BAC Information

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BAC

Clone NameB6Ng01-080J04
Chromosome18 (Build37)
Map Location 84,959,662 - 85,081,131
singlet/doubletdoublet
Overlap geneCyb5
Upstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik
Downstream geneFbxo15, 1700034H14Rik, LOC100039765, LOC665382, LOC545269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080J04.bB6Ng01-080J04.g
ACCDH895673DH895674
length1,132823
definitionDH895673|Mus musculus domesticus DNA, BAC clone: B6Ng01-080J04, 5' end.DH895674|Mus musculus domesticus DNA, BAC clone: B6Ng01-080J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,959,662 - 84,960,828)(85,080,311 - 85,081,131)
sequence
ggaattcatataaattgacttcttaggaacaaatcccataaagtaaaagt
tatacaagacaactgtaggccaagactcctatgggccaagattacagttc
aattcactattcattactttttctaatgaaaattcctcaaatggcctaat
gtaattagaccatgctacagtaggtcatgtgtaaaatttatactctagtt
atagctagctcagcaatgacatttcctgagaactctgattattcatagat
ctcgtgtaaaagtgcagtaccacctaagagaagcatttcaaagtcttgcc
agttacacaaactgactttttgtacaggagaaatgccttcttgccaatag
acagaatttcccataatagtaccagatcaggaagataaataatttcttct
tctatttcctatattccagagaaggaaacacatttcatgggatgacgcta
gatctctcccctgcaaactgtcctaacaaagaccagagcttaactacaat
aagactatctttcctggaggagaagggctcagctcaccacatagcaccta
gcctttcccagcaatcaggagcatgcatactttgtgcgctgtacagggct
tgcctgtcttaagagacgaagcaccagaagcaagttaaaattggattata
agaactctgaatgatgggctgaggagatagctcatcgggtaaaagtgtgt
agaatccttgcagaggactggagtttggtgaaccaatgtggctcacggct
ccagctctagaaaatcctagggccctgcagacacttagattcacatgctc
atatactaaaatgtacacacaattaacttgtaaaaagtcttttcaaaaaa
ccctcttagattttcctcttcccgtgagaggaggacaagaaagcacaggg
gaagccaccactgtgcaggtgactggaattagtgtgtagagtcactgtat
ttgtcacacacagacaactctagtttctcagctcagggaggtgaatttgc
tttccatagcatatctgcattagctgaccctgcactcagttgatgtattg
gatgacagatttggaaatcatcagttttttaacctcaacctatctattca
caatgaattatggaaatgtgacaaagtacctt
gaattctagggaggtgagcacagacttcaagtctgaacacttcctcccca
acactaggcatgcatttttcaagacatatcaaattctccgaaggtgtccg
attaatccctagatgcctcatggcccacgaggttcagacaggaggaggca
attttataaagaagcgttctgaaggtgaattatctgtgaatgagctgtcc
taacggaacacactaactcccaaagaaagagatgccagatattgagttca
agagcagagacaatatcccaatttacaatgttaaaaaaaagttatctttt
cgtggggttctaaagatggctgggtggctaagaacacttgctgctcttac
aaagaacggagttcagtccccagtactcatgaccatctgtaaaccaagta
tggaggatctgctgcccccttctggcctccatgggtaccagacatgcatg
tggtgcatatacatacatgcaagcaaaatacttatgtacataaaataaga
aatacatgaacttctagttatcagttttggattggaaatgtgcttaagac
cgtagagtgtttgcctagcttacacaaagtcataggtccgctttccagca
ctgcataaacccagaagcacagaaatacctatatcccagtgctggagaaa
tggaggcaggaggatcagatttcaagagcaccctttgccaccggatgagt
ttgaagccattctgaaaaatataagctcctgcctcaaaaaaaggacgggg
agggaaggtatactatttcttagtttttatttattgtctacacaagaatg
ttttgcctgcattattgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_84959662_84960828
seq2: B6Ng01-080J04.b_49_1179

seq1  GAATTCATATAAATTGACTTCTTAGGAACAAATCCCATAAAGTAAAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATAAATTGACTTCTTAGGAACAAATCCCATAAAGTAAAAGTT  50

seq1  ATACAAGACAACTGTAGGCCAAGACTCCTATGGGCCAAGATTACAGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGACAACTGTAGGCCAAGACTCCTATGGGCCAAGATTACAGTTCA  100

seq1  ATTCACTATTCATTACTTTTTCTAATGAAAATTCCTCAAATGGCCTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTATTCATTACTTTTTCTAATGAAAATTCCTCAAATGGCCTAATG  150

