BAC Information

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BAC

Clone NameB6Ng01-078C20
Chromosome18 (Build37)
Map Location 26,684,786 - 26,810,249
singlet/doubletdoublet
Overlap genenone
Upstream geneBrunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
Downstream geneEG665977, EG665646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078C20.bB6Ng01-078C20.g
ACCDH893951DH893952
length1,1771,061
definitionDH893951|Mus musculus domesticus DNA, BAC clone: B6Ng01-078C20, 5' end.DH893952|Mus musculus domesticus DNA, BAC clone: B6Ng01-078C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,809,073 - 26,810,249)(26,684,786 - 26,685,560)
sequence
gaattctagattgatttcttctatttatttctagattatatagtatagat
caaaaatcatgccttgcatcaattatttatcatttatctatttgtaatac
attcatttgtacatttatttacttactcagtgctgggggtcaaacttgag
accctgtaaatgctgacaacttctcttctgtgggttgcattactactctt
ccttccttctttgacttgaactttaatttttgtactctttatataaccca
ggctcaccttgaacttgtaatcttcctgccttcccttactgggattacca
gtgttcattactcttcaaatatattaaaggatacttcattgtaaagacaa
tggtctcactggtggatattcaatgtgaactaggaaagagaggagccttt
gttttatgggtaaataactctactagtattgaaacctcactgaattttgg
ttttttctcttatcagaagacagaccctgaagtctatagtccaggactgt
caggttccccattcaatcctatctgatttccctttactagaaaatattaa
ggtagatatttatgtagacatttacagtacttgtgtctacttgaatagta
aagtatgtaaaatacctttgttgactaatatttccattcttatttccatc
ttttgcctttcattttgtacatagtttcatcagattcctcgggacaattt
ccttcactgcacctaggtttctgtttctgtttctttcttcctttggagag
gaaagttcttacagacagaggccttggctttaggtggagtcttcagagtg
actattgtcccatcaacatcaagcagctaaagggaaagtctcttttggat
cttcctagttttctaaagtataggaaaggactctgaagaagccttatccc
atctatcttcacgcaggaagaatcttaatcctcactgcacttagcccttt
ttcaatccatcagaactgtctagcggaatgcttgacattttggtggtatc
ctccccattgacaaatgatatgctcagcttcttttctgactgtcagctct
tgattggttgctggttcaggtcctcagttttgatggctagaagagcaatt
tctttttgtcggtgcgaattttcactatattccgtgtattgttgattctt
ttcgagcttcctcaggtcctgcaccac
gaattcttttttttatcagatattttcctcatttacatttcaaatgttat
acccgaagccccataaacccttcccccacgctgctccccaactcacccac
tcccgcttcctggccctgacattcccctgtactggggcatataatctttg
caataccaagggcgtctcctcccattgatgcccaactaggccatcctctg
ctacatatgcaaccagagacacagctctgggggttactggtgagttcata
tcgttgttcctcctatagggttgcagacccctttagctctttggttactt
tctctacctccttcattaaggtccctgtgatccatccaatagatgactgt
aggcatccacttctgtattgccaggcattggcacagagtcacatgagaga
gctatatcagggtcctgtcagcaaaatttttctggcatatgcaatagtgc
ctgggtttggtggttgtaggaattcttgataaaatacaaagtaagcaata
aaatttagtcattttgtttcattatttaagttgatgtaggcccaatatca
tggtgagggcatcgatgcaggaataggtgcactgaggaagcaggtacaag
aagtctcttatgtttcagtgaccaagaagcacagggtactgaaagccatt
gggaatataaatcacacagcccttcctatccctcagagatccactttatc
catatgggcaccacagtgtcccaacagagtgcccctaggtgaggaccagg
gatttaaataccagttgggggcagtttgtatccaaaatatctactacatt
tctgtaatcttggctcttctttgctaggccccaagctgtgaatctgggtc
ttttgattcttaatgtcattattttgtcttttttgcaggcttttgaagtg
aattgtacacacatgcacaaacacacacacacatccttttcttagtgttc
acaattagaatgtgaggattgaatcttacaagttcttatttgaatcattt
tttatgtagcagtgacatgaactatttttccatcttgccccatggtgtac
tcacaatacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_26809073_26810249
seq2: B6Ng01-078C20.b_46_1222 (reverse)

seq1  GTGGTGCA-GACATG-TGAGACTCGGAAAGACATCAAC-ATACACGGTA-  46
      |||||||| ||| ||  ||  |||| ||||| |||||| |||||||| | 
seq2  GTGGTGCAGGACCTGAGGAAGCTCGAAAAGA-ATCAACAATACACGGAAT  49

