BAC Information

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BAC

Clone NameB6Ng01-082L19
Chromosome18 (Build37)
Map Location 16,736,483 - 16,924,957
singlet/doubletdoublet
Overlap geneCdh2
Upstream geneChst9, LOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream geneLOC665519, 1700001G01Rik, 4921533I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082L19.bB6Ng01-082L19.g
ACCDH897204DH897205
length1,2201,079
definitionDH897204|Mus musculus domesticus DNA, BAC clone: B6Ng01-082L19, 5' end.DH897205|Mus musculus domesticus DNA, BAC clone: B6Ng01-082L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,736,483 - 16,737,702)(16,923,840 - 16,924,957)
sequence
gaattcactgctgtttgtgtggacatagcaataattactgctgtgaacac
cttatagatactcttcagaaaggtcttcctcctatgtctgtctgcagtct
catcacaacatttatctcaattccatgcttgatttctacaaagtaccaac
aatacatgaatgacaaaaaagaaagtggatatctgctcctttcccaggct
ccttcatgttgcctttctgatggaaatgggcgggcagtttatttgcagca
ctacagaatggtagagttgagtgtgacatatttcccatgctatttaagca
tggatcttctctcacttatacctcattctttttctttaacatctcacatg
ttgcccaaggatgccatatctgtctacaaggttcctaaaagaatcacttc
ctctccaaaagcaagatgtttagttgtggtttaaaattatgttaccgatc
ctcatgttaaaatgcctaagttactaagattaaaaacaaactcattatgt
aaagtctctcaaaaccttctagtgaattgagcaaaaaagttatttctcta
tttttgagactattgcggaaagatagcactcagttgtcaactctcttcca
ggctcgccttcaaaagtcaaaaacaatccaagaaactctatctgtccagt
ggttggtgagcaccaagctgtcagacatgccccctttgacctccatttgg
cataactgtagctttatagctatctgataggtcaattaggtaggatttga
taatatttgatggcaagatttcatctaatcctggccaatccagttccttt
cttctttgatgaactttttgcaagctgtttacatctctacctgttttctt
tggaaatcaccctgggtaggttcttaatcagtattcatcagtgaccagat
gaatcagacaagaccctctcaacacttttaggcaaattccaattactctt
ctcttgagaaattcttcactgcagatcagttgctcagacagtgccttagg
atggaagtcagttatcaatattttcaatatatctgtggaagcctctaatg
taccataactttgggaaagagtggtcactaacttggacgattcttcacta
tgtccttcctaacctctaggttgtcatttatctacacaaagatcatggct
ctctcttgggaatctttctttatacttgccctacaagtcctcatcttcag
aacaccacattttccatgtt
gaattccatattcttaacacacatgggcatgattgcctggctccttcatt
cctccaggtcccttggctgaacatcaaacagtttttttccagtggtgctt
gagcactttaggtcactcttgtctttaaaagagaggaaactgaggttttt
tttttttttttttccccagtagaacttaatactttgtgccctgatgtgtg
tgaccatggtactcctcctggctttgatgcaggttcaactcttctaggta
ggactggcattatttatggcgacattattttagctctagctagagttgaa
attaactcaagcccctccctgactctcagacaaacttatttccatcttga
ctggtaagatttatttttttatgcaagtgctagacatataacctgagtct
tttctaataaagagcctagctccacaatatatagagacctggtgacatgc
cagatacaatgtagccctaggaaaatatacctgaatttattttataagga
accaattgaatagaggagcaaacaaaagaaataaagaagtttcaggtaac
attaatcaaattgaaagaagtcacccttgcctgttctctcttcaccttct
ctctccctctctaaattatgaagttattaagaaatgatggatttcagctt
acagcaacttcacacatttgctaagactacactccaatccttggcccatg
ctttctatggagtagaattttttaatgccaggcattggagacagtgtgtg
cctacagctgaagcacaaaggcagaaacaagagtcagagcatctcagttt
ctgccacttcagatctctttctgaaaaatctttcttttacacatagaaaa
tgacctgcttttagatcacatgtgctatcaaaatgtggctttacatttat
ggagacaataattatatgtgtacatatggcatagaatagatcgagcaaac
tataggcccaggggacaaagggtcatgagatgagaatgggatgaggaaga
gatatgctcagcgcatatgactaaccagaaattccaggggcagctcttaa
gctcgctatggcatctacaatagatgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_16736483_16737702
seq2: B6Ng01-082L19.b_49_1268

