BAC Information

Click to search

BAC

Clone NameB6Ng01-077B12
Chromosome18 (Build37)
Map Location 21,241,093 - 21,357,031
singlet/doubletdoublet
Overlap geneMep1b, Gm944
Upstream geneDsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, EG622978
Downstream geneLOC665722, LOC225264, Klhl14, 4921528I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077B12.bB6Ng01-077B12.g
ACCDH893159DH893160
length1,102528
definitionDH893159|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B12, 5' end.DH893160|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,241,093 - 21,242,210)(21,356,498 - 21,357,031)
sequence
gaattcagcataggggctggagagatggctcagtggttaagagcactgga
ctgctcttccagaggtcctgagttcaattcccagcaaccacatggtagct
tacaaccatctgtaataagatctgatgccctcttctgatgtgtctgaaga
cagctacagggtactcatgtaaataaaataaataaatcttaaaaaaagag
ggagaattcagcatagatcctcccatttagataaagagactcttatattc
actgtatctatggtgatacagtttttcctgtttctttcactcagtgtact
gcacttttttttaatttggtgttattgtacgttatattttgtttttaatt
tcatatctcagagatccaattctactacgtaaatagatacatagtgcagt
tatgacacttaggttgacaatactccctaaaagtcatgaattacttaaca
aaatactccaataccttacatgagaaactattgcacaagtttaggtagat
aaagtggctcacataacagtatagaccattattgttgctcttggttgtct
ctcaagagtttgaaggtacatccctatctttttttttttttttttttttt
taggtattttcttcatttacatttcaaatgctatcccaaaagtcttccag
acacccccctcccctccccacccactcccacttcttggccctgatgttcc
cctgtactgaggcatataaagtttgcaagaccaaggggcctctcttccca
gtgatggctgactaggccatcttctgatacatatgcagctagagacagga
gctccacgggtactggttagttcatattgttgttccacctatagggttgc
agacccctacagctccttgggtattttctctagctcctccactgggggcc
ctgtgatccatccaatagctgactgtgagcatccacttctgtgtttgcca
ggcccgacatagccttctcatgttgtctttactcatattattctgtacgg
gtgtatgcacatgtgtccaactgtgtgtgggagtcagaggccttctccac
ctatggttcagaatgcatcactgtttgctggatctgatgctctgatgttc
tt
tgtagtcttaatgggtgtctgcccacctctgataaggctgtgctttgcag
ctgctgaaggctttgtttggagttgggggtggggggcaggagaaggagga
cttgagaatttgaaactttaaaagcactttgtaatcattttaacttatgt
gtgtcttccatttaagtttaggcatagtgaatttttgtaggaagcactta
atttcacatatataattccttacgtctacatatgagcagctgtgtacctc
catggagggaaacagattctttccacagtttcttcatggtgtggaaacta
atagtttaatccaccttttcagagaatctagttaagtcatgaacagcaaa
atttgatttttcactttctttttactgttttctgtccaagtccggggatg
caggaaggatctggagagggatggagacgtgggctgtggtgcggggatgc
tcgtgtcctcattgttcatagcgttactttgaatgtgtgtagcaggatct
taggtacttaacactatccttaagctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_21241093_21242210
seq2: B6Ng01-077B12.b_44_1145

seq1  GAATTCAGCATAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGA  50

seq1  CTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTAGCT  100

seq1  TACAACCATCTGTAATAAGATCTGATGCCCTCTTCTGATGTGTCTGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCATCTGTAATAAGATCTGATGCCCTCTTCTGATGTGTCTGAAGA  150

seq1  CAGCTACAGGGTACTCATGTAAATAAAATAAATAAATCTTAAAAAAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACAGGGTACTCATGTAAATAAAATAAATAAATCTTAAAAAAAGAG  200

seq1  GGAGAATTCAGCATAGATCCTCCCATTTAGATAAAGAGACTCTTATATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTCAGCATAGATCCTCCCATTTAGATAAAGAGACTCTTATATTC  250

seq1  ACTGTATCTATGGTGATACAGTTTTTCCTGTTTCTTTCACTCAGTGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATCTATGGTGATACAGTTTTTCCTGTTTCTTTCACTCAGTGTACT  300

seq1  GCACTTTTTTTTAATTTGGTGTTATTGTACGTTATATTTTGTTTTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTTTTTTAATTTGGTGTTATTGTACGTTATATTTTGTTTTTAATT  350

seq1  TCATATCTCAGAGATCCAATTCTACTACGTAAATAGATACATAGTGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTCAGAGATCCAATTCTACTACGTAAATAGATACATAGTGCAGT  400

seq1  TATGACACTTAGGTTGACAATACTCCCTAAAAGTCATGAATTACTTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACACTTAGGTTGACAATACTCCCTAAAAGTCATGAATTACTTAACA  450

seq1  AAATACTCCAATACCTTACATGAGAAACTATTGCACAAGTTTAGGTAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTCCAATACCTTACATGAGAAACTATTGCACAAGTTTAGGTAGAT  500

