BAC Information

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BAC

Clone NameB6Ng01-092L23
Chromosome18 (Build37)
Map Location 41,880,782 - 42,010,043
singlet/doubletdoublet
Overlap geneLOC100041988, LOC100041997
Upstream geneEG225416, LOC677182
Downstream genePrelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092L23.bB6Ng01-092L23.g
ACCDH904421DH904422
length1,010932
definitionDH904421|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L23, 5' end.DH904422|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,009,027 - 42,010,043)(41,880,782 - 41,881,711)
sequence
gaattcttaggtctcacatatgccgctgccgctgccgctgccgctgacag
cagtgaagtggcaatcttggctccctcacaggtaaggaacttgattctgt
gttccttacataagctctgtcatccttaggatggttactggcatcagtga
gggtcatactgtgccctagcatctctaacaagcccagcttgggcacccat
ccttcatcagccaatttaaagaaccaaattaacaggggaaaaaaaaaaag
caaagaaaggaggtctattcaatgtggccagattaggataagggacaaga
gttccaatgacacccccagcactgtccactatcaagtctatcttctaggc
tttagggtgaaatttagttttgaatagaagcaagagctatgcgtgattag
gcattggcccgtcattttctgtctcattcttttgtaaggatgtctgacaa
gttgcaaatttcttttctccagaaagtgttcccctctcccctctcacaga
tccaggttttaggtgtcttccttccaccagaatgggattcctgggggggg
aattctaatgttttggggttcatcatttcaatagtctgctagtgaaagag
aggtacagatgtaagtttttagtatatcctccttcctgccaaggcaagct
gtttacagtaagggccattcaaatccaagactccccaaatttagacatgc
cttatgtcatgaatcctcacaaaacatacagtggccaataccacctgaga
tttgcatgttgagggtacacttgtcgtgagcatcaatcattaaagtttgc
ctactctcaagggtggtggtggcccatgcctttaatcccagcactcagag
gcagaggcaggtagagctctgtgagtttgaggccagcatgacctgcagat
tgatttctaggagagccaaggcacacagaaaaaccctgtctcaaaaagtc
acaaacaaacaaacaaacacatcttatctgtttttacctttgggaatggt
gtagaattac
gaattcataccagtgttaaacttatgaatttaaagaaatgcttataattg
gcctatagtacttcaagagttgtgaaaggcatcatatgatatgggatcat
ctcaaagtaattgaatatagtcgttagagtggtggtctgactgaaaatgg
cccccacagactctcacagtgagtggcatttttggaggtgtgttcttgtt
ggagtagtggtggccttgttggaggagtgtgtcactgaggagtaggcttt
gaggtttcagaagctcaaaccaggcctatttgctcactgtcctttcctgt
cgtctgtagatcttgagctctcagttacccagcattgtgtctgcctgatt
gccaccatgcttccctctatgacaataatggattatagaccatccccagt
tagctgttttcctttataatagttgccatgatcatggtctcttttcacag
gagtaaaatcctaaataagatatttagtggatggggtagataacaatcaa
gactggctatgggattctaatttttgaaacttgaaaatgtatatacatca
aggctcactgaaatattctcttcagttttctatgcattgaaatttttcat
aacaaaagttgaatctgtaacttaagaataatttgcagaaaatatgcatc
agttcacaatggtacaaagcctgagtacacctgtttcccatgctgataat
ggcaataagggtttttctttatccgcctccactaataagtattctgagtt
ttcctttgagtctcggcatatctatcccatgattcatgaataatgaataa
cattaacataattttagtgattataaaatatagctcatattttcttattt
ttctggttcttttctgactttcatcccaatttactttgaagaattgtgat
cacttcaaaagctattatttagtggaaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42009027_42010043
seq2: B6Ng01-092L23.b_45_1054 (reverse)

seq1  GTAATTCTACCACATACCCAAAAGGTAAAAAACAGATAAGATTGTTGTTT  50
      ||||||||||  ||| ||| |||||| |||||||||||||||   |||||
seq2  GTAATTCTACACCATTCCC-AAAGGT-AAAAACAGATAAGAT--GTGTTT  46

