BAC Information

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BAC

Clone NameB6Ng01-081F11
Chromosome18 (Build37)
Map Location 38,028,435 - 38,109,131
singlet/doubletdoublet
Overlap geneDiap1, Hdac3
Upstream geneEG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5
Downstream gene4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081F11.bB6Ng01-081F11.g
ACCDH896224DH896225
length1,052801
definitionDH896224|Mus musculus domesticus DNA, BAC clone: B6Ng01-081F11, 5' end.DH896225|Mus musculus domesticus DNA, BAC clone: B6Ng01-081F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,108,066 - 38,109,131)(38,028,435 - 38,029,225)
sequence
gaattccaggtgtgtctcactgcttggctttgcatagagcttttcatgat
gattttggcctgaagagttctgccgtatactcggtgtgctgcacatttgg
tgttgagtcacgtactgtcttggacagtttcttttcttttttttcttttg
tcttggttttttgagacaagagtttttctgggtagctctgtctgtcctgg
aacttactctgtagtcaaggttggcctctaactcacagagatctgtctgc
ctctgtctcctgagtgcttggatcaaaggtgtgtggcaccactgcccagt
ctctcctcctcctcctcctcttcttttttaaaaattcatttctgttgttt
ttcttcccagtttggtttccaggtctgagaatgcagagtcatctcttagg
ttgcagctggagtcctataaacattcttgggaagtaagggaacactccct
ctgggcatttgagatccctcagccagtccagcagatgtaaactatagctg
tgcttatatgggttctgtgtttcagaggagaatcagggattttttttctt
cctttctcctgttttaaaattaatttcaaatagtttcccgatgtgatggc
tagcacctattaatcccagctgagaagcctggggcaggaagcttgccata
atttgaggctagtctggtctgctatagtaggttccacaccagcctaggta
aattgtaatttaaaaataagtaatctgatattcatagccaaattataatt
tgggggaaaaaacaatttcagatctattccatcttatcaatctctcttcc
cattttacttttacctatttctctggtgttatttatttatttcagttatt
tgtttgtttattttctgagttaggttttttgtatgtagccgtagttgtcc
tgcatttagctctgtagacaaggctggcctcaacttaaagattcatctgc
tcgccttcaatgtgctaggataaagtgtgaccaccttgccttgctgggtg
ttatcttacatttcaataataaaattacttaactgtgccactccttcaca
at
gaattcacctaaactagaaatttctgaattatttgaacattgaacaaaaa
tcaagtaactctagagccaggtaggatatcaaatcagacaccagaaagta
ttttaaataggatgaaatcaacacttgacaaagaacaacggaatacacgg
aaaacaaaaacacaatgttggatttatgcccagatattttaaataagtat
gttagatataaacgtataacatataataattactgtgttgtaattacgac
aatggtattgctgggcagtggtcgcatacacctttaatcccaacagtcag
gaggcagaggcagggagatctgagtttgaggctagcctggtctataaagt
gaattcctggatagccagggatatatagacaccctatcttgaaatccatg
aacccccccccaaaaaaaaaccccactcaaatcaactgtatctatatccc
acatcttttgctatgtgcatggggaccctgtcaaactaccagaagaccag
catcagatatggtcatcaatggatcaaaaccctcccagaactacaacagt
cttggttcctcccataagactataagatttttgattcatattctgttgag
gcgttagtgtcaaaatgtctgacacacaatacatattcaatgaataaaga
tcaggatttgtcagctggacttgtttatatgaaaaaaaacaaaaaacaaa
aacaacctactttagggccagtgagatggctcaattagataaagtacttt
ttcatgtgttgtgagggactcgagttaggtcctagaacctcatgtaagcc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_38108066_38109131
seq2: B6Ng01-081F11.b_29_1081 (reverse)

seq1  ATTGTAGAAGGAGTTGCAACAGTAAAGTAATTTTATTATTTTGAAATGTA  50
      ||||| |||||||| || ||||| ||||||||||||||  ||||||||| 
seq2  ATTGT-GAAGGAGTGGC-ACAGTTAAGTAATTTTATTA--TTGAAATGT-  45

seq1  AAGATAAACACCACAGCAAGGCATGGTGGTGCACAACTTTAATCCTAGCA  100
      ||||| |||||| |||||||||| |||||| ||| ||||| |||||||||
seq2  AAGAT-AACACC-CAGCAAGGCAAGGTGGT-CAC-ACTTT-ATCCTAGCA  90

