BAC Information

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BAC

Clone NameB6Ng01-084J17
Chromosome18 (Build37)
Map Location 86,340,840 - 86,467,748
singlet/doubletdoublet
Overlap geneLOC665402
Upstream geneLOC665382, LOC545269, LOC545270
Downstream geneNeto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084J17.bB6Ng01-084J17.g
ACCDH898515DH898516
length1,1471,130
definitionDH898515|Mus musculus domesticus DNA, BAC clone: B6Ng01-084J17, 5' end.DH898516|Mus musculus domesticus DNA, BAC clone: B6Ng01-084J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,466,585 - 86,467,748)(86,340,840 - 86,341,982)
sequence
gaattcacattttcggtatatgatttaacctatgcctgtgctacttctgc
tggcattatgacctatgaacttacatggagccagattccacactgccact
cacagcatcctcagatcacaggattcattttatttttagttagaaaaata
aaaggaaactgctttctgcttctgggtgagaccagagtaatgtcaagata
gaaagtaaaagatctatggagatctatgaagaggaagtcaaagcaagatg
ggagagagggggagtgacgttcaaaaagcgaataatatgtgggcatttaa
atcacactaaaactcatggcaaatttctattccatctcattgcatggctc
tgttttgctttggtcaattccacaataatttttttctgtgaccacaacct
tcaatgggataaaaatttcaagttatttatcagacatccatgatcatgta
tcttagagtccatggggatgttattctaagccgtcatcaaataatcccac
agatgttgttcatattctgtgcatttatgcagatatctgccctggttctc
cctaaggaaaacaaaacttaacataatgtttactgagctaacagtgtgct
ccacagagaatcagaaaggaaacatttgttatatctctagtctgaaactc
acaaatacaagggatagatagatttttagagcttcaaatatttcacaatt
cttttgaaacaataaaacagttgataaattatttaaagaagtgtacatac
attatgcatggagacagattcctgggctctatcatgtaggtgctagaatt
tgcagcagacctgtgccttcaaaatagctacattctggatatcagaggaa
gctcatctcttccaaccagcaacagaacttcctgtgttgctgcacataca
agtttgccaaatccaactaaactaactaaagtgaattcctcaaggcagac
cagtgtaagcgttatcacactatctctcctgataggaaactcagcaagaa
acacagtgcctagtctaagtcatagaagcataaagggtgaccacattgct
aatctcagaacgttggattatcgactcatatctgagccacagtgaagaaa
attccatattgctgttcaaagtatttttatctattacgtacagaaca
gaattcctaataaagaggacaactgtgagactggactctggagctaaata
gccttaggtttcaatccatcctgtcactcactgagtaacactgaaaatta
attagctgcttaaagtctgtctcctcacctgtaaaatgcagccattataa
aaactgcccagggacccattataacttcacgaggcagtgactttcttcac
tgatggatccttggcacctgcagcgtagactgctacctgaccgactgctg
ctgaatgaatccagagcacaatgcttataaaatggaaatcacgtaatttc
attaatatctattgtcatttttttgttacacatgaacaattgcagaaata
atggcaccaaaatgggtgactttagaaaatgccaaaagaacattgcatac
ttttatctacaaaacatcatcatgctaccttgttctggaggatatgacct
cattaaggatctatatacctctcctctttctacttacctgtagatttatt
tcaaccagaaatatatgttgaatcttatcatatcctatttgagggtgaaa
aacataagttttactttattgaactgacaacactaacatgactatacttt
ttgtgatttgaaaatcatacacagcaaaggaaacatctacaggaagttgg
aatattgtgtcatagtgataattcaataattggtggcttttgtatcttct
ttataaagaggcttgaaatctttttaaaatacgacttttaaagacttgcc
tgttgggatattttggccacacctttgaagactggtgttgtttatgatca
agaagtatgtactatgtgttgacattttctttattgacttaaaacccttt
tgcccccaaaatagtttttctctcttcattgcattttctcaatttagtgt
tactttttctgatgttctgttatgaactattgttcatttgcattttcacg
tttttatgccattgctaaagagttatattctagagatgcaagtgacacct
tgaagcagtaataaattttttattttattttaatcatttatttgagggat
tatttaaattattttatttattgctctctcctgccttatgacttgcttgc
tggtgtctccaaggccagaatagtgtcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_86466585_86467748
seq2: B6Ng01-084J17.b_42_1188 (reverse)

