BAC Information

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BAC

Clone NameB6Ng01-086J06
Chromosome18 (Build37)
Map Location 83,512,333 - 83,513,478
singlet/doubletsinglet
Overlap genenone
Upstream geneB020010K11Rik, Galr1, Mbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik
Downstream geneLOC665284, Tshz1, Zadh2, LOC669856, Zfp407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086J06.bB6Ng01-086J06.g
ACCDH899935DH899936
length1,118394
definitionDH899935|Mus musculus domesticus DNA, BAC clone: B6Ng01-086J06, 5' end.DH899936|Mus musculus domesticus DNA, BAC clone: B6Ng01-086J06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ggcttaagaacagaaggtgggattataaaggtttgtttgtttgttttcag
aaggaaacctaggacactattttcaggacaggcccataatccattagact
ggttgccctgggagagagtttagagagagaaggggacaggacctgggtgg
acactcagaaaaggctgcagacagaagatggtagaaaagacttttaggga
aagagtcagtgggtttaaatggtactaaagccaaaccagcagccatggtg
agattgtggagaccaacactgcagcaactgccttcaagctaatcattttg
ctagtgtgaaaagtaggacaagggctggagagatggctcaagaggtagag
gtgttgcccctgaaactgatgtgctgagttcaagtccttggtccacaagg
tagcagaagggtgtgcctgcacacatacacacatacacacatacacacac
acagactcacatacatacaaatacacacactcacctacatatacattcac
acacttatacacatatacacacaaacatacacacatagaaatggaatcaa
gacagtattctgatcaagactcaacgttaatgtcggcaaacacgctttat
aaagaagaggggaggcccattcccagtcacacaaagttcctttgaagttg
tcagatcagccttttagtaggaactctcgaaaatcacatatgcatacaca
tttacacacacatatacacacatatacacaaacacacacagacacacact
catctacatatatacaaaaaatgcacatacatatatacacacacacattc
atacacatacacacacacacacatgctttaaaaaagaaatagtttgaata
gtaactcacttgctagcctgcttattcttcacattctcccagaggctctg
tgagcagcctgcccagcttcacacagttagaagtttgacccagagctctt
gcactgtgggtgctacagcatggaagtgaaggcagcttctggggtatcca
cactgttttcatccttttcttggctgcaaatgcatgcacatcatgatgtg
ctgagactctgctgtttctcttttctgcagatgtttcatgacttcagcta
cagagctgtgttcctcac
cagggaatcacaaggacacacttgataacctgtaatctaccaaatttgga
aatctgctgaagatgccatgctcttggggcacaggactcagaggacacga
gccaggtctgacctgccatctcctccctcaggactagttctcatggaaac
agaagatgccatttgagcaatcaatggagaaaagcaaccgatagttctgt
gaacgacagctatagtgcctataaactacaacaaagaccaggagagcatg
agaaccctaagggtataaaagtggcaggcactctttgataatgaccaaca
gcctcacctaaagcctgcttgacaagagggaagttgtccctggtgctgga
aacgtagctgacacatggggagaaggaggaggggaagggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_83512333_83513478
seq2: B6Ng01-086J06.b_53_1170

seq1  GGCTTAAGAACAGAAGGTGGGATTATAAAGGTTTGTTTGTTTGTTTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAGAACAGAAGGTGGGATTATAAAGGTTTGTTTGTTTGTTTTCAG  50

seq1  AAGGAAACCTAGGACACTATTTTCAGGACAGGCCCATAATCCATTAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACCTAGGACACTATTTTCAGGACAGGCCCATAATCCATTAGACT  100

seq1  GGTTGCCCTGGGAGAGAGTTTAGAGAGAGAAGGGGACAGGACCTGGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCCTGGGAGAGAGTTTAGAGAGAGAAGGGGACAGGACCTGGGTGG  150

seq1  ACACTCAGAAAAGGCTGCAGACAGAAGATGGTAGAAAAGACTTTTAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGAAAAGGCTGCAGACAGAAGATGGTAGAAAAGACTTTTAGGGA  200

seq1  AAGAGTCAGTGGGTTTAAATGGTACTAAAGCCAAACCAGCAGCCATGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCAGTGGGTTTAAATGGTACTAAAGCCAAACCAGCAGCCATGGTG  250

