttt
aacttcatactgaaagaaatactcagaaactctgataagggcaaaggaca
ggaactgctaaactaaactgagagaatgaggggacaatttaatgaactgc
ctcgtgagctcctcctaagtacctgggtctattctgtaattgctaatatt
aaaaaatagacagaaaataaagaatgaaaaaaaaaaaagactaaaaaagt
gaagcagagacagacaccgatcgtattactctgatgttccctgatcttac
gaagctcaagggcggagcatttctgcttctcaattactctgggggcgagt
tgactagctgaagggctggattttcctaagcccatttaaatgtcagttgt
taacagggtctaacagaacaggcatttaactgtcagaaagaaaacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_47042253_47043123
seq2: B6Ng01-072C15.b_42_910

seq1  GAATTCTCTGTGTTCCTCGTTGTCTGTCAGACATAATGGATTACTCAAGA  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTCTCTGTGTTCCTCGTTGTCTGTCACACATAATGGATTACTCAAGA  50

seq1  TTCTGGACAAGAGGCAAGAAGATGACGTCACAGTGGCACAAGCTCCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGACAAGAGGCAAGAAGATGACGTCACAGTGGCACAAGCTCCCAAG  100

seq1  GATGGAGCTGTGCATATGCGTGCATGTGGTGTGGTGCACATGCGTGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCTGTGCATATGCGTGCATGTGGTGTGGTGCACATGCGTGTTTG  150

seq1  AATACTTTCAGCCATACCTGCAGCTTTAATATGATGGCCTTTGGGTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTCAGCCATACCTGCAGCTTTAATATGATGGCCTTTGGGTCTGT  200

seq1  TTCAAATACTAACTTCCACAAAAGTCAAACTGTATGTGGGTCTTATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATACTAACTTCCACAAAAGTCAAACTGTATGTGGGTCTTATTGAA  250

seq1  GTTCTCTGGGCTCTATTGTCTATAACACAGACTGGGGAAATGTAAAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGGGCTCTATTGTCTATAACACAGACTGGGGAAATGTAAAACTG  300

seq1  CAACCATGAGTGGTTGTACCACTGCCGGCCACCTTCTTCTTCCTCCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATGAGTGGTTGTACCACTGCCGGCCACCTTCTTCTTCCTCCCTCC  350

seq1  TCTGTTTCCCTCCCTCATTTGTTAACGTGCAACCTTTTAAGAGAATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCCCTCCCTCATTTGTTAACGTGCAACCTTTTAAGAGAATTTTG  400

seq1  ACTCTGACCTCTCATTGTGGCAGATATCAACATGAATAATGGTTTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGACCTCTCATTGTGGCAGATATCAACATGAATAATGGTTTTCAAA  450

seq1  CACTACAAAAAAATTTCAAGGGGCTGGCAAGATGGCCCAGTGGGTTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAAAAAAATTTCAAGGGGCTGGCAAGATGGCCCAGTGGGTTTGCC  500

seq1  CCCAAGCTTGATAACATGAGTTTGATTCCTGAAATCCATGTTAAAGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTTGATAACATGAGTTTGATTCCTGAAATCCATGTTAAAGTTAG  550

seq1  AAAGAAGGAAGAACTAACTCTACAAAGTTGTCCTCTGACCATGCCGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGAAGAACTAACTCTACAAAGTTGTCCTCTGACCATGCCGCTGG  600

seq1  TATACTGCTTCTCACATTCTACACACACACACACACACACACACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGCTTCTCACATTCTACACACACACACACACACACACACACACAC  650

seq1  ACCCCCCAAACAATAACAACAATAAATCAAACAGTCCTATTCTTTCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCAAACAATAACAACAATAAATCAAACAGTCCTATTCTTTCCTCA  700

seq1  AACCGTGAAAAGAAACCTAAGGCTCTATTGCATTCTGAGAC-TTTGAGAA  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACCGTGAAAAGAAACCTAAGGCTCTATTGCATTCTGAGACTTTTGAGAA  750

seq1  GTGAGCAATCTTATGTATGCAGATGAGTGCTGACTTTTTGTTTGTTTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAATCTTATGTATGCAGATGAGTGCTGACTTTTTGTTTGTTTGTT  800

seq1  TGTTTGTTTTGTTTTGTTTGTTTGTTTGTTTGTTTTTTCCGAGACCGGCT  849
      |||||| |||||||||||||||||||||||   |||| ||||||||||||
seq2  TGTTTG-TTTGTTTTGTTTGTTTGTTTGTT--GTTTTCCCGAGACCGGCT  847

seq1  TTCTCTGTGTAGCCCTGGCTGT  871
      ||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGT  869

seq1: chr18_47181227_47182364
seq2: B6Ng01-072C15.g_69_1216 (reverse)

seq1  GGTGGTTTCTTTCTTGCAGTTTAAATG-CTGTTCTGTTTGA-CCTGTCA-  47
      |||| |||||||||  ||| ||||||| |||||||||| || ||||| | 
seq2  GGTGTTTTCTTTCTGACAG-TTAAATGCCTGTTCTGTTAGACCCTGTTAA  49

seq1  -CACTGACATTTAAATGTGCTTAAGGAAATCCAG-CCATCAGCTAGTCAA  95
        ||||||||||||||| ||||| | |||||||| || ||||||||||||
seq2  CAACTGACATTTAAATGGGCTTAGGAAAATCCAGCCCTTCAGCTAGTCAA  99