seq1  TGTTCTTGACGTAAATAG-TAAAAATACTTTTAAACAGCAAATAT-GAAT  48
      ||||||  |||| ||||| ||||||||| ||| |||||| ||||| ||||
seq2  TGTTCTGTACGT-AATAGATAAAAATAC-TTTGAACAGC-AATATGGAAT  47

seq1  TTTCTTCACTGTGGCTTCAGATATTGAGGTCGATAAATCCAACGTTCTGA  98
      ||||||||||||||| ||||||| ||| |||||| |||||||||||||||
seq2  TTTCTTCACTGTGGC-TCAGATA-TGA-GTCGAT-AATCCAACGTTCTGA  93

seq1  GATTAGCAATGTGGTCCACCCCTTTATGCCTTCTATGACCTTAGACTAGG  148
      ||||||||||||||||   ||||||||| ||||||||| |||||||||||
seq2  GATTAGCAATGTGGTC--ACCCTTTATG-CTTCTATGA-CTTAGACTAGG  139

seq1  CACTTGTGTTTCTTTGCCTGAGTTTTCCTATCAGGGAGAGAATAGTTGTG  198
      ||| ||||||||||   ||||| |||||||||| |||||| |||| ||||
seq2  CAC-TGTGTTTCTT--GCTGAG-TTTCCTATCA-GGAGAG-ATAG-TGTG  182

seq1  ATAACGCTTACACTGGTCTGCCTTGAGGAATTCACTTTAGTTAGTTTAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGCTTACACTGGTCTGCCTTGAGGAATTCACTTTAGTTAGTTTAGT  232

seq1  TGGATTTGGCAAACCTTGTATGTGCAGCAACACAGGAAGTTCTGTTGCTG  298
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGATTTGGCAAA-CTTGTATGTGCAGCAACACAGGAAGTTCTGTTGCTG  281

seq1  GTTGGAAGAGATGAGCTTCCTCTGATATCCAGAATGTAGCTATTTTGAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAGAGATGAGCTTCCTCTGATATCCAGAATGTAGCTATTTTGAAG  331

seq1  GCACAGGTCTGCTGCAAATTCTAGCACCTACATGATAGAGCCCAGGAATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTCTGCTGCAAATTCTAGCACCTACATGATAGAGCCCAGGAATC  381

seq1  TGTCTCCATGCATAATGTATGTACACTTCTTTAAATAATTTATCAACTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCATGCATAATGTATGTACACTTCTTTAAATAATTTATCAACTGT  431

seq1  TTTATTGTTTCAAAAGAATTGTGAAATATTTGAAGCTCTAAAAATCTATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTTTCAAAAGAATTGTGAAATATTTGAAGCTCTAAAAATCTATC  481

seq1  TATCCCTTGTATTTGTGAGTTTCAGACTAGAGATATAACAAATGTTTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTTGTATTTGTGAGTTTCAGACTAGAGATATAACAAATGTTTCCT  531

seq1  TTCTGATTCTCTGTGGAGCACACTGTTAGCTCAGTAAACATTATGTTAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTCTCTGTGGAGCACACTGTTAGCTCAGTAAACATTATGTTAAG  581

seq1  TTTTGTTTTCCTTAGGGAGAACCAGGGCAGATATCTGCATAAATGCACAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTCCTTAGGGAGAACCAGGGCAGATATCTGCATAAATGCACAG  631

