BAC Information

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BAC

Clone NameB6Ng01-093K11
Chromosome13 (Build37)18 (Build37)
Map Location 26,597,494 - 26,598,66362,062,739 - 62,062,806
singlet/doubletsingletsinglet
Overlap geneLOC100042180
Upstream geneLOC214973, LOC666221
Downstream geneLOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093K11.bB6Ng01-093K11.g
ACCDH905081DH905082
length1,010304
definitionDH905081|Mus musculus domesticus DNA, BAC clone: B6Ng01-093K11, 5' end.DH905082|Mus musculus domesticus DNA, BAC clone: B6Ng01-093K11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,597,494 - 26,598,663)(62,062,739 - 62,062,806)
sequence
gaattccagaataatggattccaaataattgttctttagaaatgacgaat
agctgtttaaacccactgataacaacatgctgctccttcctaaacaacag
gccctccacatttactgtgccatatatgccagaagttactttattaattt
ttattgaatatgaaaagaccaagaggatgacagaggttaaatgacccttt
cctgaaagccccaaacttattttctaaaatattatctgctgcttctgtgt
gtgactaagaggagcaatggtggcaacatacctgtgcagaagctgagccc
acagaatgtttcttattttttgtattaatttaggttagtgtgtgcagctg
aaaatgaatatgtccaagggggtcacaatgtccaacagtttccaaagcat
gaatgtgaagctgtttggtgttctctgctatgtgtcgccccataacctca
cagagattacagggacatcttccttttagcaaaataatctaagtcaaata
gatattgttcatctttcttatgtagcattggcccgggagggatggcttta
tttttatattacatcacttattagagtaaatggtttttctacactggtca
aaaatgatcttgtgttagtcatggccaacataagtgcagtaaaatttctc
tcatatgaagtagaataaaatttgttatttgactgctagcattttctata
agggcaagcaattttattttataatataattatatcatttggaatggttg
tgttcagttaaaataaacactcatttatgtgggggaagaacaaagtttta
agctaagttatgacatatgatacaaggtaaaaccaaatcaagtgttattc
actctattaataaggtgtcccttcagcacagttaattctatgtatttacc
tttcagagaagagatggaggaggagagagagaggagagagagagagagag
atgagagagagatagagagacagaggagaagagagagaaaggaggaggag
aggagaggag
actttagtattaactctctctctctctctctctctctctctctctctctc
tctctctctctgtgagtgtgtgtgtgtgaataaataatagaatgttttga
gtgtctgataatttattacacacaagtgtcacttatagatttcacaatgt
ctctcccactggatatattttttatacgggggcacttcactctcacacac
actttaactctatgtgtgtgcgtgtgttttagttcaaaagacaaagagag
agagatatataaaatatgggagtgttttagtgtttgaacaggttgtgtgt
gata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26597494_26598663
seq2: B6Ng01-093K11.b_41_1050

seq1  GAATTCCAGAATAATGGATTCCAAATAATTGTTCTTTAGAAATGACGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAATAATGGATTCCAAATAATTGTTCTTTAGAAATGACGAAT  50

seq1  AGCTGTTTAAACCCACTGATAACAACATGCTGCTCCTTCCTAAACAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTAAACCCACTGATAACAACATGCTGCTCCTTCCTAAACAACAG  100

seq1  GCCCTCCACATTTACTGTGCCATATATGCCAGAAGTTACTTTATTAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCACATTTACTGTGCCATATATGCCAGAAGTTACTTTATTAATTT  150

seq1  TTATTGAATATGAAAAGACCAAGAGGATGACAGAGGTTAAATGACCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAATATGAAAAGACCAAGAGGATGACAGAGGTTAAATGACCCTTT  200

seq1  CCTGAAAGCCCCAAACTTATTTTCTAAAATATTATCTGCTGCTTCTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGCCCCAAACTTATTTTCTAAAATATTATCTGCTGCTTCTGTGT  250

seq1  GTGACTAAGAGGAGCAATGGTGGCAACATACCTGTGCAGAAGCTGAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTAAGAGGAGCAATGGTGGCAACATACCTGTGCAGAAGCTGAGCCC  300

seq1  ACAGAATGTTTCTTATTTTTTGTATTAATTTAGGTTAGTGTGTGCAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGTTTCTTATTTTTTGTATTAATTTAGGTTAGTGTGTGCAGCTG  350

seq1  AAAATGAATATGTCCAAGGGGGTCACAATGTCCAACAGTTTCCAAAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAATATGTCCAAGGGGGTCACAATGTCCAACAGTTTCCAAAGCAT  400

