BAC Information

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BAC

Clone NameB6Ng01-075P20
Chromosome18 (Build37)
Map Location 8,758,493 - 8,877,237
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039606, Wac, LOC665121, LOC225134, LOC665132, EG433158, EG545242
Downstream geneLOC665161, Fzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075P20.bB6Ng01-075P20.g
ACCDH892391DH892392
length1,096657
definitionDH892391|Mus musculus domesticus DNA, BAC clone: B6Ng01-075P20, 5' end.DH892392|Mus musculus domesticus DNA, BAC clone: B6Ng01-075P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,758,493 - 8,759,587)(8,876,581 - 8,877,237)
sequence
tgccagaaaagctctttactctgaaagattctgagggcaggagaaatgtt
acatgcaaggaagcaggcttagttaatatgtgaagtgtgctcctgattga
ggcaaaggagaaggccatacatggcttaggggtcacttttcctgtggttt
aggagtgggtcttagttaatgtgtaacccatgcaacaccacagttgtcag
gctgcctccacccttggcagtggcaagactctgggtatattcctgctctg
ttcatagtcctctctgctgtggaaggcctgagttctcagaacactgtttg
agcactttgggggagacagatggtggtcttgaacttggtggcagcagaaa
gaacaggagcattccaacattgggaccagaatccacctgacatggcaaca
gtccacagctacgcacataagtcaaggacagttgggtgtttatagataat
tccacagtctcacaaagactgcagaagctttctgttctctacatgtggcc
cctctgtgtcactctcagtggaaggagactgtcgtagtggaccctgccca
cctccaatcttcccctaggaaatgtcctgaaatagtgatttcagctcaac
cctccattcaaatccagtataagatggactccaccgactgaaagaaagca
ttgtgtataaagtcgcagccatcaggactttgatctcatgaacttccatt
gcttatttcacaggaccatttaacaggtacagttttaaaatgtcctaagg
actaaggctttcttttgttctgaacatatggaagtagaaataacaaggct
gcctgaaagtcatcatctgatagcctagtcctctaaaaagtattaaagaa
aaagatttggtgttccaaaaactgccacaaatgggagctccagtgctgtg
tctacaaaccacaaacttgtaatgttttccctagggattgttgacttttg
tttacttatgttgtgttttgtgttgtatggggtgtgtggtacacacatct
atgtggatacttgtgtgcatggatggaacacaaatgtggaggtcagtgga
taggctccagtgcttgattctggttgcccttctaccaccttttttg

gaattctgtgtcctgtgataatcccatgtctataactcatttctaaacac
ggtgattctaaatgttaggtctggttctgggctaacatgggggtcctggt
gaacatgcttaagtggaaagacagggcacagaaggcaatgggggatttgg
tgtgaggctctttttggtttccaaggactagctcttcaagaggtacatgt
cttcatgttctggtaatgactgccagtctgtgtaccaggcactatatgta
gagatctgcagggctctggcccagcctgaagagccagagttgtgtgcttt
ccaacggggaggggagtcattcttctgaagctgcattgctgctctggtac
agtgagacacgatgtgctaggccagcaagaataaggaaggggagtcggag
ctgggcaagttgccaggtttcttctgaggccactgctgctcctgagtcag
tgctaagtggtgaaatcctacttggggcgctgtggttaggagccaaggtc
aggaggtgactctcccaaagcagcaaatgaacttttcattcttctcctta
caagattatgctatattttccatacttcagtcaaatggccaaagccaaga
aggagcaggaggaagagaagcaaaggagaagaagaagaaaaagaagaagg
aggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_8758493_8759587
seq2: B6Ng01-075P20.b_60_1155

seq1  TGCCAGAAAAGCTCTTTACTCTGAAAGATTCTGAGGGCAGGAGAAATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAAAAGCTCTTTACTCTGAAAGATTCTGAGGGCAGGAGAAATGTT  50

seq1  ACATGCAAGGAAGCAGGCTTAGTTAATATGTGAAGTGTGCTCCTGATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAAGGAAGCAGGCTTAGTTAATATGTGAAGTGTGCTCCTGATTGA  100

