BAC Information

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BAC

Clone NameB6Ng01-083F17
Chromosome18 (Build37)
Map Location 90,165,769 - 90,166,974
singlet/doubletsinglet
Overlap genenone
Upstream geneRttn, Cd226, Dok6, LOC383320
Downstream geneLOC620693, Eif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083F17.bB6Ng01-083F17.g
ACCDH897642DH897643
length1,1871,158
definitionDH897642|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F17, 5' end.DH897643|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaactaacctgagataaaaattcactgacccccaatccctgaatg
ggacttgggcagtgacctaggctgtagtagtatggatttgaagctgacta
gatttaaggggcctacagagaacagcagagaggcatctatgcctgagaga
gcttttctgtgtttgcctccctgtatcctttactcctcaccctgcctccc
ctgtctccaaacagggacacagacaactcagatctttttacactcagctt
ctccctgtaaataaataattgggagacaaaggtacaaaggactccgagcc
agataattcatttctatagagagagaaataaaaccttttgatacttgaag
aaggtataaagatatagtgctctaataagtcttatgggatactcatattc
tgtctaacgtgggaattttgggtttaaattctggtttgacaagctgccac
ttgtaagtaggtgtagtacctaaagatgggaaattttacctgcagttcag
aaccagatagggaatattagttactgactccaagtagagaaagcagtgat
aatcacctgctatgaacagttattaattaaataaatgtctgtggctcctg
gtagagagcataacagatagataatgggtattaattaaataaatgtctgt
gactcaagatagaaagcaccctaataaggtcttacaggatactcatattc
tgtctaatatgggctccatgggaatgatgggtttaaatactggtttgaca
agctgcttcttacaagcaggtatagagagagtaaagtaaaggaacgtaaa
gaggaaaggagaggaaagaggaaaggaaaggagaggaaaggagtggaaag
gaaaagaaagaggcaatgtgggatattaaaaaactaaaaaaaagccagtg
aaatgatccctagtgatgttcttctgtacttgtagacagggcatagcatg
attgttatcagagaatcttcatccagcaactgatggaaacccacagccta
acatttgatggagcttgagaatcctgtggaaaagaaaaggaaggatttct
tggatccaagtgttaaggacagttatgaacacgatccatacatcacttac
taggctcataggatcacagagactgaacaacatcaggagctgcatgggtc
tgactagacattctgcattctgactggttccttgtgg
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcaacatccttagtcataagggaaatgcaaatcaaaacaaccctgagat
ttcacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtactaccactctggaaatcagtctggaggttcctca
gaaaattgcacatagtactaccagatgatcctgcaatacctctcctggtc
ataatccagaagatgttcctactgataagaaggacacatgctccactatg
ttcatatcagccttatttataatagccagaagctggaaaaaacccagatg
cccctcaacagaggattggataaagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaacaatgaatttgtgaaattcctaggcaaa
tggatagacctggagggcatcattctgagtgaggtaacccattgacaaag
gaactcacacaatatgtactcactgataagtggatattagcccagaaact
tagaatacccaagatatacgatacaatttgctaaacacatgaagctcaag
aagaaagaagaccaaagtgtggacactgcccctttttagaattgggaaca
aaacacccatggaaggagttacagagacaaagtttggagctgagatgaaa
ggatggaccatgtagagactgccatatccagggatccaccccataatcac
catccaaacgatgacaccattgcatacactagcaagattttattgaaagg
acccagatgtagctgtctcttgtgagactatgcccgggcctagcaaacac
agaagtggatgcttacagtcagctaatggatggatcacagggctcccaat
ggtgagctagagaaagtagccaggagctaaagggatctgcaccctatagg
tggaacaacattatgaactaacagtacccggagctctgactctagctgca
tatgtatcaaagatggcctatcgcatcactggaaagagagccatgtcatg
ccatctttaatgcctcaatacaggaatgcaaggcagaattggaatgggtt
ggtcgcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_90165769_90166974
seq2: B6Ng01-083F17.b_50_1236 (reverse)

seq1  CCACAAGTAGACCCCAGTTCAGAAATATGCAGATAGTCTAGGTCAGACCC  50
      ||||||| |    |||| |||||   |||||||  ||||| |||||||||
seq2  CCACAAGGA---ACCAG-TCAGA---ATGCAGAATGTCTA-GTCAGACCC  42

seq1  ATGCAGGCTCCCTGATTGTTGGTTCAGTCTCTGTGATCCCCTATGAGCCT  100
      ||||| ||| ||||| |||| ||||||||||||||||  |||||||||||
seq2  ATGCA-GCT-CCTGA-TGTT-GTTCAGTCTCTGTGAT--CCTATGAGCCT  86

seq1  AGGTTAGTTGATGTTATGGATCGTGTTCATAACTGTCCTTAACACCTTTG  150
      ||  ||  ||||| |||||||||||||||||||||||||||||||  |||
seq2  AG--TAAGTGATG-TATGGATCGTGTTCATAACTGTCCTTAACAC--TTG  131

