BAC Information

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BAC

Clone NameB6Ng01-096I16
Chromosome18 (Build37)
Map Location 10,672,621 - 10,835,895
singlet/doubletdoublet
Overlap geneAbhd3, Mib1
Upstream geneColec12, LOC665111, LOC100039787, EG433161, Thoc1, Usp14, Rock1, LOC100039978, LOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880
Downstream geneLOC665296, 1010001N08Rik, Gata6, LOC665310, LOC100040148, Rbbp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096I16.bB6Ng01-096I16.g
ACCDH907165DH907166
length1,1401,175
definitionDH907165|Mus musculus domesticus DNA, BAC clone: B6Ng01-096I16, 5' end.DH907166|Mus musculus domesticus DNA, BAC clone: B6Ng01-096I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,834,761 - 10,835,895)(10,672,621 - 10,673,506)
sequence
gaattcccgaagtaaggaacttggggtggggatgaagcctgactgactac
acttagattattagcctgttaataatcacagtagacaggctggagctgaa
tggtatctcacttgcctggtgagataaaggtcaccaggtgtgtataaagc
catggattctattcctcatactccaagaaagagttctgaggttgtggcaa
tggatccacatagacatgaggaccttagtcagcatcttgtcacacttgct
ggcattgattttcattcgagtgtggggaggcaagacaagaacattcttgg
ggctcactgacaggctagtctacccaagtcagtgatctccaagttccatg
agagaccctgtctcaaaaaataagttagagagcaattcatgaatcaccta
acaatgacctttggccacacatacatgaacacgaacatacattagcacac
acacatgaacacacacgtttgaagaataaaaaaaaaaatcaagatttcta
gtcaatttactgaggaaagaaaattttctttaaatatgagaggctggcca
agagcccatgaccaaggtttggggaactccatgacagtgtgtgctgaaga
taacctcaccatctgcacccagccaaggcctcttcagcctacttaggagg
aagctgccaagaggtttgcttctctgagaaaaatcagagctgtatccatc
aatgtacatttttttctgcgctgacacacccagaactgtgataggccagt
gaaaagttctggtcctggtcaccgatttgtttataatctgattaaacaga
gatgtacttgcagaaaatgctttgtaagcacttgctatgcctcaatctaa
ctgcaggctagcctggggtgggtctttatcatatatacttgctatgcctc
aatctaactgcaggctagcctggggtgggtctttatcatatatttgttgc
agaaatggttgttttgcaacattcaggtagaaggatctattggccttaga
gttgcaggaaaagactcctggctgggggccagtatattagactgtgtgct
ggacaggaaggaagaatcagcccaacgtttgacttttcttctggagcaaa
gtcttgccgcatagcattcatcccacacaggttaacgcct
gaattcttgaatcttgtgttcctgaaatcagcaacacatgaacacctcca
actgtgccaccatctcaaatgataattaaaattcatggaccaccgtagta
ttagtccataaatggctgaacatggtaaaacagatcccagggaaacaacc
tcctaggccctggtagaacaagaactctagaagtattctcttgttaagag
aaaatatttcaaagactttttcacatcctagagcttgccataagtaggat
ctggccaatttctagcatgccacgaaagcatatatcctcctgtctcagtg
caaagtgaatggcatccttaatggcactggcttcttcagaaaccatgtct
tcttcactctcaactctccattggtttcgctaaacaaactctctctctct
ctctctccaggtagagtctttctcctctgcttctttattttacccaagtc
tcttaaaaaaatgtgcaactagcaatgtcatagcctgagtattagactgc
cttccttaaaatctcaagacacagaaaaaaataggtaagttaattaccag
aacataacacaatttaaaattcagtccttgtttccacctgaaatctcaca
tccaggctgctgctcttcacatttctatcaggactctagtcatctgaggt
accaccagaatcaccaattgatactgagactgtactatcttaaagggatt
tctaggtcagacagaaaaactgtcaaatttctcctggcaactaattccaa
aacttaagagtcatatataaagattctgtcatggcaaccaccccactcct
ggtaccaaatttctgtattagattatttttcattattttgacagaacatc
taagaaaacagtgtagggtttctgtctgcacctggagctggctctctgtc
acagggctctaatacccaggtggcgccaggagagctagctcccagagtgc
agacaggtctatgatgcagatagaaccatcactgctgctcagaggactca
cccagacccacaggacaagaaacaggggcagctggacaggagcttccagt
tctgtctgcgccagagctatctgtgcgcaaagctacataccaaattcggc
aggagaagactggtctcccaagagtgctacatactgcaacaagttaaaga
ccatttctcaatcctagcccaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_10834761_10835895
seq2: B6Ng01-096I16.b_46_1185 (reverse)

seq1  AGGCGTTAACCCCTGTGTGGATGAATGCTATGCG--CAGACTTTGCTCCC  48
      |||||||||||  |||| ||||||||||||||||   |||||||||||| 
seq2  AGGCGTTAACCTGTGTG-GGATGAATGCTATGCGGCAAGACTTTGCTCCA  49

