BAC Information

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BAC

Clone NameB6Ng01-075J01
Chromosome18 (Build37)
Map Location 44,289,051 - 44,441,877
singlet/doubletdoublet
Overlap geneLOC100042855, 9530002K18Rik, Spink11, Npy6r
Upstream geneLOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12
Downstream geneMyot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075J01.bB6Ng01-075J01.g
ACCDH892089DH892090
length1,132978
definitionDH892089|Mus musculus domesticus DNA, BAC clone: B6Ng01-075J01, 5' end.DH892090|Mus musculus domesticus DNA, BAC clone: B6Ng01-075J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,289,051 - 44,290,180)(44,440,910 - 44,441,877)
sequence
gaattcatatgcaccatcactcctgctgtgtttagaagacctggtttcct
tggtgtcttccatcccttctgtctcttacaaactttctactgcctcttct
gcagggatctttttgcatatgaaaactgcaatcaaattgaaatatttaga
cataacacattataaaactgcagcaacactctcatccaaacaggtaatta
ttatacttttacaagaacattaacatgatacacctgatattacatccatg
atatttcagcttggcagagaatgagtgcaatgcaatcaaattaaatgcac
caatacaagtgtgaatcccagttctgagaccgactttctttgatggtaat
atcatcactgcagccacattctcactactgatacatccatatatttcctc
aactctttattttgatgctcgaacttttgtatcatatgcttttcttacac
catatatttaccacttaccattaaaaaatttaacaaactctgcctttcat
ttggagctatttgggtaatgtctattgaatgtgattcatgtggacatatt
tagtaatgctattggcacagccatgtctaatgagaacagtgaaagtcata
aagccagtacagctcctagacaaaggtccagcaaagctgagccatgtgat
acaatcaccattgtgctctaaattttagtcttgatctctgcctgttgcaa
gctttggaggttttcagtatttgtacaacttggggaaattgggttgatgg
gaaatttcttatgaattatttatgccttcttccaacctttctccaggaaa
ttcttgagcgtactacccctcccacttttagggagatatcattatctggc
ctgacttgaaggtcttccttacatcctggaggttgtgactcacataaata
tgccagagatctccttatgaggctccagctccaagattctcttcaaaatc
ttcccttgtaactcaggaacaagataatcagaacaaagtaaacttagaaa
ggtaaacagagtcagtgggctagagaagttgcacagatcagattaaggtg
tctttttgctactatacacgtagacattaacatgacatattaattatttg
ggggcctcatatgtatggcccctcaatggaaa
gaattcacaaagcagctaagagaactctagccccacatcattccagctta
acttctattcatcctctgcatcttccagaaagactctccacttcttagat
aaagataattgaagtggaaaattttggtttctttggagagtcacttgtat
catatgatgcttttctggaaattgtcttatgagaggatatttttgttgaa
gcagatttgtgggaggatgtttttctgaaaacagacacatgatggttttc
tggaagctaccttaaaaaaaaaagacatgtactgttttgcttgagtggat
gcttgagagaacacatgatgtttaaaaagagtaaatataacccaacagat
aatagatgttgctgtgtggtattggttcgccttgccactctttgcaggtc
atttttttgtgaccttgtacaaaacaaaacaaaaaacttctggtgatgtc
ttggtggcttcttgccacttctgcagattagggccaattggcagagcctc
atagtttcttctggattaaactgctgttgctgactcatatggtgtttgcg
agtggatggagctactgttgctgattcatgcaaactaaactactgatatc
ctgataatgcagattggattcgactgaaagaactatttctaaacgagtcc
acatcctcctttgccttattaccctttttcttccagtaccactggtgggt
ggagggctagaagggaggttaaagcctttaagtaacacttattaaaagta
ggtttaaaaaatataaagcctacagaataattcttgataaattatatttg
gtgatatactttttctattattatctttggttcactttaccaactggttc
aactctgtttcctcctcctctgccattgtttcttctcccccaccttctct
actctttcttcccttcttctctcaaagtccttcttctggttcttattctg
cataacagggaataagcccttaaatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44289051_44290180
seq2: B6Ng01-075J01.b_44_1175

seq1  GAATTCATATGCACCATCACTCCTGCTGTGTTTAGAAGACCTGGTTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGCACCATCACTCCTGCTGTGTTTAGAAGACCTGGTTTCCT  50

seq1  TGGTGTCTTCCATCCCTTCTGTCTCTTACAAACTTTCTACTGCCTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTTCCATCCCTTCTGTCTCTTACAAACTTTCTACTGCCTCTTCT  100

seq1  GCAGGGATCTTTTTGCATATGAAAACTGCAATCAAATTGAAATATTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGATCTTTTTGCATATGAAAACTGCAATCAAATTGAAATATTTAGA  150