seq1  GTTTGTTTGTTTGTTGACTTTTTGAGACAGGGTTTTTCTGTGTGGCCTTG  100
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  GTTTGTTTGTTTG-TGACTTTTTGAGACAGGGTTTTTCTGTGT-GCCTTG  94

seq1  GCTCTCCTAGAAATCAATCTGCAGGTCATGCTGGCCTCAAACTCACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTAGAAATCAATCTGCAGGTCATGCTGGCCTCAAACTCACAGAG  144

seq1  CTCTACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCATGGGCCACC  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTCTACCTGCCTCTGCCT-CTGAGTGCTGGGATTAAAGGCATGGGCCACC  193

seq1  ACCACCCTTGAGAGTAGGCAAACTTTAATGATTGATGCTCACGACAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCTTGAGAGTAGGCAAACTTTAATGATTGATGCTCACGACAAGTG  243

seq1  TACCCTCAACATGCAAATCTCAGGTGGTATTGGCCACTGTATGTTTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCAACATGCAAATCTCAGGTGGTATTGGCCACTGTATGTTTTGTG  293

seq1  AGGATTCATGACATAAGGCATGTCTAAATTTGGGGAGTCTTGGATTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCATGACATAAGGCATGTCTAAATTTGGGGAGTCTTGGATTTGAA  343

seq1  TGGCCCTTACTGTAAACAGCTTGCCTTGGCAGGAAGGAGGATATACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTTACTGTAAACAGCTTGCCTTGGCAGGAAGGAGGATATACTAAA  393

seq1  AACTTACATCTGTACCTCTCTTTCACTAGCAGACTATTGAAATGATGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACATCTGTACCTCTCTTTCACTAGCAGACTATTGAAATGATGAAC  443

seq1  CCCAAAACATTAGAATTCCCCCCCCAGGAATCCCATTCTGGTGGAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAACATTAGAATTCCCCCCCCAGGAATCCCATTCTGGTGGAAGGAA  493

seq1  GACACCTAAAACCTGGATCTGTGAGAGGGGAGAGGGGAACACTTTCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTAAAACCTGGATCTGTGAGAGGGGAGAGGGGAACACTTTCTGGA  543

seq1  GAAAAGAAATTTGCAACTTGTCAGACATCCTTACAAAAGAATGAGACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAATTTGCAACTTGTCAGACATCCTTACAAAAGAATGAGACAGA  593

seq1  AAATGACGGGCCAATGCCTAATCACGCATAGCTCTTGCTTCTATTCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACGGGCCAATGCCTAATCACGCATAGCTCTTGCTTCTATTCAAAA  643

seq1  CTAAATTTCACCCTAAAGCCTAGAAGATAGACTTGATAGTGGACAGTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTCACCCTAAAGCCTAGAAGATAGACTTGATAGTGGACAGTGCT  693

seq1  GGGGGTGTCATTGGAACTCTTGTCCCTTATCCTAATCTGGCCACATTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGTCATTGGAACTCTTGTCCCTTATCCTAATCTGGCCACATTGAA  743

seq1  TAGACCTCCTTTCTTTGCTTTTTTTTTTTCCCCTGTTAATTTGGTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTCCTTTCTTTGCTTTTTTTTTTTCCCCTGTTAATTTGGTTCTTT  793

seq1  AAATTGGCTGATGAAGGATGGGTGCCCAAGCTGGGCTTGTTAGAGATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGCTGATGAAGGATGGGTGCCCAAGCTGGGCTTGTTAGAGATGCT  843

seq1  AGGGCACAGTATGACCCTCACTGATGCCAGTAACCATCCTAAGGATGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAGTATGACCCTCACTGATGCCAGTAACCATCCTAAGGATGACA  893

seq1  GAGCTTATGTAAGGAACACAGAATCAAGTTCCTTACCTGTGAGGGAGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTATGTAAGGAACACAGAATCAAGTTCCTTACCTGTGAGGGAGCCA  943

seq1  AGATTGCCACTTCACTGCTGTCAGCGGCAGCGGCAGCGGCAGCGGCATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCCACTTCACTGCTGTCAGCGGCAGCGGCAGCGGCAGCGGCATAT  993