seq1  CATGGAAGGCAGAGGCAGATGAATCTTTAAGTTTGAGGCCAGCCTGGTCT  150
      ||| |||||| || ||||||||||||||||| ||||||||||||| ||||
seq2  CATTGAAGGC-GA-GCAGATGAATCTTTAAG-TTGAGGCCAGCCTTGTCT  137

seq1  ACAGAGCTAATTGCAGGACAACTACGGCTACATACAAAAACCCTAACTCA  200
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  ACAGAGCTAAATGCAGGACAACTACGGCTACATACAAAAAACCTAACTCA  187

seq1  GAAAATAAACAAACAAATAACTGAAATAAATAAATAAACACCAGAGAAAT  250
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAAATAAACAAACAAATAACTGAAATAAATAAAT-AACACCAGAGAAAT  236

seq1  AGGTAAAAGTAAAATGGGAAGAGAGATTGAT-AGATGGAATAGATCTGAA  299
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGTAAAAGTAAAATGGGAAGAGAGATTGATAAGATGGAATAGATCTGAA  286

seq1  ATTGTTTTTTCCCCCAAATTATAATTTGGCTATGAATATCAGATTACTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTTCCCCCAAATTATAATTTGGCTATGAATATCAGATTACTTA  336

seq1  TTTTTAAATTACAATTTACCTAGGCTGGTGTGGAACCTACTATAGCAGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATTACAATTTACCTAGGCTGGTGTGGAACCTACTATAGCAGAC  386

seq1  CAGACTAGCCTCAAATTATGGCAAGCTTCCTGCCCCAGGCTTCTCAGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAGCCTCAAATTATGGCAAGCTTCCTGCCCCAGGCTTCTCAGCTG  436

seq1  GGATTAATAGGTGCTAGCCATCACATCGGGAAACTATTTGAAATTAATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAATAGGTGCTAGCCATCACATCGGGAAACTATTTGAAATTAATTT  486

seq1  TAAAACAGGAGAAAGGAAGAAAAAAAATCCCTGATTCTCCTCTGAAACAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGGAGAAAGGAAGAAAAAAAATCCCTGATTCTCCTCTGAAACAC  536

seq1  AGAACCCATATAAGCACAGCTATAGTTTACATCTGCTGGACTGGCTGAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCATATAAGCACAGCTATAGTTTACATCTGCTGGACTGGCTGAGG  586

seq1  GATCTCAAATGCCCAGAGGGAGTGTTCCCTTACTTCCCAAGAATGTTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAAATGCCCAGAGGGAGTGTTCCCTTACTTCCCAAGAATGTTTAT  636

seq1  AGGACTCCAGCTGCAACCTAAGAGATGACTCTGCATTCTCAGACCTGGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCCAGCTGCAACCTAAGAGATGACTCTGCATTCTCAGACCTGGAA  686

seq1  ACCAAACTGGGAAGAAAAACAACAGAAATGAATTTTTAAAAAAGAAGAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTGGGAAGAAAAACAACAGAAATGAATTTTTAAAAAAGAAGAGG  736

seq1  AGGAGGAGGAGGAGAGACTGGGCAGTGGTGCCACACACCTTTGATCCAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGAGGAGAGACTGGGCAGTGGTGCCACACACCTTTGATCCAAG  786

seq1  CACTCAGGAGACAGAGGCAGACAGATCTCTGTGAGTTAGAGGCCAACCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGAGACAGAGGCAGACAGATCTCTGTGAGTTAGAGGCCAACCTT  836

seq1  GACTACAGAGTAAGTTCCAGGACAGACAGAGCTACCCAGAAAAACTCTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGAGTAAGTTCCAGGACAGACAGAGCTACCCAGAAAAACTCTTG  886

seq1  TCTCAAAAAACCAAGACAAAAGAAAAAAAAGAAAAGAAACTGTCCAAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAAACCAAGACAAAAGAAAAAAAAGAAAAGAAACTGTCCAAGAC  936

seq1  AGTACGTGACTCAACACCAAATGTGCAGCACACCGAGTATACGGCAGAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGTGACTCAACACCAAATGTGCAGCACACCGAGTATACGGCAGAAC  986