seq1  GAATTCACTGCTGTTTGTGTGGACATAGCAATAATTACTGCTGTGAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCTGTTTGTGTGGACATAGCAATAATTACTGCTGTGAACAC  50

seq1  CTTATAGATACTCTTCAGAAAGGTCTTCCTCCTATGTCTGTCTGCAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGATACTCTTCAGAAAGGTCTTCCTCCTATGTCTGTCTGCAGTCT  100

seq1  CATCACAACATTTATCTCAATTCCATGCTTGATTTCTACAAAGTACCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAACATTTATCTCAATTCCATGCTTGATTTCTACAAAGTACCAAC  150

seq1  AATACATGAATGACAAAAAAGAAAGTGGATATCTGCTCCTTTCCCAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGAATGACAAAAAAGAAAGTGGATATCTGCTCCTTTCCCAGGCT  200

seq1  CCTTCATGTTGCCTTTCTGATGGAAATGGGCGGGCAGTTTATTTGCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGTTGCCTTTCTGATGGAAATGGGCGGGCAGTTTATTTGCAGCA  250

seq1  CTACAGAATGGTAGAGTTGAGTGTGACATATTTCCCATGCTATTTAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAATGGTAGAGTTGAGTGTGACATATTTCCCATGCTATTTAAGCA  300

seq1  TGGATCTTCTCTCACTTATACCTCATTCTTTTTCTTTAACATCTCACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTCTCTCACTTATACCTCATTCTTTTTCTTTAACATCTCACATG  350

seq1  TTGCCCAAGGATGCCATATCTGTCTACAAGGTTCCTAAAAGAATCACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAAGGATGCCATATCTGTCTACAAGGTTCCTAAAAGAATCACTTC  400

seq1  CTCTCCAAAAGCAAGATGTTTAGTTGTGGTTTAAAATTATGTTACCGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAAAGCAAGATGTTTAGTTGTGGTTTAAAATTATGTTACCGATC  450

seq1  CTCATGTTAAAATGCCTAAGTTACTAAGATTAAAAACAAACTCATTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTAAAATGCCTAAGTTACTAAGATTAAAAACAAACTCATTATGT  500

seq1  AAAGTCTCTCAAAACCTTCTAGTGAATTGAGCAAAAAAGTTATTTCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTCTCAAAACCTTCTAGTGAATTGAGCAAAAAAGTTATTTCTCTA  550

seq1  TTTTTGAGACTATTGCGGAAAGATAGCACTCAGTTGTCAACTCTCTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGACTATTGCGGAAAGATAGCACTCAGTTGTCAACTCTCTTCCA  600

seq1  GGCTCGCCTTCAAAAGTCAAAAACAATCCAAGAAACTCTATCTGTCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGCCTTCAAAAGTCAAAAACAATCCAAGAAACTCTATCTGTCCAGT  650

seq1  GGTTGGTGAGCACCAAGCTGTCAGACATGCCCCCTTTGACCTCCATTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTGAGCACCAAGCTGTCAGACATGCCCCCTTTGACCTCCATTTGG  700

seq1  CATAACTGTAGCTTTATAGCTATCTGATAGGTCAATTAGGTAGGATTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGTAGCTTTATAGCTATCTGATAGGTCAATTAGGTAGGATTTGA  750

seq1  TAATATTTGATGGCAAGATTTCATCTAATCCTGGCCAATCCAGTTCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTGATGGCAAGATTTCATCTAATCCTGGCCAATCCAGTTCCTTT  800

