BAC Information

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BAC

Clone NameB6Ng01-076O20
Chromosome18 (Build37)
Map Location 82,850,104 - 83,047,865
singlet/doubletdoublet
Overlap geneZfp236, LOC100039563
Upstream geneLOC100039458, LOC100040871, B020010K11Rik, Galr1, Mbp, EG637748
Downstream geneZfp516, LOC100041001, 4921531P14Rik, LOC665284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076O20.bB6Ng01-076O20.g
ACCDH893046DH893047
length1,120971
definitionDH893046|Mus musculus domesticus DNA, BAC clone: B6Ng01-076O20, 5' end.DH893047|Mus musculus domesticus DNA, BAC clone: B6Ng01-076O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,046,766 - 83,047,865)(82,850,104 - 82,851,096)
sequence
gaattctctatgcagaccaggctgaactcagaatcacagagatccccctg
cctctgcctctctaaaggcacacatcacctcattcagctttcccttctgt
tttgagattgggtctctcactgaagctggagctctggtagactggctgcc
tgccgggagcctctgggccatctcctgactttacaccctcaatgctgtgg
ttacagctgccctttaccgtgctgatcttgttatgtggatgttggggatc
cgaactcagatcttcaggtcctgtagtctattttgaaggccaatgctcta
atgcctattttgataagagggcagctgggttcaccatctgtcactctgct
gatcaccacaagcatgcgcagtccactagaacacccttcctctttcccgc
cgatccttctagatccttctgtcggtctgatgcgtcctagcagccgcctt
tccctattcaaacctctaaacaggctctcaggaccacatctgtgtaaccg
ccaggactttaaagcagtccgtttcagatgctccctccgatgcttggttt
tgagggactcagcagtgtgtggccccccctccgcctccccagtccacatc
ctctcagcccagattggatcctgccaatgggcctcaggctgcttacctct
gaaacacagcccggagtcacccaggactcttgtgcacagtcacccctgcc
cttggggtctggagtgggcaggtgctcagaatcaacatctggacagagag
aggtgtcaaagctcttcactggtcatcactttgctatagcttggcttaga
gctcactgtgggatgttcttattgtttatttctgccaacccccccctccc
ttttgtaattagaaaatacattttgaaaatcctcatgatgacttcgagat
tcacctatcatactatgaaccacacaagattttagagtgccgcggagcct
cccaatcttctgccgactattttaccccttatatttaatttaaaaccttt
tccctttccggttggagtttggaattggaacctcgggaacttcctttcat
gttaagcaagcaatccccccctgggtaactacacaaacccattcccaatc
cctttccctttgaatttttg
gaattcaacattaaatgtttgggggcactggtcacatcggtgaggctatt
tgaaataaaggaaggaattgaattataatgtttccaggtgctattaaaat
aagtagccggtgtggaggcgcacacctttaatcccagcatgcaggaagcg
tggcaggtagatctctgaggccagtctggtctctagacagtgagtagtga
gttacaggaaaaccaaagataccatgtctcaaaaaagtatagattccctt
tctaaaacagcctcctttggattgcagcaagcacatggtaaaggttctga
aggactttccaagacattataaacagaacatcccatgtaagaatacgtcc
ttgcctttcttgatgggagtgaacaatatattattgtctgatctcaaact
ctcaatcctcctgcctctacttcacaagtctgacataagcatgtgctgca
acccctaactccacaactatctgtaatgtgaaatattatagacagacaga
tttctgacaaactcacttgtaaacaaaaaccacttctagaaaaataaata
cacaattttcctctagatttcaacagttgcttctctccttcttacctgta
aaaggataaagtaatggctggtgtttctctgcagcacagaccggagaaag
gaggccggagctatcctgccttttctctaggcctgagaccagcttccatt
tctctacataaacgtcaagccagccggccctttctaatcgggcttctaca
ctgccttccatttccttatctcatatctggaaggagccacttcaatatag
aacacatgcttaaacacacacacaccctgcatgtagccctgtaccccagc
catcccccagacagtactcaccactgtcaacaaacataatcctctcaaaa
tgccataagacatgtggaagcaaatgcctctgaggagagacatctgagat
aacttagatagatagatagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_83046766_83047865
seq2: B6Ng01-076O20.b_50_1169 (reverse)

seq1  CAAAAA-TCAA--GGGAAGGGAT--GGGATGGG--TGTGTAGTT--CCAG  41
      |||||| ||||  || |||||||  || |||||  |||||||||  ||||
seq2  CAAAAATTCAAAGGGAAAGGGATTGGGAATGGGTTTGTGTAGTTACCCAG  50

seq1  GGGGG--ATGCTTGCCTAACATG-AAGGAAG-TCCCGA-GTTCCAA-TCC  85
      |||||   ||||||| ||||||| ||||||| |||||| ||||||| |||
seq2  GGGGGGATTGCTTGCTTAACATGAAAGGAAGTTCCCGAGGTTCCAATTCC  100