seq1  AGAGGATAGTC-AACGCTGGGCTGATTCTTCCTTCCCTGTCCAGCACACA  97
        || | |||| |||| ||||||||||||||||| |||||||||||||||
seq2  GAAGAAAAGTCAAACGTTGGGCTGATTCTTCCTT-CCTGTCCAGCACACA  98

seq1  GTCT-ATATACTGGCCCCCAGCCAGGAGTC-TTTCCTGCAACTCTAAGGC  145
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTCTAATATACTGGCCCCCAGCCAGGAGTCTTTTCCTGCAACTCTAAGGC  148

seq1  CAATAGAT-CTTCTACCTGAATGTTGCAAAAC-ACCATTTCTGCAACAAA  193
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  CAATAGATCCTTCTACCTGAATGTTGCAAAACAACCATTTCTGCAACAAA  198

seq1  TATATGATAAAGACCCACCCCAGGCTAGCCTGCAGTTAGATTGAGGCATA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATAAAGACCCACCCCAGGCTAGCCTGCAGTTAGATTGAGGCATA  248

seq1  GCAAGTATATATGATAAAGACCCACCCCAGGCTAGCCTGCAGTTAGATTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTATATATGATAAAGACCCACCCCAGGCTAGCCTGCAGTTAGATTG  298

seq1  AGGCATAGCAAGTGCTTACAAAGCATTTTCTGCAAGTACATCTCTGTTTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAGCAAGTGCTTACAAAGCATTTTCTGCAAGTACATCTCTGTTTA  348

seq1  ATCAGATTATAAACAAATCGGTGACCAGGACCAGAACTTTTCACTGGCCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATTATAAACAAATCGGTGACCAGGACCAGAACTTTTCACTGGCCT  398

seq1  ATCACAGTTCTGGGTGTGTCAGCGCAGAAAAAAATGTACATTGATGGATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGTTCTGGGTGTGTCAGCGCAGAAAAAAATGTACATTGATGGATA  448

seq1  CAGCTCTGATTTTTCTCAGAGAAGCAAACCTCTTGGCAGCTTCCTCCTAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGATTTTTCTCAGAGAAGCAAACCTCTTGGCAGCTTCCTCCTAA  498

seq1  GTAGGCTGAAGAGGCCTTGGCTGGGTGCAGATGGTGAGGTTATCTTCAGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTGAAGAGGCCTTGGCTGGGTGCAGATGGTGAGGTTATCTTCAGC  548

seq1  ACACACTGTCATGGAGTTCCCCAAACCTTGGTCATGGGCTCTTGGCCAGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGTCATGGAGTTCCCCAAACCTTGGTCATGGGCTCTTGGCCAGC  598

seq1  CTCTCATATTTAAAGAAAATTTTCTTTCCTCAGTAAATTGACTAGAAATC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATATTTAAAGAAAATTTTCTTTCCTCAGTAAATTGACTAGAAATC  648

seq1  TTGATTTTTTTTTTTATTCTTCAAACGTGTGTGTTCATGTGTGTGTGCTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTTTTTTTTATTCTTCAAACGTGTGTGTTCATGTGTGTGTGCTA  698

seq1  ATGTATGTTCGTGTTCATGTATGTGTGGCCAAAGGTCATTGTTAGGTGAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTTCGTGTTCATGTATGTGTGGCCAAAGGTCATTGTTAGGTGAT  748

seq1  TCATGAATTGCTCTCTAACTTATTTTTTGAGACAGGGTCTCTCATGGAAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATTGCTCTCTAACTTATTTTTTGAGACAGGGTCTCTCATGGAAC  798

seq1  TTGGAGATCACTGACTTGGGTAGACTAGCCTGTCAGTGAGCCCCAAGAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATCACTGACTTGGGTAGACTAGCCTGTCAGTGAGCCCCAAGAAT  848

seq1  GTTCTTGTCTTGCCTCCCCACACTCGAATGAAAATCAATGCCAGCAAGTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTCTTGCCTCCCCACACTCGAATGAAAATCAATGCCAGCAAGTG  898

seq1  TGACAAGATGCTGACTAAGGTCCTCATGTCTATGTGGATCCATTGCCACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGATGCTGACTAAGGTCCTCATGTCTATGTGGATCCATTGCCACA  948

seq1  ACCTCAGAACTCTTTCTTGGAGTATGAGGAATAGAATCCATGGCTTTATA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGAACTCTTTCTTGGAGTATGAGGAATAGAATCCATGGCTTTATA  998

seq1  CACACCTGGTGACCTTTATCTCACCAGGCAAGTGAGATACCATTCAGCTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGGTGACCTTTATCTCACCAGGCAAGTGAGATACCATTCAGCTC  1048