seq1  GATCC-AGAAATCCTTCCTCTTCTTTTCCACAGGATTCTCAAGCTCCATC  199
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATCCAAGAAATCCTTCCTTTTCTTTTCCACAGGATTCTCAAGCTCCATC  181

seq1  AAATGTTAGGCTGTGGGTTTCCATCAGTTGCTGGATGAAGATTCTCTGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAGGCTGTGGGTTTCCATCAGTTGCTGGATGAAGATTCTCTGAT  231

seq1  AACAATCATGCTATGCCCTGTCTACAAGTACAGAAGAACATCACTAGGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCATGCTATGCCCTGTCTACAAGTACAGAAGAACATCACTAGGGA  281

seq1  TCATTTCACTGGCTTTTTTTTTAGTTTTTTAATATCCCACATTGCCTCTT  349
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCATTTCACTGGC-TTTTTTTTAGTTTTTTAATATCCCACATTGCCTCTT  330

seq1  TCTTTTCCTTTCCACTCCTTTCCTCTCCTTTCCTTTCCTCTTTCCTCTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTTTCCACTCCTTTCCTCTCCTTTCCTTTCCTCTTTCCTCTCC  380

seq1  TTTCCTCTTTACGTTCCTTTACTTTACTCTCTCTATACCTGCTTGTAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTTACGTTCCTTTACTTTACTCTCTCTATACCTGCTTGTAAGA  430

seq1  AGCAGCTTGTCAAACCAGTATTTAAACCCATCATTCCCATGGAGCCCATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTGTCAAACCAGTATTTAAACCCATCATTCCCATGGAGCCCATA  480

seq1  TTAGACAGAATATGAGTATCCTGTAAGACCTTATTAGGGTGCTTTCTATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGAATATGAGTATCCTGTAAGACCTTATTAGGGTGCTTTCTATC  530

seq1  TTGAGTCACAGACATTTATTTAATTAATACCCATTATCTATCTGTTATGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCACAGACATTTATTTAATTAATACCCATTATCTATCTGTTATGC  580

seq1  TCTCTACCAGGAGCCACAGACATTTATTTAATTAATAACTGTTCATAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCAGGAGCCACAGACATTTATTTAATTAATAACTGTTCATAGCA  630

seq1  GGTGATTATCACTGCTTTCTCTACTTGGAGTCAGTAACTAATATTCCCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTATCACTGCTTTCTCTACTTGGAGTCAGTAACTAATATTCCCTA  680

seq1  TCTGGTTCTGAACTGCAGGTAAAATTTCCCATCTTTAGGTACTACACCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCTGAACTGCAGGTAAAATTTCCCATCTTTAGGTACTACACCTA  730

seq1  CTTACAAGTGGCAGCTTGTCAAACCAGAATTTAAACCCAAAATTCCCACG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAGTGGCAGCTTGTCAAACCAGAATTTAAACCCAAAATTCCCACG  780

seq1  TTAGACAGAATATGAGTATCCCATAAGACTTATTAGAGCACTATATCTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGAATATGAGTATCCCATAAGACTTATTAGAGCACTATATCTTT  830

seq1  ATACCTTCTTCAAGTATCAAAAGGTTTTATTTCTCTCTCTATAGAAATGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTCTTCAAGTATCAAAAGGTTTTATTTCTCTCTCTATAGAAATGA  880

seq1  ATTATCTGGCTCGGAGTCCTTTGTACCTTTGTCTCCCAATTATTTATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGGCTCGGAGTCCTTTGTACCTTTGTCTCCCAATTATTTATTTA  930

seq1  CAGGGAGAAGCTGAGTGTAAAAAGATCTGAGTTGTCTGTGTCCCTGTTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGAAGCTGAGTGTAAAAAGATCTGAGTTGTCTGTGTCCCTGTTTG  980

seq1  GAGACAGGGGAGGCAGGGTGAGGAGTAAAGGATACAGGGAGGCAAACACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGGAGGCAGGGTGAGGAGTAAAGGATACAGGGAGGCAAACACA  1030

seq1  GAAAAGCTCTCTCAGGCATAGATGCCTCTCTGCTGTTCTCTGTAGGCCCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTCTCTCAGGCATAGATGCCTCTCTGCTGTTCTCTGTAGGCCCC  1080

seq1  TTAAATCTAGTCAGCTTCAAATCCATACTACTACAGCCTAGGTCACTGCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTAGTCAGCTTCAAATCCATACTACTACAGCCTAGGTCACTGCC  1130

seq1  CAAGTCCCATTCAGGGATTGGGGGTCAGTGAATTTTTATCTCAGGTTAGT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCCATTCAGGGATTGGGGGTCAGTGAATTTTTATCTCAGGTTAGT  1180

seq1  TGAATTC  1206
      |||||||
seq2  TGAATTC  1187