seq1  TCTTCAGGCCAAAATCATCATGAAAAGCTCTATGCAAAGCCAAGCAGTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGGCCAAAATCATCATGAAAAGCTCTATGCAAAGCCAAGCAGTGA  1036

seq1  GACACACCTGGAATTCC  1066
      |||||||||||||||||
seq2  GACACACCTGGAATTCC  1053

seq1: chr18_38028435_38029225
seq2: B6Ng01-081F11.g_55_855

seq1  GAATTCAGTTAAACTAGAAATTTCTGAATTATTTGAACATTGAACAAAAA  50
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTAAACTAGAAATTTCTGAATTATTTGAACATTGAACAAAAA  50

seq1  TCAAGTAACTCTAGAGCCAGGTAGGATATCAAATCAGACACCAGAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAACTCTAGAGCCAGGTAGGATATCAAATCAGACACCAGAAAGTA  100

seq1  TTTTAAATAGGATGAAATCAACACTTGACAAAGAACAACGGAATACACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAGGATGAAATCAACACTTGACAAAGAACAACGGAATACACGG  150

seq1  AAAACAAAAACACAATGTTGGATTTATGCCCAGATATTTTAAATAAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACACAATGTTGGATTTATGCCCAGATATTTTAAATAAGTAT  200

seq1  GTTAGATATAAACGTATAACATATAATAATTACTGTGTTGTAATTACGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATATAAACGTATAACATATAATAATTACTGTGTTGTAATTACGAC  250

seq1  AATGGTATTGCTGGGCAGTGGTCGCATACACCTTTAATCCCAACAGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTATTGCTGGGCAGTGGTCGCATACACCTTTAATCCCAACAGTCAG  300

seq1  GAGGCAGAGGCAGGGAGATCTGAGTTTGAGGCTAGCCTGGTCTATAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGGGAGATCTGAGTTTGAGGCTAGCCTGGTCTATAAAGT  350

seq1  GAATTCCTGGATAGCCAGGGATATATAGACACCCTATCTTGAAATCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGATAGCCAGGGATATATAGACACCCTATCTTGAAATCCATG  400

seq1  AACCCCCCCCCAAAAAAAAACCCCACTCAAATCAACTGTATCTATATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCCCCCAAAAAAAAACCCCACTCAAATCAACTGTATCTATATCCC  450

seq1  ACATCTTTTGCTATGTGCATGGGGACCCTGTCAAACTACCAGAAGACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTTGCTATGTGCATGGGGACCCTGTCAAACTACCAGAAGACCAG  500

seq1  CATCAGATATGGTCATCAATGGATCAAAACCCTCCCAGAACTACAACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATATGGTCATCAATGGATCAAAACCCTCCCAGAACTACAACAGT  550

seq1  CTTGGTTCCTCCCATAAGACTATAAGA-TTTTGATTCATATTCTGTTGAG  599
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTGGTTCCTCCCATAAGACTATAAGATTTTTGATTCATATTCTGTTGAG  600

seq1  GCGTTAGTGTC-AAATGTCTGACACACAATACATATTCAATGAATAAAGA  648
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCGTTAGTGTCAAAATGTCTGACACACAATACATATTCAATGAATAAAGA  650

seq1  TCAGGA-TTGTCAGCTGGACTTGTTTATATGAAAAAAAACAAAAA--CAA  695
      |||||| ||||||||||||||||||||||||||||||||||||||   ||
seq2  TCAGGATTTGTCAGCTGGACTTGTTTATATGAAAAAAAACAAAAAACAAA  700

seq1  AACAACCTAC-TTAGGGCCAGTGAGATGGCTCAA-TAGATAAAGTAC-TT  742
      |||||||||| ||||||||||||||||||||||| |||||||||||| ||
seq2  AACAACCTACTTTAGGGCCAGTGAGATGGCTCAATTAGATAAAGTACTTT  750

seq1  TTCATGTGTTGTGA-GGACCCGAGTTAGGTCCTAGAACC-CATGTAAGCC  790
      |||||||||||||| |||| ||||||||||||||||||| ||||||||||
seq2  TTCATGTGTTGTGAGGGACTCGAGTTAGGTCCTAGAACCTCATGTAAGCC  800

seq1  A  791
      |
seq2  A  801