seq1  AGATTGTGGAGACCAACACTGCAGCAACTGCCTTCAAGCTAATCATTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTGGAGACCAACACTGCAGCAACTGCCTTCAAGCTAATCATTTTG  300

seq1  CTAGTGTGAAAAGTAGGACAAGGGCTGGAGAGATGGCTCAAGAGGTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTGAAAAGTAGGACAAGGGCTGGAGAGATGGCTCAAGAGGTAGAG  350

seq1  GTGTTGCCCCTGAAACTGATGTGCTGAGTTCAAGTCCTTGGTCCACAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCCCCTGAAACTGATGTGCTGAGTTCAAGTCCTTGGTCCACAAGG  400

seq1  TAGCAGAAGGGTGTGCCTGCACACATACACACATACACACATACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAAGGGTGTGCCTGCACACATACACACATACACACATACACACAC  450

seq1  ACAGACTCACATACATACAAATACACACACTCACCTACATATACATTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTCACATACATACAAATACACACACTCACCTACATATACATTCAC  500

seq1  ACACTTATACACATATACACACAAACATACACACATAGAAATGGAATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATACACATATACACACAAACATACACACATAGAAATGGAATCAA  550

seq1  GACAGTATTCTGATCAAGACTCAACGTTAATGTCGGCAAACACGCTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTATTCTGATCAAGACTCAACGTTAATGTCGGCAAACACGCTTTAT  600

seq1  AAAGAAGAGGGGAGGCCCATTCCCAGTCACACAAAGTTCCTTTGAAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAGGGGAGGCCCATTCCCAGTCACACAAAGTTCCTTTGAAGTTG  650

seq1  TCAGATCAGCCTTTTAGTAGGAACTCTCGAAAATCACATATGCATACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCAGCCTTTTAGTAGGAACTCTCGAAAATCACATATGCATACACA  700

seq1  TTTACACACACATATACACACATATACACAAACACACACAGACACACACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACACACATATACACACATATACACAAACACACACAGACACACACT  750

seq1  CATCTACATATATACAAAAAATGCACATACATATATACACACACACATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACATATATACAAAAAATGCACATACATATATACACACACACATTC  800

seq1  ATACACATACACACACACACACATGCTTTAAAAAAGAAATAGTTTGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATACACACACACACACATGCTTTAAAAAAGAAATAGTTTGAATA  850

seq1  GTAACTCACTTGCTAGCCTGCTTATTCTTCACATTCTCCCAGAGGCTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCACTTGCTAGCCTGCTTATTCTTCACATTCTCCCAGAGGCTCTG  900

seq1  TGAGCAGCCTGCCCAGCTTCACACAGTTAGAAGTTTGACCCAGAGCTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCCTGCCCAGCTTCACACAGTTAGAAGTTTGACCCAGAGCTCTT  950

seq1  GCACTGTGGGTGCTACAGCATGGAAGGTGAAGGCAGCCTTCTGGGGTATC  1000
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  GCACTGTGGGTGCTACAGCATGGAA-GTGAAGGCAG-CTTCTGGGGTATC  998

seq1  CACACTGGTTTTTCAATCCCTTTTCTTGGCTGCCAAATGCAGTGCACATC  1050
      |||||||  ||||||   |||||||||||||| |||||||| ||||||||
seq2  CACACTG--TTTTCA--TCCTTTTCTTGGCTG-CAAATGCA-TGCACATC  1042

seq1  ATGAATGGTGGCCTTGAGACTCTGCTGTTTTCTTCTTTTTCCTGCAGGAA  1100
      ||||   |||    ||||||||||||||    |||| ||| ||||||  |
seq2  ATGA--TGTG---CTGAGACTCTGCTGT----TTCTCTTTTCTGCAG--A  1081

seq1  TGTTTTCATGACCCTTTCCAGGCCTTACAGGAGCTGTGTTCCTCAC  1146
      || |||||||||    | |||    |||| ||||||||||||||||
seq2  TG-TTTCATGAC----TTCAG---CTACA-GAGCTGTGTTCCTCAC  1118