seq1  GGCAAAGGAGAAGGCCATACATGGCTTAGGGGTCACTTTTCCTGTGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGAGAAGGCCATACATGGCTTAGGGGTCACTTTTCCTGTGGTTT  150

seq1  AGGAGTGGGTCTTAGTTAATGTGTAACCCATGCAACACCACAGTTGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGGGTCTTAGTTAATGTGTAACCCATGCAACACCACAGTTGTCAG  200

seq1  GCTGCCTCCACCCTTGGCAGTGGCAAGACTCTGGGTATATTCCTGCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCCACCCTTGGCAGTGGCAAGACTCTGGGTATATTCCTGCTCTG  250

seq1  TTCATAGTCCTCTCTGCTGTGGAAGGCCTGAGTTCTCAGAACACTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTCCTCTCTGCTGTGGAAGGCCTGAGTTCTCAGAACACTGTTTG  300

seq1  AGCACTTTGGGGGAGACAGATGGTGGTCTTGAACTTGGTGGCAGCAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTGGGGGAGACAGATGGTGGTCTTGAACTTGGTGGCAGCAGAAA  350

seq1  GAACAGGAGCATTCCAACATTGGGACCAGAATCCACCTGACATGGCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGAGCATTCCAACATTGGGACCAGAATCCACCTGACATGGCAACA  400

seq1  GTCCACAGCTACGCACATAAGTCAAGGACAGTTGGGTGTTTATAGATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAGCTACGCACATAAGTCAAGGACAGTTGGGTGTTTATAGATAAT  450

seq1  TCCACAGTCTCACAAAGACTGCAGAAGCTTTCTGTTCTCTACATGTGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGTCTCACAAAGACTGCAGAAGCTTTCTGTTCTCTACATGTGGCC  500

seq1  CCTCTGTGTCACTCTCAGTGGAAGGAGACTGTCGTAGTGGACCCTGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGTCACTCTCAGTGGAAGGAGACTGTCGTAGTGGACCCTGCCCA  550

seq1  CCTCCAATCTTCCCCTAGGAAATGTCCTGAAATAGTGATTTCAGCTCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAATCTTCCCCTAGGAAATGTCCTGAAATAGTGATTTCAGCTCAAC  600

seq1  CCTCCATTCAAATCCAGTATAAGATGGACTCCACCGACTGAAAGAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTCAAATCCAGTATAAGATGGACTCCACCGACTGAAAGAAAGCA  650

seq1  TTGTGTATAAAGTCGCAGCCATCAGGACTTTGATCTCATGAACTTCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATAAAGTCGCAGCCATCAGGACTTTGATCTCATGAACTTCCATT  700

seq1  GCTTATTTCACAGGACCATTTAACAGGTACAGTTTTAAAATGTCCTAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTCACAGGACCATTTAACAGGTACAGTTTTAAAATGTCCTAAGG  750

seq1  ACTAAGGCTTTCTTTTGTTCTGAACATATGGAAGTAGAAATAACAAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGCTTTCTTTTGTTCTGAACATATGGAAGTAGAAATAACAAGGCT  800

seq1  GCCTGAAAGTCATCATCTGATAGCCTAGTCCTCTAAAAAGTATTAAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAAGTCATCATCTGATAGCCTAGTCCTCTAAAAAGTATTAAAGAA  850

seq1  AAAGATTTGGTGTTCCAAAAACTGCCACAAAT-GGAGCTCCAGTGCTGTG  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAGATTTGGTGTTCCAAAAACTGCCACAAATGGGAGCTCCAGTGCTGTG  900

seq1  TCTACAAAACCACAAACTTGTAATGTTTT-CCTAGGGATTGTTGACTTTT  948
      ||||| ||||||||||||||||||||||| |||||||||||||||| |||
seq2  TCTAC-AAACCACAAACTTGTAATGTTTTCCCTAGGGATTGTTGAC-TTT  948