seq1  GAATGTGAAGCTGTTTGGTGTTCTCTGCTATGTGTCGCCCCATAACCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGAAGCTGTTTGGTGTTCTCTGCTATGTGTCGCCCCATAACCTCA  450

seq1  CAGAGATTACAGGGACATCTTCCTTTTAGCAAAATAATCTAAGTCAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTACAGGGACATCTTCCTTTTAGCAAAATAATCTAAGTCAAATA  500

seq1  GATATTGTTCATCTTTCTTATGTAGCATTGGCCCGGGAGGGATGGCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTTCATCTTTCTTATGTAGCATTGGCCCGGGAGGGATGGCTTTA  550

seq1  TTTTTATATTACATCACTTATTAGAGTAAATGGTTTTTCTACACTGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATTACATCACTTATTAGAGTAAATGGTTTTTCTACACTGGTCA  600

seq1  AAAATGATCTTGTGTTAGTCATGGCCAACATAAGTGCAGTAAAATTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATCTTGTGTTAGTCATGGCCAACATAAGTGCAGTAAAATTTCTC  650

seq1  TCATATGAAGTAGAATAAAATTTGTTATTTGACTGCTAGCATTTTCTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGAAGTAGAATAAAATTTGTTATTTGACTGCTAGCATTTTCTATA  700

seq1  AGGGCAAGCAATTTTATTTCATAATATAATTATATCATTTGGAATGGTTG  750
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGGCAAGCAATTTTATTTTATAATATAATTATATCATTTGGAATGGTTG  750

seq1  TGTTCAGTTAAAATAAACACTCATTTATGTGGGGGAAGAACAAAGTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTTAAAATAAACACTCATTTATGTGGGGGAAGAACAAAGTTTTA  800

seq1  AGCTAAGTTATGACATATGATACAAGGTAAAACCAAATCAAGTGTTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTTATGACATATGATACAAGGTAAAACCAAATCAAGTGTTATTC  850

seq1  ACTCTATTAATAAGGTGTCCCTTCAGCACAGTTAATTCTATGTATTTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTAATAAGGTGTCCCTTCAGCACAGTTAATTCTATGTATTTACC  900

seq1  TTTCA-AGAAGAAGAAGAGGAGGA-AGA-AGAAGA-AGA-AGA-AGA-AG  943
      ||||| ||||||    |||||||| ||| ||| || ||| ||| ||| ||
seq2  TTTCAGAGAAGAGATGGAGGAGGAGAGAGAGAGGAGAGAGAGAGAGAGAG  950

seq1  AAGA-AGA-AGA-AGA-AGAAGAAGAAGAAGA-AGAAGAAGAAGAAGAAG  988
      | || ||| ||| ||| |||   || |||||| |||  ||| || || ||
seq2  ATGAGAGAGAGATAGAGAGACAGAGGAGAAGAGAGAGAAAGGAGGAGGAG  1000

seq1  AAGA-AGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGA  1037
      | || || ||                                        
seq2  AGGAGAGGAG----------------------------------------  1010

seq1  GGAGGAGGAGGAGGAGGAGCAGGAGCAGGAGGAGGAGGAGGAGGAGGAGG  1087
                                                        
seq2  --------------------------------------------------  1010

seq1  AGGAAAAGGAGGAGAAGGAGGAGAAGGAAGAAAAGGAGGAGAAGGAGGAG  1137
                                                        
seq2  --------------------------------------------------  1010

seq1  AAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAG  1170
                                       
seq2  ---------------------------------  1010

seq1: chr18_62062739_62062806
seq2: B6Ng01-093K11.g_89_379

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT  50

seq1  GTGTGTGTGTGTGTG-ATA-------------------------------  68
      | ||||||||||||| |||                               
seq2  GAGTGTGTGTGTGTGAATAAATAATAGAATGTTTTGAGTGTCTGATAATT  100

seq1  --------------------------------------------------  68
                                                        
seq2  TATTACACACAAGTGTCACTTATAGATTTCACAATGTCTCTCCCACTGGA  150

seq1  --------------------------------------------------  68
                                                        
seq2  TATATTTTTTATACGGGGGCACTTCACTCTCACACACACTTTAACTCTAT  200

seq1  --------------------------------------------------  68
                                                        
seq2  GTGTGTGCGTGTGTTTTAGTTCAAAAGACAAAGAGAGAGAGATATATAAA  250

seq1  -----------------------------------------  68
                                               
seq2  ATATGGGAGTGTTTTAGTGTTTGAACAGGTTGTGTGTGATA  291