seq1  CTCG--CCCAGAGTAATTGAG-AGCAG-AATGCT-CGCCC-TGAGCTCCG  139
      ||||  ||||||||||||||| ||||| |||||| ||||| |||||| ||
seq2  CTCGCCCCCAGAGTAATTGAGAAGCAGAAATGCTCCGCCCTTGAGCTTCG  149

seq1  T-AGATCAGGGAACATCAGAGTAATACGATTTGGTGTCTGTCTCTGCTTC  188
      | ||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  TAAGATCAGGGAACATCAGAGTAATACGA-TCGGTGTCTGTCTCTGCTTC  198

seq1  ACTTTTTTAGTCTTTTTTTTTTTTTCATTCTTTATTTTTCTGTCTATTTT  238
      |||||||||||| ||||||||||||||||||||| ||||||||||| |||
seq2  ACTTTTTTAGTC-TTTTTTTTTTTTCATTCTTTA-TTTTCTGTCTA-TTT  245

seq1  TTTAATATTAGCATTTACAGAATAGACCCAGGTACTTAGGAGGAGCTCAC  288
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTAGCAATTACAGAATAGACCCAGGTACTTAGGAGGAGCTCAC  295

seq1  GAGGCAGTTCATTAAATTGTCCCCTCATTCTCTCAGTTTAGTTTAGCAGT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTTCATTAAATTGTCCCCTCATTCTCTCAGTTTAGTTTAGCAGT  345

seq1  TCCTGTCC-TTGCCCTTATCAGAGTTTCTGAGTATTTCTTTCAGTATGAA  387
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCTTTGCCCTTATCAGAGTTTCTGAGTATTTCTTTCAGTATGAA  395

seq1  GTTAAAACGGACAAATGAATCAAGTTTCTAAAAATATAAAAAATAAAATT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAACGGACAAATGAATCAAGTTTCTAAAAATATAAAAAATAAAATT  445

seq1  GAAGC-AACTATAAAACCTTTTAAGAGCACATGTGCTCAAAGGAAATCTA  486
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAACTATAAAACCTTTTAAGAGCACATGTGCTCAAAGGAAATCTA  495

seq1  AGAAGTTGTTTTCTTCTAAATGTTTTAGACCTCTCTCAGCTATTCGTGTT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGTTTTCTTCTAAATGTTTTAGACCTCTCTCAGCTATTCGTGTT  545

seq1  ATAGGAAAT-AAAATGTTCCAAAACATTTCTAACTATGGTGTACTTGATA  585
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAATAAAAATGTTCCAAAACATTTCTAACTATGGTGTACTTGATA  595

seq1  GCTGGATTACAGCTAAAACCAGCTAAAGAGGATACAAAAGAGCTGGTTGC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTACAGCTAAAACCAGCTAAAGAGGATACAAAAGAGCTGGTTGC  645

seq1  AGCAACACTTTGTATAGAATTGTCATTTTTACAGTATTTAAAATAATAAT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACACTTTGTATAGAATTGTCATTTTTACAGTATTTAAAATAATAAT  695

seq1  ATGCATTTAAATATATTTGTATGTTTACATGTACGTGCAGATCCTATGGC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTAAATATATTTGTATGTTTACATGTACGTGCAGATCCTATGGC  745

seq1  CATATTTTATAAATGTGTATATTACTTATTTGTCTCTTTATTGTGACAAA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTATAAATGTGTATATTACTTATTTGTCTCTTTATTGTGACAAA  795

seq1  ATGTCTCTCAAAATCAGCTTGAGGAAGAAAGTGTTTATTTTTGCTCACAC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTCAAAATCAGCTTGAGGAAGAAAGTGTTTATTTTTGCTCACAC  845

seq1  ACAGTTCATAGGGTCAGGAGACGCTGGTGGTAGAGCTCCACGCAGCTGGT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCATAGGGTCAGGAGACGCTGGTGGTAGAGCTCCACGCAGCTGGT  895

seq1  CACATTGCTCCGGCTCTCAGTGGGCAGCGTGTGGCTAGTATGGAGTCCAG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGCTCCGGCTCTCAGTGGGCAGCGTGTGGCTAGTATGGAGTCCAG  945

seq1  CTTACTTCCTCTCTTTTGTTCCTTCTCACTCTGCAGCCCATGTGGGTGCT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCCTCTCTTTTGTTCCTTCTCACTCTGCAGCCCATGTGGGTGCT  995

seq1  GCCCACAGTTAGAGCGGGTCTTCCCATCTCATTTAACCAGTCTAGATAAT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAGTTAGAGCGGGTCTTCCCATCTCATTTAACCAGTCTAGATAAT  1045

seq1  CCCTTACAGACACACCCAGAGGCTCATTCATTACCACCGTGATTCCATAT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACAGACACACCCAGAGGCTCATTCATTACCACCGTGATTCCATAT  1095

seq1  TTTGTCAAGTTGTCAATCCCGACTAACCAGTTGACAGTGTTAGTGTTGAA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAAGTTGTCAATCCCGACTAACCAGTTGACAGTGTTAGTGTTGAA  1145

seq1  TTC  1138
      |||
seq2  TTC  1148