seq1  AATATGAACAACATCTGTGGGATTATTTGATGACGGCTTAGAATAACATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAACAACATCTGTGGGATTATTTGATGACGGCTTAGAATAACATC  681

seq1  CCCATGGACTCTAAGATACATGATCATGGATGTCTGATAAATAACTTGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGACTCTAAGATACATGATCATGGATGTCTGATAAATAACTTGAA  731

seq1  ATTTTTATCCCATTGAAGGTTGTGGTCACAGAAAAAAATTATTGTGGAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATCCCATTGAAGGTTGTGGTCACAGAAAAAAATTATTGTGGAAT  781

seq1  TGACCAAAGCAAAACAGAGCCATGCAATGAGATGGAATAGAAATTTGCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAAGCAAAACAGAGCCATGCAATGAGATGGAATAGAAATTTGCCA  831

seq1  TGAGTTTTAGTGTGATTTAAATGCCCACATATTATTCGCTTTTTGAACGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTAGTGTGATTTAAATGCCCACATATTATTCGCTTTTTGAACGT  881

seq1  CACTCCCCCTCTCTCCCATCTTGCTTTGACTTCCTCTTCATAGATCTCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCCTCTCTCCCATCTTGCTTTGACTTCCTCTTCATAGATCTCCA  931

seq1  TAGATCTTTTACTTTCTATCTTGACATTACTCTGGTCTCACCCAGAAGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTTTTACTTTCTATCTTGACATTACTCTGGTCTCACCCAGAAGCA  981

seq1  GAAAGCAGTTTCCTTTTATTTTTCTAACTAAAAATAAAATGAATCCTGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGTTTCCTTTTATTTTTCTAACTAAAAATAAAATGAATCCTGTG  1031

seq1  ATCTGAGGATGCTGTGAGTGGCAGTGTGGAATCTGGCTCCATGTAAGTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGATGCTGTGAGTGGCAGTGTGGAATCTGGCTCCATGTAAGTTC  1081

seq1  ATAGGTCATAATGCCAGCAGAAGTAGCACAGGCATAGGTTAAATCATATA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCATAATGCCAGCAGAAGTAGCACAGGCATAGGTTAAATCATATA  1131

seq1  CCGAAAATGTGAATTC  1164
      ||||||||||||||||
seq2  CCGAAAATGTGAATTC  1147

seq1: chr18_86340840_86341982
seq2: B6Ng01-084J17.g_67_1196

seq1  GAATTCCTAATAAAGAGGACAACTGTGAGACTGGACTCTGGAGCTAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATAAAGAGGACAACTGTGAGACTGGACTCTGGAGCTAAATA  50

seq1  GCCTTAGGTTTCAATCCATCCTGTCACTCACTGAGTAACACTGAAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGGTTTCAATCCATCCTGTCACTCACTGAGTAACACTGAAAATTA  100

seq1  ATTAGCTGCTTAAAGTCTGTCTCCTCACCTGTAAAATGCAGCCATTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTGCTTAAAGTCTGTCTCCTCACCTGTAAAATGCAGCCATTATAA  150

seq1  AAACTGCCCAGGGACCCATTATAACTTCACGAGGCAGTGACTTTCTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCCCAGGGACCCATTATAACTTCACGAGGCAGTGACTTTCTTCAC  200

seq1  TGATGGATCCTTGGCACCTGCAGCGTAGACTGCTACCTGACCGACTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGATCCTTGGCACCTGCAGCGTAGACTGCTACCTGACCGACTGCTG  250

seq1  CTGAATGAATCCAGAGCACAATGCTTATAAAATGGAAATCACGTAATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGAATCCAGAGCACAATGCTTATAAAATGGAAATCACGTAATTTC  300

seq1  ATTAATATCTATTGTCATTTTTTTGTTACACATGAACAATTGCAGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATCTATTGTCATTTTTTTGTTACACATGAACAATTGCAGAAATA  350

