BAC Information

Click to search

BAC

Clone NameB6Ng01-093A21
Chromosome18 (Build37)
Map Location 27,441,196 - 27,442,256
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665977
Downstream geneEG665646, EG271505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093A21.bB6Ng01-093A21.g
ACCDH904646DH904647
length1,2021,155
definitionDH904646|Mus musculus domesticus DNA, BAC clone: B6Ng01-093A21, 5' end.DH904647|Mus musculus domesticus DNA, BAC clone: B6Ng01-093A21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagagatctgcctgcctctgttaagcacagaggctaaactagctg
ggtggggcccaatctgaaatgaccatttttaccacacctggacctaacct
tgctctgttccaggctaattctaaactcaggaatttgtctgcatttgtaa
gcatagagggaaaacaaaaacaaaaacacaaaaccttaactgggtgggat
ctcctgctatcaccacgacataaatcttggtatctccttgcctattatct
ttctgacaggttggctcatattgtagttgcttttgttcctttaaattcat
gaagcccctcatatagttcatactgcatctttttttttttttggcatagt
tgagaaattacatgttttcaaacacatgtttttagagttactttccacag
tcttaagggatgtcctgaagatcccagcatttaccattttcctaagatac
tagccataccttaacttcctggactcagactgctgtttgattttaaagga
gtcatttcctttaacagggaggaatattcttggaggaacatgaaaatatg
tacattattatacacacaagctttatgcccacagcagctagtgacactta
tggagacccacgtctgccctccctagaggcaggaactgtgtcattctgtc
cccactaaggacattctatacccgggcacactcggcctgaaagagcctgc
tactggtggtgcttgattcaagattgtctattcataaaaactctggcaca
tttactaattatagagttttacatttatgttacacaattcccaagtgcct
ggtacaaaagcaatactggccatgcctttccggaagtatttgatttttgt
tttttgtttttaggatttttttcgagacagggcttctctgtgtagtcctg
gctctcctggaactcactctgtagaccaggctggcctggaactcagaaat
ctgcctgctctgcctcccaaatgctgggattaaaggcatgagccaccact
gcccagctgtattgaaacagctttgaagacttctatatcagcactttact
ctataaagacagaaacaaatccgagctattcactctattttattaaatta
gcttggataaatacaggataaagggttaggctcgaagatagctcatgttg
aatacaaatgctgatcagttacctggcatacctgggttcggaagggtggc
at
gaattctcacctgaggaataccggaatggcagagaagcacctgaaaaaat
gttcaacaaccttaatcatcagagaaatgcaaatcaaaacaaccctgaga
ttccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
ggaattgcaagcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactaccggaggatcccgcaatacctctcctggg
catatatccagttgttccaactggtaagaaggacacatgctccactatgt
tcatagcagccttatttataatagccagaagctggaaagaacccagatgc
ccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatgga
gtactactcagctattaaaagaatgaatttatgaaattcctaggcaaatg
gttgaacctggagggcatcatcctgagtgagggaacacaatcacaaaaga
actcaaatgatatgtactcactcataagtggatattagtccagaaactta
gtatagctagatataaggtacaatttcaaaacacatgaaaccgaagaaga
accaagaccaaagtgtggacactttgccccttcttagaattggaaacaat
cacccatggaaggaattacagagacaaagtttggagctgagacaaaagga
tggaccatctagagactgccatatccagggatccatcccataattagcct
ccaaatgatgacaccattgcatacactagcaagcatttgttgcaaggact
gtgatatagctgtctcttgtgagactaggcaggggcctagcaaacacaga
agtggatgctcacagtcaactattgggatggatcacagggccccaatgga
ggagctagaagaaagtattccaaggagctaaagagatctgcaaccctgta
ggttgcacattatgaactaacagtaccccggaggctcttgactttagctg
catattgtttccaaaagatggcctagtcgccatcactggaagagaggcca
ttggacaggcaactttaatatgtcccattcaggggattgcccgggcccag
aaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27441196_27442256
seq2: B6Ng01-093A21.b_211_1233

seq1  AAAACCTTAACTGGGTGGGATCTCCTGCTATCACCACGACATAAATCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTAACTGGGTGGGATCTCCTGCTATCACCACGACATAAATCTTG  50

seq1  GTATCTCCTTGCCTATTATCTTTCTGACAGGTTGGCTCATATTGTAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCCTTGCCTATTATCTTTCTGACAGGTTGGCTCATATTGTAGTTG  100