seq1  CTTCTTTGATGAACTTTTTGCAAGCTGTTTACATCTCTACCTGTTTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGATGAACTTTTTGCAAGCTGTTTACATCTCTACCTGTTTTCTT  850

seq1  TGGAAATCACCCTGGGTAGGTTCTTAATCAGTATTCATCAGTGACCAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCACCCTGGGTAGGTTCTTAATCAGTATTCATCAGTGACCAGAT  900

seq1  GAATCAGACAAGACCCTCTCAACACTTTTAGGCAAATTCCAATTACTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGACAAGACCCTCTCAACACTTTTAGGCAAATTCCAATTACTCTT  950

seq1  CTCTTGAGAAATTCTTCACTGCAGGATCAGTTGCTCAGACAGTGGCCTTA  1000
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  CTCTTGAGAAATTCTTCACTGCA-GATCAGTTGCTCAGACAGT-GCCTTA  998

seq1  GGATGGAAGTCAGTTATCAATATTTTCAATATATCTGTGGAAG-CTCTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGATGGAAGTCAGTTATCAATATTTTCAATATATCTGTGGAAGCCTCTAA  1048

seq1  TGTACCATAACTTTGGGAAAAGAGTGGTCAACTAACTT-GACGATTCTTC  1098
      ||||||||||||||||| ||||||||||| |||||||| |||||||||||
seq2  TGTACCATAACTTTGGG-AAAGAGTGGTC-ACTAACTTGGACGATTCTTC  1096

seq1  ACTATGTCC-TCCTACCTTCTTAGGTGTCA-TTATCTACACAAAGTATCT  1146
      ||||||||| ||||| | |||  | ||||| |||||||||||||| ||| 
seq2  ACTATGTCCTTCCTAACCTCTAGGTTGTCATTTATCTACACAAAG-ATCA  1145

seq1  TTGCTACTTCTTTGGATTCTTTC-TTATACTTGGCTCTTACAA-TGCTCA  1194
      | |||   |||| ||| |||||| |||||||||   | ||||| | ||||
seq2  TGGCTCTCTCTTGGGAATCTTTCTTTATACTTG--CCCTACAAGTCCTCA  1193

seq1  TCTTCAGA--ACCACATTTTTCCATGTT  1220
      ||||||||  |||||| |||||||||||
seq2  TCTTCAGAACACCACA-TTTTCCATGTT  1220

seq1: chr18_16923840_16924957
seq2: B6Ng01-082L19.g_69_1147 (reverse)

seq1  AGTCATCTATTGGTATGAATGCACACTAAGCGTATGCTTTTTAAAAAGAG  50
      ||||||||||||   |  ||||   |  ||||   ||||      |||||
seq2  AGTCATCTATTG---TAGATGC---CATAGCG--AGCTT------AAGAG  36

seq1  CTGCACTGTGAATATTCTTGGGTAAAGTTCATACTGCGCTGAGCATATTC  100
      |||| |   |||| ||||  ||| |   ||||| ||||||||||||| ||
seq2  CTGCCCCTGGAAT-TTCT--GGTTA--GTCATA-TGCGCTGAGCATA-TC  79

seq1  TCTTCCCTCCTTTCCCATTTCTCATCTCATGACCCTTTGGTCCCCTGGGC  150
      |||| ||||   ||||| |||||||||||||||||||| |||||||||| 
seq2  TCTT-CCTC--ATCCCA-TTCTCATCTCATGACCCTTT-GTCCCCTGGG-  123

seq1  CCTATAGTTTGGCTTCGATTCTAATTCTATGCCATATGTACACATATAAT  200
      |||||||||||   |||| ||| |||||||||||||||||||||||||| 
seq2  CCTATAGTTTG--CTCGA-TCT-ATTCTATGCCATATGTACACATATAA-  168

seq1  TTATGTGTCTCCATAAAATGTAAAAGCCACATTTTTGATAGCACATGTGA  250
      |||| ||||||||| |||||| ||||||||| ||||||||||||||||||
seq2  TTAT-TGTCTCCAT-AAATGT-AAAGCCACA-TTTTGATAGCACATGTGA  214