seq1  CAGCCTGTCTACTGTGATTATTAACAGGCTAATAATCTAAGTGTAGTCAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTCTACTGTGATTATTAACAGGCTAATAATCTAAGTGTAGTCAG  1098

seq1  TCAGGCTTCATCCCCACCCCAAGTTCCTTACTTCGGGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTTCATCCCCACCCCAAGTTCCTTACTTCGGGAATTC  1140

seq1: chr18_10672621_10673506
seq2: B6Ng01-096I16.g_384_1241

seq1  TTAATGGCACTGGCTTCTTCAGAAACCATGTCTTCTTCACTCTCAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGCACTGGCTTCTTCAGAAACCATGTCTTCTTCACTCTCAACTCT  50

seq1  CCATTGGTTTCGCTAAACAAACTCTCTCTCTCTCTCTCTCCAGGTAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGTTTCGCTAAACAAACTCTCTCTCTCTCTCTCTCCAGGTAGAGT  100

seq1  CTTTCTCCTCTGCTTCTTTATTTTACCCAAGTCTCTTAAAAAAATGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCTCTGCTTCTTTATTTTACCCAAGTCTCTTAAAAAAATGTGCA  150

seq1  ACTAGCAATGTCATAGCCTGAGTATTAGACTGCCTTCCTTAAAATCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAATGTCATAGCCTGAGTATTAGACTGCCTTCCTTAAAATCTCAA  200

seq1  GACACAGAAAAAAATAGGTAAGTTAATTACCAGAACATAACACAATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAAAAAAATAGGTAAGTTAATTACCAGAACATAACACAATTTAA  250

seq1  AATTCAGTCCTTGTTTCCACCTGAAATCTCACATCCAGGCTGCTGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTCCTTGTTTCCACCTGAAATCTCACATCCAGGCTGCTGCTCTT  300

seq1  CACATTTCTATCAGGACTCTAGTCATCTGAGGTACCACCAGAATCACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCTATCAGGACTCTAGTCATCTGAGGTACCACCAGAATCACCAA  350

seq1  TTGATACTGAGACTGTACTATCTTAAAGGGATTTCTAGGTCAGACAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACTGAGACTGTACTATCTTAAAGGGATTTCTAGGTCAGACAGAAA  400

seq1  AACTGTCAAATTTCTCCTGGCAACTAATTCCAAAACTTAAGAGTCATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCAAATTTCTCCTGGCAACTAATTCCAAAACTTAAGAGTCATATA  450

seq1  TAAAGATTCTGTCATGGCAACCACCCCACTCCTGGTACCAAATTTCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTCTGTCATGGCAACCACCCCACTCCTGGTACCAAATTTCTGTA  500

seq1  TTAGATTATTTTTCATTATTTTGACAGAACATCTAAGAAAACAGTGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTATTTTTCATTATTTTGACAGAACATCTAAGAAAACAGTGTAGG  550

seq1  GTTTCTGTCTGCACCTGGAGCTGGCTCTCTGTCACAGGGCTCTAATACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTCTGCACCTGGAGCTGGCTCTCTGTCACAGGGCTCTAATACCC  600

seq1  AGGTGGCGCCAGGAGAGCTAGCCTCCCAGGAGTGCAGACAGGTCTATGAA  650
      ||||||||||||||||||||| |||||| ||||||||||||||||||| |
seq2  AGGTGGCGCCAGGAGAGCTAG-CTCCCA-GAGTGCAGACAGGTCTATG-A  647

seq1  TGCAGATAGAACCATCACTGCTGCTCAGAGGAACTCACCCAGAACCCACA  700
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  TGCAGATAGAACCATCACTGCTGCTCAGAGG-ACTCACCCAG-ACCCACA  695

seq1  GGACAAAGAAACCAAGGGGCAGCCTGGGACAGGAGCCTTCCAGTTTCTGT  750
      |||| |||||||  |||||||||   ||||||||| ||||||| ||||||
seq2  GGAC-AAGAAAC--AGGGGCAGC--TGGACAGGAG-CTTCCAG-TTCTGT  738

seq1  CTGCGCCCAGAGCTAATCTGTGCCGCAAAGCTACATACACAAATCCCGCC  800
      ||||| |||||||| ||||||| ||||||||||||||| |||||  || |
seq2  CTGCG-CCAGAGCT-ATCTGTG-CGCAAAGCTACATAC-CAAAT-TCGGC  783

seq1  AGGAGAGAACTGGTCTCCCAGGAGTGCCTACATACCTGCAAACACAGGT-  849
      ||||||  |||||||||||| ||||| ||||||| |||||   ||| || 
seq2  AGGAGAAGACTGGTCTCCCAAGAGTG-CTACATA-CTGCA---ACAAGTT  828

seq1  -AAGACCACTATTTCTCTTCAAATTCCTAGCCCAAGAG  886
       ||||||   |||||||     | ||||||||||||||
seq2  AAAGACC---ATTTCTC-----AATCCTAGCCCAAGAG  858