seq1  AAACTCCAA-CAGAAAGAGAAAAGGTTTTAAATTAAATAT-AGGGGTAAA  133
      ||||||||| | ||||| |||||||||||||||||||||| |||||||||
seq2  AAACTCCAACCGGAAAGGGAAAAGGTTTTAAATTAAATATAAGGGGTAAA  150

seq1  ATAGTCGGCAGAAGATTGGGA-GCTCCGCGGCACTCTAAAATCTTGTGTG  182
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATAGTCGGCAGAAGATTGGGAGGCTCCGCGGCACTCTAAAATCTTGTGTG  200

seq1  GTTCATAGTATGATAGGTGAATCTCGAAGTCATCATGAGGATTTTCAAAA  232
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGTATGATAGGTGAATCTCGAAGTCATCATGAGGATTTTCAAAA  250

seq1  TGTATTTTCT-AGTACAAAAGGGA-GGGGGGGTTGGCAGAAATAAACAAT  280
      |||||||||| | ||||||||||| |||||||||||||||||||||||||
seq2  TGTATTTTCTAATTACAAAAGGGAGGGGGGGGTTGGCAGAAATAAACAAT  300

seq1  AAGAACATCCCACAGTGAGCTCTAAGCCAAGCTATAGCAAAGTGATGACC  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATCCCACAGTGAGCTCTAAGCCAAGCTATAGCAAAGTGATGACC  350

seq1  AGTGAAGAGCTTTGACACCTCTCTCTGTCCAGATGTTGATTCTGAGCACC  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGAGCTTTGACACCTCTCTCTGTCCAGATGTTGATTCTGAGCACC  400

seq1  TGCCCACTCCAGACCCCAAGGGCAGGGGTGACTGTGCACAAGAGTCCTGG  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACTCCAGACCCCAAGGGCAGGGGTGACTGTGCACAAGAGTCCTGG  450

seq1  GTGACTCCGGGCTGTGTTTCAGAGGTAAGCAGCCTGAGGCCCATTGGCAG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCCGGGCTGTGTTTCAGAGGTAAGCAGCCTGAGGCCCATTGGCAG  500

seq1  GATCCAATCTGGGCTGAGAGGATGTGGACTGGGGAGGCGGAGGGGGGGCC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAATCTGGGCTGAGAGGATGTGGACTGGGGAGGCGGAGGGGGGGCC  550

seq1  ACACACTGCTGAGTCCCTCAAAACCAAGCATCGGAGGGAGCATCTGAAAC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGCTGAGTCCCTCAAAACCAAGCATCGGAGGGAGCATCTGAAAC  600

seq1  GGACTGCTTTAAAGTCCTGGCGGTTACACAGATGTGGTCCTGAGAGCCTG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTTTAAAGTCCTGGCGGTTACACAGATGTGGTCCTGAGAGCCTG  650

seq1  TTTAGAGGTTTGAATAGGGAAAGGCGGCTGCTAGGACGCATCAGACCGAC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGGTTTGAATAGGGAAAGGCGGCTGCTAGGACGCATCAGACCGAC  700

seq1  AGAAGGATCTAGAAGGATCGGCGGGAAAGAGGAAGGGTGTTCTAGTGGAC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATCTAGAAGGATCGGCGGGAAAGAGGAAGGGTGTTCTAGTGGAC  750

seq1  TGCGCATGCTTGTGGTGATCAGCAGAGTGACAGATGGTGAACCCAGCTGC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCATGCTTGTGGTGATCAGCAGAGTGACAGATGGTGAACCCAGCTGC  800

seq1  CCTCTTATCAAAATAGGCATTAGAGCATTGGCCTTCAAAATAGACTACAG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTATCAAAATAGGCATTAGAGCATTGGCCTTCAAAATAGACTACAG  850

seq1  GACCTGAAGATCTGAGTTCGGATCCCCAACATCCACATAACAAGATCAGC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAAGATCTGAGTTCGGATCCCCAACATCCACATAACAAGATCAGC  900

seq1  ACGGTAAAGGGCAGCTGTAACCACAGCATTGAGGGTGTAAAGTCAGGAGA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTAAAGGGCAGCTGTAACCACAGCATTGAGGGTGTAAAGTCAGGAGA  950

seq1  TGGCCCAGAGGCTCCCGGCAGGCAGCCAGTCTACCAGAGCTCCAGCTTCA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAGAGGCTCCCGGCAGGCAGCCAGTCTACCAGAGCTCCAGCTTCA  1000

seq1  GTGAGAGACCCAATCTCAAAACAGAAGGGAAAGCTGAATGAGGTGATGTG  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGACCCAATCTCAAAACAGAAGGGAAAGCTGAATGAGGTGATGTG  1050

seq1  TGCCTTTAGAGAGGCAGAGGCAGGGGGATCTCTGTGATTCTGAGTTCAGC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAGAGAGGCAGAGGCAGGGGGATCTCTGTGATTCTGAGTTCAGC  1100

