BAC Information

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BAC

Clone NameB6Ng01-077I16
ChromosomeY (Build37)18 (Build37)
Map Location 1,120,586 - 1,121,05478,524,445 - 78,525,667
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077I16.bB6Ng01-077I16.g
ACCDH893487DH893488
length9891,220
definitionDH893487|Mus musculus domesticus DNA, BAC clone: B6Ng01-077I16, 5' end.DH893488|Mus musculus domesticus DNA, BAC clone: B6Ng01-077I16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,586 - 1,121,054)(78,524,445 - 78,525,667)
sequence
gaattctttgtttagctctgaggcccatttttttttctttccatttttta
ttaggtatttagctcatttacatttccaatgctataccaaaagtccccca
tacccacccacccccactcccctacccgcccactccccctttttggccct
ggcgttcccctgttctggggcatataaagtttgtgtgtccaatgggcctc
tctttccagtgatggccgactaggccatcttttgatatatatgcagctag
agtcaagagctccggggtactggttagttcataatgttgatccacctgta
gggttgcagatccctttagctccttgggtactttctctagctcctccatt
gggagccctgtgatccatccattagctgactgtgggcatccacttctgtg
tttgctaggccccggcatagtctcacaagagacagctacatctgggtcct
ttcgataaaatcttgctagtgtatgcaatggtgtcagcgtttggatgctg
attatggggtggatccctggataaggcagtctctacatggtccatccttt
catctcagctccaaactttgtctctgtaactccttccaagggtgttttgt
tcccacttctaaggaggggcatagtgtccacacttcagtcttcatttttc
ttgagtttcatgtgtttaggaaattgtatcttatatcttggttatcctag
gttttgggctaatatccacttatcagtgagtacatattgtgtgagttcct
ttgtgaatgtgttacctcactcaggatgatgccctccaggtccatccatt
tggctaggaatttcataaattcattctttttaatagctgagtagtactcc
attgtgtagatgtaccacattttctgtatccattcctctgttgagggcat
ctgggttctttccagcttcttgctattataaattaagctgcttatgaaca
tagtgggagcatgtgtcttcttaccagttggggcatctt
gaattcaatggctattcttttggaagcatttcttatacatagataacgcc
accatttctgaactgcagtgactcattgtttgggacaaatgcatattcta
atgaatgctatatattttaacatattccaaacccctgcagttggttgaag
ctcagggtgcagttttaggatctgaataagtaaataaatgaggaagaaaa
tgtgtgttaattgcagtaatttgtgatactttcaaattcttaattaagaa
ataaaataggatcattagccatgaccactgtagatggcatacatagatca
ccattacaaccagatgcaagacccaaagtccttgccataaatgaaataac
agagggaggtcactggcacattatatccacagaaaaggaggcaagagaaa
cacacagaatgcccagacgttgtaagtgtcattttccttgacccagggat
tgcattattctgaaaccattgctttctgagtttggaggcctgcctctttc
tcctattctctggaatagattcttccttcaagctccataaaacatctctg
agcctaaccagccaccgtgttagcaattgcactggcctgactacctttct
tccctctccttgctgcaggcggtgtggggacttggactccggtctttgcc
tgactcattttcatggtgagctagtattttcaacaaaggagggaagaaaa
taaggacattgcttctaattagagccattcttatttgcgatgcattttaa
atttcaagcattagcttttcaatacatcacacaatttgtcattaaaaaaa
aaccctcatttctaggacaagcgagtacccagacattaactgggattgtc
cccaataaatcaggtgactgagaaatatccagataagttcctagggtaga
ggttggtgagggtaggcacagattttcagatatgcaagagaaagccgttt
ggtggtatgaaatatgaggatatatacatctgggagaaagagactggact
tcagcatgagcagagatggagggagatgatcaccatggtgtctgcagacc
agacaagcaatgcatctcggtgccctttttctccttctgagaggctggtg
cattctttaaggtggatgccagagagtgttgacactctctttgagccagc
acggtaagggtgtgcaatcacttgcagtcacgtcatatgtgatcagtgca
ttacaggaggattgagggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120586_1121054
seq2: B6Ng01-077I16.b_75_543

seq1  TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG  50
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTTCTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATG  50

seq1  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  100
      ||||||||||||||||||||| |||||||||||||||||||| ||| |||
seq2  CTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCGCCC  100

seq1  ACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTT  150
      |||||||||||||||||||||  ||||||||| |||||||||||||||||
seq2  ACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTTCTGGGGCATATAAAGTT  150

seq1  TGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  200
      ||   |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  200

seq1  TTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCA  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCA  250

seq1  TAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTAC  300
      ||| |||| ||||||| |||||||| |||||||||||||||||||| |||
seq2  TAATGTTGATCCACCTGTAGGGTTGCAGATCCCTTTAGCTCCTTGGGTAC  300

seq1  TTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACT  350
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACT  350

seq1  GTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAG  400
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGGGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAG  400

seq1  ACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGG  450
      |||||||||||||  ||||||| |||||||||||||||||||||||||||
seq2  ACAGCTACATCTGGGTCCTTTCGATAAAATCTTGCTAGTGTATGCAATGG  450

seq1  TGTCAGCGTTTGGATGCTG  469
      |||||||||||||||||||
seq2  TGTCAGCGTTTGGATGCTG  469

seq1: chr18_78524445_78525667
seq2: B6Ng01-077I16.g_70_1289

seq1  GAATTCAATGGCTATTCTTTTGGAAGCATTTCTTATACATAGATAACGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGCTATTCTTTTGGAAGCATTTCTTATACATAGATAACGCC  50