seq1  TGTTTACTTATGTTTGTGTTTTTGTGTTGTAT-GGGTGTGTGGTACACAC  997
      |||||||||||| ||||| ||||||||||||| |||||||||||||||||
seq2  TGTTTACTTATG-TTGTG-TTTTGTGTTGTATGGGGTGTGTGGTACACAC  996

seq1  ATCTATGTGGATACTTGTGTGCATGGAT-GAACACAAATGTGGAGGTCAG  1046
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCTATGTGGATACTTGTGTGCATGGATGGAACACAAATGTGGAGGTCAG  1046

seq1  TGGATAGGCTCCAGTGC-TGATTCTTGGTTG-CCTTCTACCACCTTTTTT  1094
      ||||||||||||||||| |||||| |||||| ||||||||||||||||||
seq2  TGGATAGGCTCCAGTGCTTGATTC-TGGTTGCCCTTCTACCACCTTTTTT  1095

seq1  G  1095
      |
seq2  G  1096


seq1: chr18_8876581_8877237
seq2: B6Ng01-075P20.g_69_725 (reverse)

seq1  TCCTCCTCCTTCTTCTTTTTCTTCTTCTTCTCCTTTGCTTCTCTTCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTTCTTCTTTTTCTTCTTCTTCTCCTTTGCTTCTCTTCCTCC  50

seq1  TGCTCCTTCTTGGCTTTGGCCATTTGACTGAAGTATGGAAAATATAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTCTTGGCTTTGGCCATTTGACTGAAGTATGGAAAATATAGCAT  100

seq1  AATCTTGTAAGGAGAAGAATGAAAAGTTCATTTGCTGCTTTGGGAGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTAAGGAGAAGAATGAAAAGTTCATTTGCTGCTTTGGGAGAGTC  150

seq1  ACCTCCTGACCTTGGCTCCTAACCACAGCGCCCCAAGTAGGATTTCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGACCTTGGCTCCTAACCACAGCGCCCCAAGTAGGATTTCACCA  200

seq1  CTTAGCACTGACTCAGGAGCAGCAGTGGCCTCAGAAGAAACCTGGCAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCACTGACTCAGGAGCAGCAGTGGCCTCAGAAGAAACCTGGCAACT  250

seq1  TGCCCAGCTCCGACTCCCCTTCCTTATTCTTGCTGGCCTAGCACATCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCTCCGACTCCCCTTCCTTATTCTTGCTGGCCTAGCACATCGTG  300

seq1  TCTCACTGTACCAGAGCAGCAATGCAGCTTCAGAAGAATGACTCCCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGTACCAGAGCAGCAATGCAGCTTCAGAAGAATGACTCCCCTCC  350

seq1  CCGTTGGAAAGCACACAACTCTGGCTCTTCAGGCTGGGCCAGAGCCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGGAAAGCACACAACTCTGGCTCTTCAGGCTGGGCCAGAGCCCTGC  400

seq1  AGATCTCTACATATAGTGCCTGGTACACAGACTGGCAGTCATTACCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCTACATATAGTGCCTGGTACACAGACTGGCAGTCATTACCAGAA  450

seq1  CATGAAGACATGTACCTCTTGAAGAGCTAGTCCTTGGAAACCAAAAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGACATGTACCTCTTGAAGAGCTAGTCCTTGGAAACCAAAAAGAG  500

seq1  CCTCACACCAAATCCCCCATTGCCTTCTGTGCCCTGTCTTTCCACTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACCAAATCCCCCATTGCCTTCTGTGCCCTGTCTTTCCACTTAAG  550

seq1  CATGTTCACCAGGACCCCCATGTTAGCCCAGAACCAGACCTAACATTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCACCAGGACCCCCATGTTAGCCCAGAACCAGACCTAACATTTAG  600

seq1  AATCACCGTGTTTAGAAATGAGTTATAGACATGGGATTATCACAGGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCGTGTTTAGAAATGAGTTATAGACATGGGATTATCACAGGACAC  650

seq1  AGAATTC  657
      |||||||
seq2  AGAATTC  657


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