seq1  ATAGTGAAAATCTGCACGGACAAAAAGGGATTGCTTCTTCTAAACCCATC  96
      |||||||||||  |||| |||||||||  ||||| ||||||  | |||||
seq2  ATAGTGAAAATTCGCACCGACAAAAAGAAATTGC-TCTTCT--AGCCATC  96

seq1  AAAACTGAGACCCTGGAACAAGCAACCAATCAAGAGCCTGACAGTCAG-A  145
      |||||||||  ||| |||| |||||||||||||||| ||||||||||| |
seq2  AAAACTGAGGACCT-GAACCAGCAACCAATCAAGAG-CTGACAGTCAGAA  144

seq1  AAGAAGCTGAGACATTATCATTTGTTCAATGGGGAGGATACCACAAAAAT  195
      ||||||||||| || ||||||||| ||||||||||||||||||| |||| 
seq2  AAGAAGCTGAG-CA-TATCATTTG-TCAATGGGGAGGATACCACCAAAA-  190

seq1  TGTCAAGCATTCCGCTAGACAGTTCTGATGGATTG-AAAAGGGCTAAGTG  244
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTCAAGCATTCCGCTAGACAGTTCTGATGGATTGAAAAAGGGCTAAGTG  240

seq1  CAGTGAGGATTAAGATTCTT-CTGCGTGAAGATAGATGGG-TAAGGCTTC  292
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  CAGTGAGGATTAAGATTCTTCCTGCGTGAAGATAGATGGGATAAGGCTTC  290

seq1  TTCAGAGTCC-TTCCTATACTTTAGAAAACTAGGAAGATCC-AAAGAGAC  340
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  TTCAGAGTCCTTTCCTATACTTTAGAAAACTAGGAAGATCCAAAAGAGAC  340

seq1  TTTCCCTTTAGCTGCTTGATGTTGATGGGACAATAGTCACTCTGAAGACT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTAGCTGCTTGATGTTGATGGGACAATAGTCACTCTGAAGACT  390

seq1  CCACCTAAAGCCAAGGCCTCTGTCTGTAAGAACTTTCCTCTCCAAAGGAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTAAAGCCAAGGCCTCTGTCTGTAAGAACTTTCCTCTCCAAAGGAA  440

seq1  GAAAGAAACAGAAACAGAAACCTAGGTGCAGTGAAGGAAATTGTCCCGAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACAGAAACAGAAACCTAGGTGCAGTGAAGGAAATTGTCCCGAG  490

seq1  GAATCTGATGAAACTATGTACAAAATGAAAGGCAAAAGATGGAAATAAGA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGATGAAACTATGTACAAAATGAAAGGCAAAAGATGGAAATAAGA  540

seq1  ATGGAAATATTAGTCAACAAAGGTATTTTACATACTTTACTATTCAAGTA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATATTAGTCAACAAAGGTATTTTACATACTTTACTATTCAAGTA  590

seq1  GACACAAGTACTGTAAATGTCTACATAAATATCTACCTTAATATTTTCTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAGTACTGTAAATGTCTACATAAATATCTACCTTAATATTTTCTA  640

seq1  GTAAAGGGAAATCAGATAGGATTGAATGGGGAACCTGACAGTCCTGGACT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGGAAATCAGATAGGATTGAATGGGGAACCTGACAGTCCTGGACT  690

seq1  ATAGACTTCAGGGTCTGTCTTCTGATAAGAGAAAAAACCAAAATTCAGTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTTCAGGGTCTGTCTTCTGATAAGAGAAAAAACCAAAATTCAGTG  740

seq1  AGGTTTCAATACTAGTAGAGTTATTTACCCATAAAACAAAGGCTCCTCTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCAATACTAGTAGAGTTATTTACCCATAAAACAAAGGCTCCTCTC  790

seq1  TTTCCTAGTTCACATTGAATATCCACCAGTGAGACCATTGTCTTTACAAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGTTCACATTGAATATCCACCAGTGAGACCATTGTCTTTACAAT  840

seq1  GAAGTATCCTTTAATATATTTGAAGAGTAATGAACACTGGTAATCCCAGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATCCTTTAATATATTTGAAGAGTAATGAACACTGGTAATCCCAGT  890

seq1  AAGGGAAGGCAGGAAGATTACAAGTTCAAGGTGAGCCTGGGTTATATAAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGGCAGGAAGATTACAAGTTCAAGGTGAGCCTGGGTTATATAAA  940

seq1  GAGTACAAAAATTAAAGTTCAAGTCAAAGAAGGAAGGAAGAGTAGTAATG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAAAAATTAAAGTTCAAGTCAAAGAAGGAAGGAAGAGTAGTAATG  990