seq1  CTGGTCTGCATAGAGAATTC  1100
      ||||||||||||||||||||
seq2  CTGGTCTGCATAGAGAATTC  1120

seq1: chr18_82850104_82851096
seq2: B6Ng01-076O20.g_69_1039

seq1  GAATTCAACATTAAATGTTTGGGGGCACTGGTCACATCGGTGAGGCTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATTAAATGTTTGGGGGCACTGGTCACATCGGTGAGGCTATT  50

seq1  TGAAATAAAGGAAGGAATTGAATTATAATGTTTCCAGGTGCTATTAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAAGGAAGGAATTGAATTATAATGTTTCCAGGTGCTATTAAAAT  100

seq1  AAGTAGCCGGTGTGGAGGCGCACACCTTTAATCCCAGCATGCAGGAAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCCGGTGTGGAGGCGCACACCTTTAATCCCAGCATGCAGGAAGCG  150

seq1  TGGCAGGTAGATCTCTGAGGCCAGTCTGGTCTCTAGACAGTGAGTAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTAGATCTCTGAGGCCAGTCTGGTCTCTAGACAGTGAGTAGTGA  200

seq1  GTTACAGGAAAACCAAAGATACCATGTCTCAAAAAAGTATAGATTCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGGAAAACCAAAGATACCATGTCTCAAAAAAGTATAGATTCCCTT  250

seq1  TCTAAAACAGCCTCCTTTGGATTGCAGCAAGCACATGGTAAAGGTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACAGCCTCCTTTGGATTGCAGCAAGCACATGGTAAAGGTTCTGA  300

seq1  AGGACTTTCCAAGACATTATAAACAGAACATCCCATGTAAGAATACGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTCCAAGACATTATAAACAGAACATCCCATGTAAGAATACGTCC  350

seq1  TTGCCTTTCTTGATGGGAGTGAACAATATATTATTGTCTGATCTCAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTCTTGATGGGAGTGAACAATATATTATTGTCTGATCTCAAACT  400

seq1  CTCAATCCTCCTGCCTCTACTTCACAAGTCTGACATAAGCATGTGCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCCTCCTGCCTCTACTTCACAAGTCTGACATAAGCATGTGCTGCA  450

seq1  ACCCCTAACTCCACAACTATCTGTAATGTGAAATATTATAGACAGACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAACTCCACAACTATCTGTAATGTGAAATATTATAGACAGACAGA  500

seq1  TTTCTGACAAACTCACTTGTAAACAAAAACCACTTCTAGAAAAATAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACAAACTCACTTGTAAACAAAAACCACTTCTAGAAAAATAAATA  550

seq1  CACAATTTTCCTCTAGATTTCAACAGTTGCTTCTCTCCTTCTTACCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTTCCTCTAGATTTCAACAGTTGCTTCTCTCCTTCTTACCTGTA  600

seq1  AAAGGATAAAGTAATGGCTGGTGTTTCTCTGCAGCACAGACCGGAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATAAAGTAATGGCTGGTGTTTCTCTGCAGCACAGACCGGAGAAAG  650

seq1  GAGGCCGGAGCTATCCTGCCTTTTCTCTAGGCCTGAGACCAGCTTCCA-T  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAGGCCGGAGCTATCCTGCCTTTTCTCTAGGCCTGAGACCAGCTTCCATT  700

seq1  TCTCTACAT-AACGTCAAGCCAGCCGGCCC-TTCTAATCGGGCTTCTACA  747
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  TCTCTACATAAACGTCAAGCCAGCCGGCCCTTTCTAATCGGGCTTCTACA  750

seq1  CTGCCTTCCATTTCCTTATCTCATATCTGGAAGGAGCCAC-TCAATATAG  796
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGCCTTCCATTTCCTTATCTCATATCTGGAAGGAGCCACTTCAATATAG  800

seq1  AACACATGC-TAAACACACACACACCCTGCATGTAG-CCTGTACCCCAGC  844
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  AACACATGCTTAAACACACACACACCCTGCATGTAGCCCTGTACCCCAGC  850

seq1  CATCCCCCAAGACAGTACTCACCACTGTCAAACAAAACATAAATCCTCTC  894
      |||||||| ||||||||||||||||||||||   |||||| |||||||||
seq2  CATCCCCC-AGACAGTACTCACCACTGTCAA--CAAACAT-AATCCTCTC  896

seq1  AAAAATGCCATAAAGACAATGTGGAAGCAAAATGCCCTCTGAGGAAGAGA  944
       |||||||||| ||||| |||||||||| ||||| ||||||||| |||||
seq2  -AAAATGCCAT-AAGAC-ATGTGGAAGC-AAATG-CCTCTGAGG-AGAGA  940

seq1  CATCTGAGAATAACTATAAGATAAGATAAGATAAGATAGATAGATAGAT  993
      |||||||| |||||                 | ||||||||||||||||
seq2  CATCTGAG-ATAAC-----------------TTAGATAGATAGATAGAT  971