seq1  GTGAGACCTAAGAATTC  1017
      |||||||||||||||||
seq2  GTGAGACCTAAGAATTC  1010

seq1: chr18_41880782_41881711
seq2: B6Ng01-092L23.g_70_1001

seq1  GAATTCATACCAGTGTTAAACTTATGAATTTAAAGAAATGCTTATAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACCAGTGTTAAACTTATGAATTTAAAGAAATGCTTATAATTG  50

seq1  GCCTATAGTACTTCAAGAGTTGTGAAAGGCATCATATGATATGGGATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAGTACTTCAAGAGTTGTGAAAGGCATCATATGATATGGGATCAT  100

seq1  CTCAAAGTAATTGAATATAGTCGTTAGAGTGGTGGTCTGACTGAAAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTAATTGAATATAGTCGTTAGAGTGGTGGTCTGACTGAAAATGG  150

seq1  CCCCCACAGACTCTCACAGTGAGTGGCATTTTTGGAGGTGTGTTCTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACAGACTCTCACAGTGAGTGGCATTTTTGGAGGTGTGTTCTTGTT  200

seq1  GGAGTAGTGGTGGCCTTGTTGGAGGAGTGTGTCACTGAGGAGTAGGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGTGGTGGCCTTGTTGGAGGAGTGTGTCACTGAGGAGTAGGCTTT  250

seq1  GAGGTTTCAGAAGCTCAAACCAGGCCTATTTGCTCACTGTCCTTTCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTCAGAAGCTCAAACCAGGCCTATTTGCTCACTGTCCTTTCCTGT  300

seq1  CGTCTGTAGATCTTGAGCTCTCAGTTACCCAGCATTGTGTCTGCCTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGTAGATCTTGAGCTCTCAGTTACCCAGCATTGTGTCTGCCTGATT  350

seq1  GCCACCATGCTTCCCTCTATGACAATAATGGATTATAGACCATCCCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATGCTTCCCTCTATGACAATAATGGATTATAGACCATCCCCAGT  400

seq1  TAGCTGTTTTCCTTTATAATAGTTGCCATGATCATGGTCTCTTTTCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTTTTCCTTTATAATAGTTGCCATGATCATGGTCTCTTTTCACAG  450

seq1  GAGTAAAATCCTAAATAAGATATTTAGTGGATGGGGTAGATAACAATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAATCCTAAATAAGATATTTAGTGGATGGGGTAGATAACAATCAA  500

seq1  GACTGGCTATGGGATTCTAATTTTTGAAACTTGAAAATGTATATACATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCTATGGGATTCTAATTTTTGAAACTTGAAAATGTATATACATCA  550

seq1  AGGCTCACTGAAATATTCTCTTCAGTTTTCTATGCATTGAAATTTTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCACTGAAATATTCTCTTCAGTTTTCTATGCATTGAAATTTTTCAT  600

seq1  AACAAAAGTTGAATCTGTAACTTAAGAATAATTTGCAGAAAATATGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGTTGAATCTGTAACTTAAGAATAATTTGCAGAAAATATGCATC  650

seq1  AGTTCACAATGGTACAAAGCCTGAGTACACCTGTTTCCCATGCTGATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACAATGGTACAAAGCCTGAGTACACCTGTTTCCCATGCTGATAAT  700

seq1  GGCAATAAGGGTTTTTCTTTATCCGCCTCCACTAATAAGTATTCTGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAAGGGTTTTTCTTTATCCGCCTCCACTAATAAGTATTCTGAGTT  750

seq1  TTCCTTTGAGTCTCGGCATATCTATCCCATGATTCATGAATAATGAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGAGTCTCGGCATATCTATCCCATGATTCATGAATAATGAATAA  800

seq1  CATTAACATAATTTTAGTGATTATAAAATATAGCTCATATTTTCTTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACATAATTTTAGTGATTATAAAATATAGCTCATATTTTCTTATTT  850

seq1  TTCT-GTTCTTTCTTGACTTTCATCCCAATTTACTTTGAAGAATTGTGAT  899
      |||| |||||||  ||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTCTTTTCTGACTTTCATCCCAATTTACTTTGAAGAATTGTGAT  900

seq1  CACTTCAAAAGCTA-TATTAAGAGGAAATATA  930
      |||||||||||||| |||| || |||||||||
seq2  CACTTCAAAAGCTATTATTTAGTGGAAATATA  932