seq1  CAACCCACAGAAGAGAAGTTGTCAGCATTTACAGGGTCTCAAGTTTGACC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCACAGAAGAGAAGTTGTCAGCATTTACAGGGTCTCAAGTTTGACC  1040

seq1  CCCAGCACTGAGTAAGTAAATAAATGTACAAATGAATGTATTACAAATAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTGAGTAAGTAAATAAATGTACAAATGAATGTATTACAAATAG  1090

seq1  ATAAATGATAAATAATTGATGCAAGGCATGATTTTTGATCTATACTATAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGATAAATAATTGATGCAAGGCATGATTTTTGATCTATACTATAT  1140

seq1  AATCTAGAAATAAATAGAAGAAATCAATCTAGAATTC  1177
      |||||||||||||||||||||||||||||||||||||
seq2  AATCTAGAAATAAATAGAAGAAATCAATCTAGAATTC  1177

seq1: chr18_26684786_26685560
seq2: B6Ng01-078C20.g_353_1127

seq1  CTCTTTGGTTACTTTCTCTACCTCCTTCATTAAGGTCCCTGTGATCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGTTACTTTCTCTACCTCCTTCATTAAGGTCCCTGTGATCCATC  50

seq1  CAATAGATGACTGTAGGCATCCACTTCTGTATTGCCAGGCATTGGCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGATGACTGTAGGCATCCACTTCTGTATTGCCAGGCATTGGCACAG  100

seq1  AGTCACATGAGAGAGCTATATCAGGGTCCTGTCAGCAAAATTTTTCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATGAGAGAGCTATATCAGGGTCCTGTCAGCAAAATTTTTCTGGC  150

seq1  ATATGCAATAGTGCCTGGGTTTGGTGGTTGTAGGAATTCTTGATAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAATAGTGCCTGGGTTTGGTGGTTGTAGGAATTCTTGATAAAATA  200

seq1  CAAAGTAAGCAATAAAATTTAGTCATTTTGTTTCATTATTTAAGTTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAAGCAATAAAATTTAGTCATTTTGTTTCATTATTTAAGTTGATG  250

seq1  TAGGCCCAATATCATGGTGAGGGCATCGATGCAGGAATAGGTGCACTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCAATATCATGGTGAGGGCATCGATGCAGGAATAGGTGCACTGAG  300

seq1  GAAGCAGGTACAAGAAGTCTCTTATGTTTCAGTGACCAAGAAGCACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGTACAAGAAGTCTCTTATGTTTCAGTGACCAAGAAGCACAGGG  350

seq1  TACTGAAAGCCATTGGGAATATAAATCACACAGCCCTTCCTATCCCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAGCCATTGGGAATATAAATCACACAGCCCTTCCTATCCCTCAG  400

seq1  AGATCCACTTTATCCATATGGGCACCACAGTGTCCCAACAGAGTGCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCACTTTATCCATATGGGCACCACAGTGTCCCAACAGAGTGCCCCT  450

seq1  AGGTGAGGACCAGGGATTTAAATACCAGTTGGGGGCAGTTTGTATCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGACCAGGGATTTAAATACCAGTTGGGGGCAGTTTGTATCCAAA  500

seq1  ATATCTACTACATTTCTGTAATCTTGGCTCTTCTTTTGCTAGGCCCCAAA  550
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  ATATCTACTACATTTCTGTAATCTTGGCTCTTC-TTTGCTAGGCCCC-AA  548

seq1  GCTGTGAATCTGGGTCTTTTGATTCTTAATGTCATTATTTGTTCTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  GCTGTGAATCTGGGTCTTTTGATTCTTAATGTCATTATTTTGTCTTTTTT  598

seq1  GCAGGC-TTTGAAGTGAATTGTACACACATGCACAAACACACACACACAT  649
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTTTTGAAGTGAATTGTACACACATGCACAAACACACACACACAT  648

seq1  CC-TTTCTTAGTGTTCACAATTAGAATGTGAGGATTGAATCTTCACAAGT  698
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCTTTTCTTAGTGTTCACAATTAGAATGTGAGGATTGAATCTT-ACAAGT  697

seq1  TCATAATTG-ATCATTTTTTTATGTAGCAGTGACAATGAACTA-TTTTCC  746
      || || ||| |||| ||||||||||||||||||| |||||||| ||||||
seq2  TCTTATTTGAATCA-TTTTTTATGTAGCAGTGAC-ATGAACTATTTTTCC  745

seq1  ATCTTGCCCCAT-GTGTACTCCACATACAA  775
      |||||||||||| ||||||||   ||||||
seq2  ATCTTGCCCCATGGTGTACTCACAATACAA  775