seq1  CTTTTGTTCCTTTAAATTCATGAAGCCCCTCATATAGTTCATACTGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTCCTTTAAATTCATGAAGCCCCTCATATAGTTCATACTGCATC  150

seq1  TTTTTTTTTTTTTGGCATAGTTGAGAAATTACATGTTTTCAAACACATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGGCATAGTTGAGAAATTACATGTTTTCAAACACATGT  200

seq1  TTTTAGAGTTACTTTCCACAGTCTTAAGGGATGTCCTGAAGATCCCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGTTACTTTCCACAGTCTTAAGGGATGTCCTGAAGATCCCAGCA  250

seq1  TTTACCATTTTCCTAAGATACTAGCCATACCTTAACTTCCTGGACTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCATTTTCCTAAGATACTAGCCATACCTTAACTTCCTGGACTCAGA  300

seq1  CTGCTGTTTGATTTTAAAGGAGTCATTTCCTTTAACAGGGAGGAATATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTTTGATTTTAAAGGAGTCATTTCCTTTAACAGGGAGGAATATTC  350

seq1  TTGGAGGAACATGAAAATATGTACATTATTATACACACAAGCTTTATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAACATGAAAATATGTACATTATTATACACACAAGCTTTATGCC  400

seq1  CACAGCAGCTAGTGACACTTATGGAGACCCACGTCTGCCCTCCCTAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGCTAGTGACACTTATGGAGACCCACGTCTGCCCTCCCTAGAGG  450

seq1  CAGGAACTGTGTCATTCTGTCCCCACTAAGGACATTCTATACCCGGGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTGTGTCATTCTGTCCCCACTAAGGACATTCTATACCCGGGCAC  500

seq1  ACTCGGCCTGAAAGAGCCTGCTACTGGTGGTGCTTGATTCAAGATTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGCCTGAAAGAGCCTGCTACTGGTGGTGCTTGATTCAAGATTGTCT  550

seq1  ATTCATAAAAACTCTGGCACATTTACTAATTATAGAGTTTTACATTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAAAAACTCTGGCACATTTACTAATTATAGAGTTTTACATTTATG  600

seq1  TTACACAATTCCCAAGTGCCTGGTACAAAAGCAATACTGGCCATGCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAATTCCCAAGTGCCTGGTACAAAAGCAATACTGGCCATGCCTTT  650

seq1  CCGGAAGTATTTGATTTTTGTTTTTTGTTTTTAGGATTTTTTTCGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGTATTTGATTTTTGTTTTTTGTTTTTAGGATTTTTTTCGAGACA  700

seq1  GGGCTTCTCTGTGTAGTCCTGGCTCTCCTGGAACTCACTCTGTAGACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCTCTGTGTAGTCCTGGCTCTCCTGGAACTCACTCTGTAGACCAG  750

seq1  GCTGGCCTGGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAATGCTGGG  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTGGCCTGGAACTCAGAAATCTGCCTG-CTCTGCCTCCCAAATGCTGGG  799

seq1  ATTAAAGGCATGAGCCACCACTGCCCAGCTGTATTTGAAACCAGCTTTGA  850
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  ATTAAAGGCATGAGCCACCACTGCCCAGCTGTA-TTGAAA-CAGCTTTGA  847

seq1  AGACTTCTATATTCAAGCACCTTTACTCTATAAAGACCAGAAACAAATTC  900
      ||||||||||||   |||| |||||||||||||||| |||||||||| ||
seq2  AGACTTCTATAT--CAGCA-CTTTACTCTATAAAGA-CAGAAACAAA-TC  892

seq1  AGAGCTATTCAACTCTATTTTATTACATAGGCTTGGATAAATACCAGGAT  950
       ||||||||| |||||||||||||| ||  ||||||||||||| ||||||
seq2  CGAGCTATTC-ACTCTATTTTATTAAATTAGCTTGGATAAATA-CAGGAT  940

seq1  TTAAAAAGGGGTTTAAAGCTCGAAAGATAGCTCAAAGGTTAGAATAACAA  1000
          ||||||   | | ||||| ||||||||||  | ||| |||||  ||
seq2  ----AAAGGG---TTAGGCTCG-AAGATAGCTC--ATGTT-GAATACAAA  979

seq1  TATAGCTGACTCAAGTTCACCTCCTGGCATACACATTGTGTGTCTCGGAA  1050
      |   ||||| || ||||     ||||||||||      || || ||||||
seq2  T---GCTGA-TC-AGTT----ACCTGGCATAC-----CTGGGT-TCGGAA  1014

seq1  AGGTGTGGCAT  1061
        | |||||||
seq2  --GGGTGGCAT  1023