seq1  ACCATTTCTGAACTGCAGTGACTCATTGTTTGGGACAAATGCATATTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCTGAACTGCAGTGACTCATTGTTTGGGACAAATGCATATTCTA  100

seq1  ATGAATGCTATATATTTTAACATATTCCAAACCCCTGCAGTTGGTTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGCTATATATTTTAACATATTCCAAACCCCTGCAGTTGGTTGAAG  150

seq1  CTCAGGGTGCAGTTTTAGGATCTGAATAAGTAAATAAATGAGGAAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGTGCAGTTTTAGGATCTGAATAAGTAAATAAATGAGGAAGAAAA  200

seq1  TGTGTGTTAATTGCAGTAATTTGTGATACTTTCAAATTCTTAATTAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTAATTGCAGTAATTTGTGATACTTTCAAATTCTTAATTAAGAA  250

seq1  ATAAAATAGGATCATTAGCCATGACCACTGTAGATGGCATACATAGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGGATCATTAGCCATGACCACTGTAGATGGCATACATAGATCA  300

seq1  CCATTACAACCAGATGCAAGACCCAAAGTCCTTGCCATAAATGAAATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACAACCAGATGCAAGACCCAAAGTCCTTGCCATAAATGAAATAAC  350

seq1  AGAGGGAGGTCACTGGCACATTATATCCACAGAAAAGGAGGCAAGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGGTCACTGGCACATTATATCCACAGAAAAGGAGGCAAGAGAAA  400

seq1  CACACAGAATGCCCAGACGTTGTAAGTGTCATTTTCCTTGACCCAGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAATGCCCAGACGTTGTAAGTGTCATTTTCCTTGACCCAGGGAT  450

seq1  TGCATTATTCTGAAACCATTGCTTTCTGAGTTTGGAGGCCTGCCTCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATTCTGAAACCATTGCTTTCTGAGTTTGGAGGCCTGCCTCTTTC  500

seq1  TCCTATTCTCTGGAATAGATTCTTCCTTCAAGCTCCATAAAACATCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTCTCTGGAATAGATTCTTCCTTCAAGCTCCATAAAACATCTCTG  550

seq1  AGCCTAACCAGCCACCGTGTTAGCAATTGCACTGGCCTGACTACCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAACCAGCCACCGTGTTAGCAATTGCACTGGCCTGACTACCTTTCT  600

seq1  TCCCTCTCCTTGCTGCAGGCGGTGTGGGGACTTGGACTCCGGTCTTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCCTTGCTGCAGGCGGTGTGGGGACTTGGACTCCGGTCTTTGCC  650

seq1  TGACTCATTTTCATGGTGAGCTAGTATTTTCAACAAAGGAGGGAAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCATTTTCATGGTGAGCTAGTATTTTCAACAAAGGAGGGAAGAAAA  700

seq1  TAAGGACATTGCTTCTAATTAGAGCCATTCTTATTTGCGATGCATTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACATTGCTTCTAATTAGAGCCATTCTTATTTGCGATGCATTTTAA  750

seq1  ATTTCAAGCATTAGCTTTTCAATACATCACACAATTTGTCATTAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGCATTAGCTTTTCAATACATCACACAATTTGTCATTAAAAAAA  800

seq1  AACCCTCATTTCTAGGACAAGCGAGTACCCAGACATTAACTGGGATTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCATTTCTAGGACAAGCGAGTACCCAGACATTAACTGGGATTGTC  850

seq1  CCCAATAAATCAGGGTGACTGAGAAATATCCAGATAAGTTCCTAGGGTAG  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCCAATAAATCA-GGTGACTGAGAAATATCCAGATAAGTTCCTAGGGTAG  899

seq1  AGGTTGGTGAGGGTAGGCACAGATTTTCAGATATGCAAGAGAAAGCCGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGTGAGGGTAGGCACAGATTTTCAGATATGCAAGAGAAAGCCGTT  949

seq1  TGGTGGTATGAAATATGAGGATAATATACATCTGGGAGAAAGGAGACTGG  1000
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  TGGTGGTATGAAATATGAGGAT-ATATACATCTGGGAGAAA-GAGACTGG  997

seq1  ACTCCAGCAATGAGCAGAGATGGAGAGAGATGATCACCAT-GTGTCTGCA  1049
      ||| |||| |||||||||||||||| |||||||||||||| |||||||||
seq2  ACTTCAGC-ATGAGCAGAGATGGAGGGAGATGATCACCATGGTGTCTGCA  1046

seq1  GA-CAGACAAGCCATGCATCTCCGTGGCCCTTTTCT-CTTCTGAGATGCT  1097
      || ||||||||| ||||||||| ||| || |||||| ||||||||| |||
seq2  GACCAGACAAGCAATGCATCTCGGTGCCCTTTTTCTCCTTCTGAGAGGCT  1096

seq1  -GTGCAT--CTTAGTGTGGATGCCCAGGTAGGTGTGGACACTC-CTTGAA  1143
       ||||||   |||  ||||||| ||||  | |||| ||||||| |||  |
seq2  GGTGCATTCTTTAAGGTGGATG-CCAGAGA-GTGTTGACACTCTCTTTGA  1144

seq1  GGCAGGCACGTGAAGGTGTG-GGAGTCACTTGCAGTCAGCTCAGTGGTGA  1192
      | || |||||  |||| ||| | | |||||||||||||  |||   ||||
seq2  GCCA-GCACGGTAAGG-GTGTGCAATCACTTGCAGTCACGTCATATGTGA  1192

seq1  TCAGTGCATTAGTAGGAATGATTTGAGGGAT  1223
      |||||||||||  ||||  |  |||||||||
seq2  TCAGTGCATTA-CAGGA--GGATTGAGGGAT  1220