seq1  TAATTAGACCATGCTACAGTAGGTCATGTGTAAAATTTATACTCTAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGACCATGCTACAGTAGGTCATGTGTAAAATTTATACTCTAGTTA  200

seq1  TAGCTAGCTCAGCAATGACATTTCCTGAGAACTCTGATTATTCATAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGCTCAGCAATGACATTTCCTGAGAACTCTGATTATTCATAGATC  250

seq1  TCGTGTAAAAGTGCAGTACCACCTAAGAGAAGCATTTCAAAGTCTTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTAAAAGTGCAGTACCACCTAAGAGAAGCATTTCAAAGTCTTGCCA  300

seq1  GTTACACAAACTGACTTTTTGTACAGGAGAAATGCCTTCTTGCCAATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACAAACTGACTTTTTGTACAGGAGAAATGCCTTCTTGCCAATAGA  350

seq1  CAGAATTTCCCATAATAGTACCAGATCAGGAAGATAAATAATTTCTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTCCCATAATAGTACCAGATCAGGAAGATAAATAATTTCTTCTT  400

seq1  CTATTTCCTATATTCCAGAGAAGGAAACACATTTCATGGGATGACGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCCTATATTCCAGAGAAGGAAACACATTTCATGGGATGACGCTAG  450

seq1  ATCTCTCCCCTGCAAACTGTCCTAACAAAGACCAGAGCTTAACTACAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCCCTGCAAACTGTCCTAACAAAGACCAGAGCTTAACTACAATA  500

seq1  AGACTATCTTTCCTGGAGGAGAAGGGCTCAGCTCACCACATAGCACCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATCTTTCCTGGAGGAGAAGGGCTCAGCTCACCACATAGCACCTAG  550

seq1  CCTTTCCCAGCAATCAGGAGCATGCATACTTTGTGCGCTGTACAGGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCAGCAATCAGGAGCATGCATACTTTGTGCGCTGTACAGGGCTT  600

seq1  GCCTGTCTTAAGAGACGAAGCACCAGAAGCAAGTTAAAATTGGATTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTTAAGAGACGAAGCACCAGAAGCAAGTTAAAATTGGATTATAA  650

seq1  GAACTCTGAATGATGGGCTGAGGAGATAGCTCATCGGGTAAAAGTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGAATGATGGGCTGAGGAGATAGCTCATCGGGTAAAAGTGTGTA  700

seq1  GAATCCTTGCAGAGGACTGGAGTTTGGTGAACCAATGTGGCTCACGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTTGCAGAGGACTGGAGTTTGGTGAACCAATGTGGCTCACGGCTC  750

seq1  CAGCTCTAGAAAATCCTAGGGCCCTGCAGACACTTAGATTCACATGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTAGAAAATCCTAGGGCCCTGCAGACACTTAGATTCACATGCTCA  800

seq1  TATACTAAAATGTACACACAATTAACTTGTAAAAAGTCTTTTCAAAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAAAATGTACACACAATTAACTTGTAAAAAGTCTTTTCAAAAAAC  850

seq1  CCTCTTAGATTTTCCTCTTCCCGTGAGAGGAGGACAAAGAAAGCACAGGG  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTCTTAGATTTTCCTCTTCCCGTGAGAGGAGGAC-AAGAAAGCACAGGG  899

seq1  GAAGCCACCACTGTGCAGGTGACTGGAATTAGTGTGTAGAGTCACCTGTA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAGCCACCACTGTGCAGGTGACTGGAATTAGTGTGTAGAGTCA-CTGTA  948

seq1  TTTGTCACACACCAGACCAACTTCTAGGTTTTCTCAGCTCAGGGGAGGTG  1000
      ||||||||||| |||| |||| |||||  |||||||||||| ||||||||
seq2  TTTGTCACACA-CAGA-CAAC-TCTAG--TTTCTCAGCTCA-GGGAGGTG  992

seq1  AATTTGCTTTCCCATAGGCATTATCCTGCATTTTAGCCTGACCCTGCCAC  1050
      |||||||||| ||||| ||| ||| |||||  |||| ||||||||| |||
seq2  AATTTGCTTT-CCATA-GCA-TAT-CTGCA--TTAG-CTGACCCTG-CAC  1034

seq1  TCAGTTTGATGTATTTGGATTGAGCAGATTTTGGAAATTCATCAGTTTTT  1100
      |||| |||||||| ||||| ||| |||| |||||||| |||||||  |||
seq2  TCAG-TTGATGTA-TTGGA-TGA-CAGA-TTTGGAAA-TCATCAG--TTT  1076

