BAC Information

Click to search

BAC

Clone NameB6Ng01-091D11
Chromosome18 (Build37)
Map Location 24,119,105 - 24,280,683
singlet/doubletdoublet
Overlap geneZfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik
Upstream geneNol4, LOC100040579, LOC665797, Dtna, Mapre2, EG665813, LOC100040623
Downstream geneGalnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos, Fhod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091D11.bB6Ng01-091D11.g
ACCDH903303DH903304
length6541,130
definitionDH903303|Mus musculus domesticus DNA, BAC clone: B6Ng01-091D11, 5' end.DH903304|Mus musculus domesticus DNA, BAC clone: B6Ng01-091D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,280,030 - 24,280,683)(24,119,105 - 24,120,245)
sequence
gaattcaaagataactcgggcaactgagtttgaggtcagacctgtctaca
tagcgaagctgcaggtcatccagagaccctgtctaaaaaacaagaaaaag
aatgaagttactaagagaccggatgctcactgggaccctccaggcgcgtg
ccccaggtcaaggttcacaacgccagcagcagtcaccaggcgggcgcctt
ccgacccggaaggaacacttccgagccccgcctcctaagagccgcccggg
aggactcggttaagctccaagaggcttgcggagtttccgagcatcaacac
ggaagtaacatcgagccggaagttctcgggctcgccttggaaggggtggg
ggcagggatctgcaggctgactgcgggcagaatggcggctcaaattccca
tcgtggctgccacttctacccccgccgtagctaggaacagcaagaagagg
ccagctagcccttctcacaacagcagcggagggggatatggtgctagtaa
gaagaaaaagctatccgcctccggctttgctcaggtactgtccgcaccgt
ccgggaacaagagcgcatgcgcaggcccgagaggcgccgagaacgcttgc
gcggggaggggccgaagctgaggcgcatgtgcagtgcttgtatggggggg
gggg
gaattcacactggtgagaaaccctatgggtgtagtgaatgtgggaaaacc
tttagccagagctcaaagcttattagacatcagcgaattcatacaggaga
gagaccatatgaatgtaatgagtgtggaaaagctttcaagcagagctcag
agctgattacccatcagaggatacacagtggagagaaaccttatgaatgt
aatgagtgtggaaaagccttcagtctgaattcaaacctcataagacatca
aagaatccacagtggagaggagccttatcagtgtaatgactgtggcaaaa
ccttcaaaaggagctcagcccttgttcagcaccagagaatccactctggg
gatgaagcgtatatatgtaatgaatgtgggaaggcttttaggcacaggtc
agtgttaatgcgccatcagagagtccacactattaagtaacttaatacaa
tgattcataaatacatccatatatttttatctttatcagtcaaaaggttg
actttggagcaagattccgaggcaatttttttttttaaaaaaagtagtct
ttagtcaatctaacttgctttgtgcggcacttccccaatgttaatgaaat
tttctttgaaacttcctgtgacttaaccagaaagaaatataagaccatta
ctttgagctttgctcttaacattaggaatactcaggaaaaaaagaagtaa
tgcaatattgcgaccttattatctatgagaatgtcatgtgaaaaggcttc
attctgtcactacatctgactgtcaatgtaccaggtttgtgagacagtat
ggttggcgttaagagactgcttaaggaactcaaaaacttttactcaacag
tcaatagacaatgagaaaacattttcattgatgatttgttgatctaaaga
caagcccagaggcaggcagatttctgagttcgaggccagcctggtctaca
aagtgagttccaggacagccagggctatacagagaaaccctgtctcaaaa
caacaagataaaagaaatgaaatgacttgaaagtaaaagaatacaagtta
tttataaaggtgaagagtccatctgttcccactgccatgctgggaactaa
tttaggcttccatgctagccagtagtagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_24280030_24280683
seq2: B6Ng01-091D11.b_44_697 (reverse)

seq1  CCCCCCCCCCCATACAAGCACTGCACATGCGCCTCAGCTTCGGCCCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCATACAAGCACTGCACATGCGCCTCAGCTTCGGCCCCTCC  50