seq1  CATAACACATTATAAAACTGCAGCAACACTCTCATCCAAACAGGTAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACACATTATAAAACTGCAGCAACACTCTCATCCAAACAGGTAATTA  200

seq1  TTATACTTTTACAAGAACATTAACATGATACACCTGATATTACATCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTTTTACAAGAACATTAACATGATACACCTGATATTACATCCATG  250

seq1  ATATTTCAGCTTGGCAGAGAATGAGTGCAATGCAATCAAATTAAATGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAGCTTGGCAGAGAATGAGTGCAATGCAATCAAATTAAATGCAC  300

seq1  CAATACAAGTGTGAATCCCAGTTCTGAGACCGACTTTCTTTGATGGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAAGTGTGAATCCCAGTTCTGAGACCGACTTTCTTTGATGGTAAT  350

seq1  ATCATCACTGCAGCCACATTCTCACTACTGATACATCCATATATTTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCACTGCAGCCACATTCTCACTACTGATACATCCATATATTTCCTC  400

seq1  AACTCTTTATTTTGATGCTCGAACTTTTGTATCATATGCTTTTCTTACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTATTTTGATGCTCGAACTTTTGTATCATATGCTTTTCTTACAC  450

seq1  CATATATTTACCACTTACCATTAAAAAATTTAACAAACTCTGCCTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTTACCACTTACCATTAAAAAATTTAACAAACTCTGCCTTTCAT  500

seq1  TTGGAGCTATTTGGGTAATGTCTATTGAATGTGATTCATGTGGACATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCTATTTGGGTAATGTCTATTGAATGTGATTCATGTGGACATATT  550

seq1  TAGTAATGCTATTGGCACAGCCATGTCTAATGAGAACAGTGAAAGTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATGCTATTGGCACAGCCATGTCTAATGAGAACAGTGAAAGTCATA  600

seq1  AAGCCAGTACAGCTCCTAGACAAAGGTCCAGCAAAGCTGAGCCATGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTACAGCTCCTAGACAAAGGTCCAGCAAAGCTGAGCCATGTGAT  650

seq1  ACAATCACCATTGTGCTCTAAATTTTAGTCTTGATCTCTGCCTGTTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCACCATTGTGCTCTAAATTTTAGTCTTGATCTCTGCCTGTTGCAA  700

seq1  GCTTTGGAGGTTTTCAGTATTTGTACAACTTGGGGAAATTGGGTTGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGAGGTTTTCAGTATTTGTACAACTTGGGGAAATTGGGTTGATGG  750

seq1  GAAATTTCTTATGAATTATTTATGCCTTCTTCCAACCTTTCTCCAGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCTTATGAATTATTTATGCCTTCTTCCAACCTTTCTCCAGGAAA  800

seq1  TTCTTGAGCGTACTACCCCTCCCACTTTTAGGGAGATATCATTATCTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGCGTACTACCCCTCCCACTTTTAGGGAGATATCATTATCTGGC  850

seq1  CTGACTTGAAGGTCTTCCTTACATCCTGGAGGTTGTGACTCACATAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTGAAGGTCTTCCTTACATCCTGGAGGTTGTGACTCACATAAATA  900

seq1  TGCCAGAGATCTCCTTATGAGGCTCCAGCTCCAAGATTCTCTTCAAAAAT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCCAGAGATCTCCTTATGAGGCTCCAGCTCCAAGATTCTCTTC-AAAAT  949

seq1  CTTCCCTTGTAACTCAGGAACAAGATAATCAGAACAAAGTAAACTTAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTGTAACTCAGGAACAAGATAATCAGAACAAAGTAAACTTAGAA  999

seq1  AGGTAAACAAGAGTCAGTGGGCTAGAGAAGTTGGCAACAGATCAGATT-A  1049
      |||||||| ||||||||||||||||||||||||   |||||||||||| |
seq2  AGGTAAAC-AGAGTCAGTGGGCTAGAGAAGTTG--CACAGATCAGATTAA  1046

seq1  GGTGTC-TCTTGCTACTATACACGTAGACAATTACATGACATA-TAAT--  1095
      |||||| | ||||||||||||||||||||| | |||||||||| ||||  
seq2  GGTGTCTTTTTGCTACTATACACGTAGACATTAACATGACATATTAATTA  1096

seq1  ATTGGGGGCCTCATATGGTAT-GCCCCTC-ATGGAAA  1130
       ||||||||||||||| |||| ||||||| |||||||
seq2  TTTGGGGGCCTCATAT-GTATGGCCCCTCAATGGAAA  1132

seq1: chr18_44440910_44441877
seq2: B6Ng01-075J01.g_70_1047 (reverse)

seq1  AATATTTAA-GGCTTAATCCCTGGTACTGCAGAATAAGAAGCAGAAGAAG  49
      ||||||||| |||||| |||||| || ||||||||||||| |||||||||
seq2  AATATTTAAGGGCTTATTCCCTGTTA-TGCAGAATAAGAACCAGAAGAAG  49