seq1  TTTAACCTCAAACTTATCATAATTTTCACATATGAAATTTAAGTGGAAAG  1150
      ||||||||| ||| ||||    | |||||| |||||  |||  |||||| 
seq2  TTTAACCTC-AACCTATC----TATTCACA-ATGAA--TTA--TGGAAA-  1115

seq1  TGGTGACAAAGTACCTT  1167
        |||||||||||||||
seq2  -TGTGACAAAGTACCTT  1131

seq1: chr18_85080311_85081131
seq2: B6Ng01-080J04.g_66_888 (reverse)

seq1  CACACACA--TATGCAGGCAAAACATTCTTGTGTAGACAATAAATAAAAA  48
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  CACACACAATAATGCAGGCAAAACATTCTTGTGTAGACAATAAATAAAAA  50

seq1  CTAAGAAATAGTATACCTTCCCTCCCCGTCCTTTTTTTGAGGCAGGAGCT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAATAGTATACCTTCCCTCCCCGTCCTTTTTTTGAGGCAGGAGCT  100

seq1  TATATTTTTCAGAATGGCTTCAAACTCATCCGGTGGCAAAGGGTGCTCTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTCAGAATGGCTTCAAACTCATCCGGTGGCAAAGGGTGCTCTT  150

seq1  GAAATCTGATCCTCCTGCCTCCATTTCTCCAGCACTGGGATATAGGTATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGATCCTCCTGCCTCCATTTCTCCAGCACTGGGATATAGGTATT  200

seq1  TCTGTGCTTCTGGGTTTATGCAGTGCTGGAAAGCGGACCTATGACTTTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTTCTGGGTTTATGCAGTGCTGGAAAGCGGACCTATGACTTTGT  250

seq1  GTAAGCTAGGCAAACACTCTACGGTCTTAAGCACATTTCCAATCCAAAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTAGGCAAACACTCTACGGTCTTAAGCACATTTCCAATCCAAAAC  300

seq1  TGATAACTAGAAGTTCATGTATTTCTTATTTTATGTACATAAGTATTTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTAGAAGTTCATGTATTTCTTATTTTATGTACATAAGTATTTTG  350

seq1  CTTGCATGTATGTATATGCACCACATGCATGTCTGGTACCCATGGAGGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATGTATGTATATGCACCACATGCATGTCTGGTACCCATGGAGGCC  400

seq1  AGAAGGGGGCAGCAGATCCTCCATACTTGGTTTACAGATGGTCATGAGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGGGCAGCAGATCCTCCATACTTGGTTTACAGATGGTCATGAGTA  450

seq1  CTGGGGACTGAACTCCGTTCTTTGTAAGAGCAGCAAGTGTTCTTAGCCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACTGAACTCCGTTCTTTGTAAGAGCAGCAAGTGTTCTTAGCCAC  500

seq1  CCAGCCATCTTTAGAACCCCACGAAAAGATAACTTTTTTTTAACATTGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCATCTTTAGAACCCCACGAAAAGATAACTTTTTTTTAACATTGTA  550

seq1  AATTGGGATATTGTCTCTGCTCTTGAACTCAATATCTGGCATCTCTTTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGATATTGTCTCTGCTCTTGAACTCAATATCTGGCATCTCTTTCT  600

seq1  TTGGGAGTTAGTGTGTTCCGTTAGGACAGCTCATTCACAGATAATTCACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGTTAGTGTGTTCCGTTAGGACAGCTCATTCACAGATAATTCACC  650

seq1  TTCAGAACGCTTCTTTATAAAATTGCCTCCTCCTGTCTGAACCTCGTGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACGCTTCTTTATAAAATTGCCTCCTCCTGTCTGAACCTCGTGGG  700

seq1  CCATGAGGCATCTAGGGATTAATCGGACACCTTCGGAGAATTTGATATGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGGCATCTAGGGATTAATCGGACACCTTCGGAGAATTTGATATGT  750

seq1  CTTGAAAAATGCATGCCTAGTGTTGGGGAGGAAGTGTTCAGACTTGAAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAAATGCATGCCTAGTGTTGGGGAGGAAGTGTTCAGACTTGAAGT  800

seq1  CTGTGCTCACCTCCCTAGAATTC  821
      |||||||||||||||||||||||
seq2  CTGTGCTCACCTCCCTAGAATTC  823