seq1  AAAGTGGCTCACATAACAGTATAGACCATTATTGTTGCTCTTGGTTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGCTCACATAACAGTATAGACCATTATTGTTGCTCTTGGTTGTCT  550

seq1  CTCAAGAGTTTGAAGGTACATCCCTATCTTTTTTTTTTTTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGTTTGAAGGTACATCCCTATCTTTTTTTTTTTTTTTTTTTTTT  600

seq1  TAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCTTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCTTCCAG  650

seq1  ACACCCCCCTCCCCTCCCCACCCACTCCCACTTCTTGGCCCTGATGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCCTCCCCTCCCCACCCACTCCCACTTCTTGGCCCTGATGTTCC  700

seq1  CCTGTACTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCA  750

seq1  GTGATGGCTGACTAGGCCATCTTCTGATACATATGCAGCTAGAGACAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCTGACTAGGCCATCTTCTGATACATATGCAGCTAGAGACAGGA  800

seq1  GCTCCACGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGC  850

seq1  AGACCCCTACAGCTCCTTGGGTATTTTCTCTAGCTCCTCCACTGGGGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTACAGCTCCTTGGGTATTTTCTCTAGCTCCTCCACTGGGGGCC  900

seq1  CTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCA  950

seq1  GGCCCCGACATAGCCTTCTCATGTTGTCTTTTAACTCATATTATTCCTGT  1000
      || ||||||||||||||||||||||||||||  |||||||||||| ||||
seq2  GG-CCCGACATAGCCTTCTCATGTTGTCTTT--ACTCATATTATT-CTGT  996

seq1  ACGGTGTGTATGCACATGTGTCACACTGTGTGTGGGAGTCAGAGGCCCTC  1050
      |||| |||||||||||||||||  ||||||||||||||||||||||| ||
seq2  ACGG-GTGTATGCACATGTGTCCAACTGTGTGTGGGAGTCAGAGGCCTTC  1045

seq1  TCCACCATATGGGTCCCAGAAATTGCATCACTGTTTGCTGAGATCCTGGG  1100
      |||||| ||||| |  |||||  ||||||||||||||||| ||||    |
seq2  TCCACC-TATGGTT--CAGAA--TGCATCACTGTTTGCTG-GATC---TG  1086

seq1  ATGCTCTGGAATGTTCTT  1118
      ||||||||  ||||||||
seq2  ATGCTCTG--ATGTTCTT  1102

seq1: chr18_21356498_21357031
seq2: B6Ng01-077B12.g_70_603 (reverse)

seq1  ATAGCTTGAGGATAGTGTTAAGTACCTAAGATCCTGCTACACACATTCAA  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTAAGGATAGTGTTAAGTACCTAAGATCCTGCTACACACATTCAA  50

seq1  AGTAACGCTCTGAACAATGAGGACACGAGCATCCCCGCACCACAGCCCAC  100
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACGCTATGAACAATGAGGACACGAGCATCCCCGCACCACAGCCCAC  100

seq1  GTCTCCATCCCTCTCCAGATCCTTCCTGCATCCCCGGACTTGGACAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATCCCTCTCCAGATCCTTCCTGCATCCCCGGACTTGGACAGAAA  150

seq1  ACAGTAAAAAGAAAGTGAAAAATCAAATTTTGCTGTTCATGACTTAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAAAGAAAGTGAAAAATCAAATTTTGCTGTTCATGACTTAACTA  200

seq1  GATTCTCTGAAAAGGTGGATTAAACTATTAGTTTCCACACCATGAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCTGAAAAGGTGGATTAAACTATTAGTTTCCACACCATGAAGAAA  250

seq1  CTGTGGAAAGAATCTGTTTCCCTCCATGGAGGTACACAGCTGCTCATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAAGAATCTGTTTCCCTCCATGGAGGTACACAGCTGCTCATATG  300

seq1  TAGACGTAAGGAATTATATATGTGAAATTAAGTGCTTCCTACAAAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACGTAAGGAATTATATATGTGAAATTAAGTGCTTCCTACAAAAATTC  350

seq1  ACTATGCCTAAACTTAAATGGAAGACACACATAAGTTAAAATGATTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCCTAAACTTAAATGGAAGACACACATAAGTTAAAATGATTACAA  400

seq1  AGTGCTTTTAAAGTTTCAAATTCTCAAGTCCTCCTTCTCCTGCCCCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTTAAAGTTTCAAATTCTCAAGTCCTCCTTCTCCTGCCCCCCAC  450

seq1  CCCCAACTCCAAACAAAGCCTTCAGCAGCTGCAAAGCACAGCCTTATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTCCAAACAAAGCCTTCAGCAGCTGCAAAGCACAGCCTTATCAG  500

seq1  AGGTGGGCAGACACCCATTAAGACTACAGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  AGGTGGGCAGACACCCATTAAGACTACAGAATTC  534