seq1  GACTTTGAGGAGAAGAAGGGAAGAAAGAGTAGAGAAGGTGGGGGAGATGA  99
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  GACTTTGA-GAGAAGAAGGGAAGAAAGAGTAGAGAAGGTGGGGGAGAAGA  98

seq1  AACAATGGCAGAGGAGGAGGAAACAGAGTAGAA-CAG-TAGTAAAGTGAA  147
      ||||||||||||||||||||||||||||| ||| ||| | ||||||||||
seq2  AACAATGGCAGAGGAGGAGGAAACAGAGTTGAACCAGTTGGTAAAGTGAA  148

seq1  -CAAAGAT-ATAATAGAAAAAGTATATCA-CAAATAT-ATTTATCAAGAA  193
       ||||||| |||||||||||||||||||| ||||||| ||||||||||||
seq2  CCAAAGATAATAATAGAAAAAGTATATCACCAAATATAATTTATCAAGAA  198

seq1  TT-TTCTGTAGGC-TTATA-TTTTTAAACCTAC-TTTAATAAGTG-TACT  238
      || |||||||||| ||||| ||||||||||||| ||||||||||| ||||
seq2  TTATTCTGTAGGCTTTATATTTTTTAAACCTACTTTTAATAAGTGTTACT  248

seq1  TAAAGGCTTTAACCTCCCTTCTAGCCCTCCACCCACCAGTGGTACTGGAA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCTTTAACCTCCCTTCTAGCCCTCCACCCACCAGTGGTACTGGAA  298

seq1  AGAAAAGGGTAATAAGGCAAAGGAGGATGTGGACTCGTTTAGAAATAGTT  338
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGGTAATAAGGCAAAGGAGGATGTGGACTCGTTTAGAAATAGTT  348

seq1  CTTTCAGTCGAATCCAATCTGCATTATCAGGATATCAGTAGTTTAGTTTG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTCGAATCCAATCTGCATTATCAGGATATCAGTAGTTTAGTTTG  398

seq1  CATGAATCAGCAACAGTAGCTCCATCCACTCGCAAACACCATATGAGTCA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATCAGCAACAGTAGCTCCATCCACTCGCAAACACCATATGAGTCA  448

seq1  GCAACAGCAGTTTAATCCAGAAGAAACTATGAGGCTCTGCCAATTGGCCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGCAGTTTAATCCAGAAGAAACTATGAGGCTCTGCCAATTGGCCC  498

seq1  TAATCTGCAGAAGTGGCAAGAAGCCACCAAGACATCACCAGAAGTTTTTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGCAGAAGTGGCAAGAAGCCACCAAGACATCACCAGAAGTTTTTT  548

seq1  GTTTTGTTTTGTACAAGGTCACAAAAAAATGACCTGCAAAGAGTGGCAAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTACAAGGTCACAAAAAAATGACCTGCAAAGAGTGGCAAG  598

seq1  GCGAACCAATACCACACAGCAACATCTATTATCTGTTGGGTTATATTTAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAACCAATACCACACAGCAACATCTATTATCTGTTGGGTTATATTTAC  648

seq1  TCTTTTTAAACATCATGTGTTCTCTCAAGCATCCACTCAAGCAAAACAGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAAACATCATGTGTTCTCTCAAGCATCCACTCAAGCAAAACAGT  698

seq1  ACATGTCTTTTTTTTTTAAGGTAGCTTCCAGAAAACCATCATGTGTCTGT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCTTTTTTTTTTAAGGTAGCTTCCAGAAAACCATCATGTGTCTGT  748

seq1  TTTCAGAAAAACATCCTCCCACAAATCTGCTTCAACAAAAATATCCTCTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAAAACATCCTCCCACAAATCTGCTTCAACAAAAATATCCTCTC  798

seq1  ATAAGACAATTTCCAGAAAAGCATCATATGATACAAGTGACTCTCCAAAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACAATTTCCAGAAAAGCATCATATGATACAAGTGACTCTCCAAAG  848

seq1  AAACCAAAATTTTCCACTTCAATTATCTTTATCTAAGAAGTGGAGAGTCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAATTTTCCACTTCAATTATCTTTATCTAAGAAGTGGAGAGTCT  898

seq1  TTCTGGAAGATGCAGAGGATGAATAGAAGTTAAGCTGGAATGATGTGGGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAGATGCAGAGGATGAATAGAAGTTAAGCTGGAATGATGTGGGG  948

seq1  CTAGAGTTCTCTTAGCTGCTTTGTGAATTC  968
      ||||||||||||||||||||||||||||||
seq2  CTAGAGTTCTCTTAGCTGCTTTGTGAATTC  978