seq1  TTCTTAAAAGCAGGTCATTTTCTATGTGTAAAAAGAAAGATTTTTCAGAA  300
      |   ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  T--CTAAAAGCAGGTCATTTTCTATGTGT-AAAAGAAAGATTTTTCAGAA  261

seq1  AGAGATCTGAAGTGGCAGAAACTGAGATGCTCTGACTCTTGTTTCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTGAAGTGGCAGAAACTGAGATGCTCTGACTCTTGTTTCTGCCT  311

seq1  TTGTGCTTCAGCTGTAGGCACACACTGTCTCCAATGCCTGGCATTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTCAGCTGTAGGCACACACTGTCTCCAATGCCTGGCATTAAAAA  361

seq1  ATTCTACTCCATAGAAAGCATGGGCCAAGGATTGGAGTGTAGTCTTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACTCCATAGAAAGCATGGGCCAAGGATTGGAGTGTAGTCTTAGCA  411

seq1  AATGTGTGAAGTTGCTGTAAGCTGAAATCCATCATTTCTTAATAACTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGAAGTTGCTGTAAGCTGAAATCCATCATTTCTTAATAACTTCA  461

seq1  TAATTTAGAGAGGGAGAGAGAAGGTGAAGAGAGAACAGGCAAGGGTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAGAGAGGGAGAGAGAAGGTGAAGAGAGAACAGGCAAGGGTGACT  511

seq1  TCTTTCAATTTGATTAATGTTACCTGAAACTTCTTTATTTCTTTTGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAATTTGATTAATGTTACCTGAAACTTCTTTATTTCTTTTGTTTG  561

seq1  CTCCTCTATTCAATTGGTTCCTTATAAAATAAATTCAGGTATATTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTATTCAATTGGTTCCTTATAAAATAAATTCAGGTATATTTTCCT  611

seq1  AGGGCTACATTGTATCTGGCATGTCACCAGGTCTCTATATATTGTGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACATTGTATCTGGCATGTCACCAGGTCTCTATATATTGTGGAGC  661

seq1  TAGGCTCTTTATTAGAAAAGACTCAGGTTATATGTCTAGCACTTGCATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCTTTATTAGAAAAGACTCAGGTTATATGTCTAGCACTTGCATAA  711

seq1  AAAAATAAATCTTACCAGTCAAGATGGAAATAAGTTTGTCTGAGAGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATCTTACCAGTCAAGATGGAAATAAGTTTGTCTGAGAGTCAG  761

seq1  GGAGGGGCTTGAGTTAATTTCAACTCTAGCTAGAGCTAAAATAATGTCGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCTTGAGTTAATTTCAACTCTAGCTAGAGCTAAAATAATGTCGC  811

seq1  CATAAATAATGCCAGTCCTACCTAGAAGAGTTGAACCTGCATCAAAGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAATGCCAGTCCTACCTAGAAGAGTTGAACCTGCATCAAAGCCA  861

seq1  GGAGGAGTACCATGGTCACACACATCAGGGCACAAAGTATTAAGTTCTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGTACCATGGTCACACACATCAGGGCACAAAGTATTAAGTTCTAC  911

seq1  TGGGGAAAAAAAAAAAAAAAAAACCTCAGTTTCCTCTCTTTTAAAGACAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAAAAAAAAAAAAAAAACCTCAGTTTCCTCTCTTTTAAAGACAA  961

seq1  GAGTGACCTAAAGTGCTCAAGCACCACTGGAAAAAAACTGTTTGATGTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACCTAAAGTGCTCAAGCACCACTGGAAAAAAACTGTTTGATGTTC  1011

seq1  AGCCAAGGGACCTGGAGGAATGAAGGAGCCAGGCAATCATGCCCATGTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGGACCTGGAGGAATGAAGGAGCCAGGCAATCATGCCCATGTGT  1061

seq1  GTTAAGAATATGGAATTC  1118
      ||||||||||||||||||
seq2  GTTAAGAATATGGAATTC  1079