seq1  CCGCGCAAGCGTTCTCGGCGCCTCTCGGGCCTGCGCATGCGCTCTTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGCAAGCGTTCTCGGCGCCTCTCGGGCCTGCGCATGCGCTCTTGTTC  100

seq1  CCGGACGGTGCGGACAGTACCTGAGCAAAGCCGGAGGCGGATAGCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGACGGTGCGGACAGTACCTGAGCAAAGCCGGAGGCGGATAGCTTTTT  150

seq1  CTTCTTACTAGCACCATATCCCCCTCCGCTGCTGTTGTGAGAAGGGCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTACTAGCACCATATCCCCCTCCGCTGCTGTTGTGAGAAGGGCTAG  200

seq1  CTGGCCTCTTCTTGCTGTTCCTAGCTACGGCGGGGGTAGAAGTGGCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTTCTTGCTGTTCCTAGCTACGGCGGGGGTAGAAGTGGCAGCC  250

seq1  ACGATGGGAATTTGAGCCGCCATTCTGCCCGCAGTCAGCCTGCAGATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGGGAATTTGAGCCGCCATTCTGCCCGCAGTCAGCCTGCAGATCCC  300

seq1  TGCCCCCACCCCTTCCAAGGCGAGCCCGAGAACTTCCGGCTCGATGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCACCCCTTCCAAGGCGAGCCCGAGAACTTCCGGCTCGATGTTAC  350

seq1  TTCCGTGTTGATGCTCGGAAACTCCGCAAGCCTCTTGGAGCTTAACCGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTGTTGATGCTCGGAAACTCCGCAAGCCTCTTGGAGCTTAACCGAG  400

seq1  TCCTCCCGGGCGGCTCTTAGGAGGCGGGGCTCGGAAGTGTTCCTTCCGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCGGGCGGCTCTTAGGAGGCGGGGCTCGGAAGTGTTCCTTCCGGG  450

seq1  TCGGAAGGCGCCCGCCTGGTGACTGCTGCTGGCGTTGTGAACCTTGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGGCGCCCGCCTGGTGACTGCTGCTGGCGTTGTGAACCTTGACCT  500

seq1  GGGGCACGCGCCTGGAGGGTCCCAGTGAGCATCCGGTCTCTTAGTAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACGCGCCTGGAGGGTCCCAGTGAGCATCCGGTCTCTTAGTAACTT  550

seq1  CATTCTTTTTCTTGTTTTTTAGACAGGGTCTCTGGATGACCTGCAGCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTTTCTTGTTTTTTAGACAGGGTCTCTGGATGACCTGCAGCTTC  600

seq1  GCTATGTAGACAGGTCTGACCTCAAACTCAGTTGCCCGAGTTATCTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTAGACAGGTCTGACCTCAAACTCAGTTGCCCGAGTTATCTTTGA  650

seq1  ATTC  654
      ||||
seq2  ATTC  654

seq1: chr18_24119105_24120245
seq2: B6Ng01-091D11.g_67_1196

seq1  GAATTCACACTGGTGAGAAACCCTATGGGTGTAGTGAATGTGGGAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGGTGAGAAACCCTATGGGTGTAGTGAATGTGGGAAAACC  50

seq1  TTTAGCCAGAGCTCAAAGCTTATTAGACATCAGCGAATTCATACAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCAGAGCTCAAAGCTTATTAGACATCAGCGAATTCATACAGGAGA  100

seq1  GAGACCATATGAATGTAATGAGTGTGGAAAAGCTTTCAAGCAGAGCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCATATGAATGTAATGAGTGTGGAAAAGCTTTCAAGCAGAGCTCAG  150

seq1  AGCTGATTACCCATCAGAGGATACACAGTGGAGAGAAACCTTATGAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTACCCATCAGAGGATACACAGTGGAGAGAAACCTTATGAATGT  200