seq1  ATGGCACCAAAATGGGTGACTTTAGAAAATGCCAAAAGAACATTGCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACCAAAATGGGTGACTTTAGAAAATGCCAAAAGAACATTGCATAC  400

seq1  TTTTATCTACAAAACATCATCATGCTACCTTGTTCTGGAGGATATGACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTACAAAACATCATCATGCTACCTTGTTCTGGAGGATATGACCT  450

seq1  CATTAAGGATCTATATACCTCTCCTCTTTCTACTTACCTGTAGATTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGGATCTATATACCTCTCCTCTTTCTACTTACCTGTAGATTTATT  500

seq1  TCAACCAGAAATATATGTTGAATCTTATCATATCCTATTTGAGGGTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAGAAATATATGTTGAATCTTATCATATCCTATTTGAGGGTGAAA  550

seq1  AACATAAGTTTTACTTTATTGAACTGACAACACTAACATGACTATACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGTTTTACTTTATTGAACTGACAACACTAACATGACTATACTTT  600

seq1  TTGTGATTTGAAAATCATACACAGCAAAGGAAACATCTACAGGAAGTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTTGAAAATCATACACAGCAAAGGAAACATCTACAGGAAGTTGG  650

seq1  AATATTGTGTCATAGTGATAATTCAATAATTGGTGGC-TTTGTATCTTCT  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATATTGTGTCATAGTGATAATTCAATAATTGGTGGCTTTTGTATCTTCT  700

seq1  TTATAAAGAGGCTTGAAATCTTTTTAAAATACGACTTTTAAAGACTTGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGAGGCTTGAAATCTTTTTAAAATACGACTTTTAAAGACTTGCC  750

seq1  TGTTGGGATATTTTGGCCACACCTTTGAAGACTGGTGTTGTTTATGATCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGATATTTTGGCCACACCTTTGAAGACTGGTGTTGTTTATGATCA  800

seq1  AGAAGTATGTACTATGTGTTGACATTTTC-TTATTGACTTAAAACCC-TT  847
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  AGAAGTATGTACTATGTGTTGACATTTTCTTTATTGACTTAAAACCCTTT  850

seq1  TGCCCCCAAAATAGTTTTTCTCTCTTCATTGCATTTTCTCAA-TTAGTGT  896
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  TGCCCCCAAAATAGTTTTTCTCTCTTCATTGCATTTTCTCAATTTAGTG-  899

seq1  TTACTTTTTCTGATGTTTCTGTTATTGAACTATTGTTCATTTGCATTTTC  946
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  TTACTTTTTCTGATG-TTCTGTTA-TGAACTATTGTTCATTTGCATTTTC  947

seq1  ACGTTTTTATGCCATTGCTAAAGAGTTATAATTTCTAGAGAATGCAAAGT  996
      ||||||||||||||||||||||||||||||  |||||||| |||| ||||
seq2  ACGTTTTTATGCCATTGCTAAAGAGTTATA--TTCTAGAG-ATGC-AAGT  993

seq1  GACACCTTGAAGCAGTAATTAAATTTTTATTTTTATTTTAATCATTTATT  1046
      |||||||||||||||||| |||||||||  ||||||||||||||||||||
seq2  GACACCTTGAAGCAGTAA-TAAATTTTTTATTTTATTTTAATCATTTATT  1042

seq1  TGAGGGAATTAATTTTAAAATTTATTTATATTTATGCTTCTCTCTGGCTA  1096
      |||||| ||||  ||||||  |||||| |||||||   ||||||  ||  
seq2  TGAGGG-ATTA--TTTAAA--TTATTT-TATTTATTGCTCTCTCCTGCCT  1086

seq1  TATGACTTGCTTGCTGGTGTCCTCAGAGGCCAGAAGTAGTTGTCAAG  1143
      |||||||||||||||||||| |||  ||||||||| ||| |||||||
seq2  TATGACTTGCTTGCTGGTGT-CTCCAAGGCCAGAA-TAG-TGTCAAG  1130