seq1  AATGAGTGTGGAAAAGCCTTCAGTCTGAATTCAAACCTCATAAGACATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTGTGGAAAAGCCTTCAGTCTGAATTCAAACCTCATAAGACATCA  250

seq1  AAGAATCCACAGTGGAGAGGAGCCTTATCAGTGTAATGACTGTGGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCACAGTGGAGAGGAGCCTTATCAGTGTAATGACTGTGGCAAAA  300

seq1  CCTTCAAAAGGAGCTCAGCCCTTGTTCAGCACCAGAGAATCCACTCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAAAGGAGCTCAGCCCTTGTTCAGCACCAGAGAATCCACTCTGGG  350

seq1  GATGAAGCGTATATATGTAATGAATGTGGGAAGGCTTTTAGGCACAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGCGTATATATGTAATGAATGTGGGAAGGCTTTTAGGCACAGGTC  400

seq1  AGTGTTAATGCGCCATCAGAGAGTCCACACTATTAAGTAACTTAATACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAATGCGCCATCAGAGAGTCCACACTATTAAGTAACTTAATACAA  450

seq1  TGATTCATAAATACATCCATATATTTTTATCTTTATCAGTCAAAAGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATAAATACATCCATATATTTTTATCTTTATCAGTCAAAAGGTTG  500

seq1  ACTTTGGAGCAAGATTCCGAGGCAATTTTTTTTTTTAAAAAAAGTAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAGCAAGATTCCGAGGCAATTTTTTTTTTTAAAAAAAGTAGTCT  550

seq1  TTAGTCAATCTAACTTGCTTTGTGCGGCACTTCCCCAATGTTAATGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAATCTAACTTGCTTTGTGCGGCACTTCCCCAATGTTAATGAAAT  600

seq1  TTTCTTTGAAACTTCCTGTGACTTAACCAGAAAGAAATATAAGACCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAAACTTCCTGTGACTTAACCAGAAAGAAATATAAGACCATTA  650

seq1  CTTTGAGCTTTGCTCTTAACATTAGGAATACTCAGGAAAAAAAGAAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGCTTTGCTCTTAACATTAGGAATACTCAGGAAAAAAAGAAGTAA  700

seq1  TGCAATATTGCGACCTTATTATCTATGAGAATGTCATGTGAAAAGGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATTGCGACCTTATTATCTATGAGAATGTCATGTGAAAAGGCTTC  750

seq1  ATTCTGTCACTACATCTGACTGTCAATGTACCAGGTTTGTGAGACAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCACTACATCTGACTGTCAATGTACCAGGTTTGTGAGACAGTAT  800

seq1  GGTTGGCGTTAAGAGACTGCTTAAGGAACTCAAAAACTTTTACTCAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCGTTAAGAGACTGCTTAAGGAACTCAAAAACTTTTACTCAACAG  850

seq1  TCAATAGACAATGAGAAAACATTTTCATTGATGATTTGTTGATCTAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGACAATGAGAAAACATTTTCATTGATGATTTGTTGATCTAAAGA  900

seq1  CAAGCCCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  950

seq1  AAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  AAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTC--AA  998

seq1  AACAAACAAAGATAAAAAAGAAATGAAATGAACTTGAAAAGTAAAAG-AT  1049
      |||||   |||||  ||||||||||||||| ||||| |||||||||| ||
seq2  AACAA--CAAGAT--AAAAGAAATGAAATG-ACTTG-AAAGTAAAAGAAT  1042

seq1  ACAAGTTAATTTATAAA-GTGAAGAGTCCCATCTGTCCCCACTGCCATGC  1098
      ||||||| ||||||||| ||||||||| |||||||| |||||||||||||
seq2  ACAAGTT-ATTTATAAAGGTGAAGAGT-CCATCTGTTCCCACTGCCATGC  1090

seq1  TGGGAACTAATTTAGGGCTTCACATGCTAGCAAGTAGTTAGTC  1141
      |||||||||||||| |||||| ||||||||| ||||| |||||
seq2  TGGGAACTAATTTA-GGCTTC-CATGCTAGCCAGTAG-TAGTC  1130