BAC Information

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BAC

Clone NameB6Ng01-097D21
Chromosome18 (Build37)
Map Location 27,498,652 - 27,733,644
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665977
Downstream geneEG665646, EG271505, EG625997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097D21.bB6Ng01-097D21.g
ACCDH907668DH907669
length8351,158
definitionDH907668|Mus musculus domesticus DNA, BAC clone: B6Ng01-097D21, 5' end.DH907669|Mus musculus domesticus DNA, BAC clone: B6Ng01-097D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,498,652 - 27,499,481)(27,732,493 - 27,733,644)
sequence
gaattcactgtctgataattctaacattgtaaaaaaacatcttggtgtgg
ttctaattattgctatgtctggttaattacatattttatcactttgggaa
tgctttgtaattttgtttacttgttggcttaaacacaacttcgatctgta
atagagtctaaagataaaaacagcgtgagaatttccattgttctggatag
gagtcagctggactttatgttcttggtagcctagttactaggatcttcct
ttgctgatcttttcctttctgttcctatagcctgctggggatccttttgt
tcctttccttagaagaggctgtgtcttgaagctctcaaagtgactggttt
gtcattatcaaagggtttctgtcatcaccatgccaccaggtgtagcatgg
agaggtggcttgagggagggttcttagcttctgataagtagcaaggctgc
ccagatgccctgcctctgggtgatgtgtcacagtgcttctattcctcctt
cccttcctgagtcttcactctgcattgcctcctcacagcagagcccccag
tctgctttctggaaacttccttgccttgtatccatgacctgctttttcct
tattttataagggaacaaatgcaaacaatggggggggggagttttttttt
ctccacattcatttcattttcattttaaatctagtttcaaagagaagacc
caaaatgcatatttattttgtttttatcatttttaccaaattattatctt
gtcttatcttaatattttcctcttctactttttcttggatagtgttttaa
ttactaagatataacaggataaagttttggagata
gaattcctttcttgacaattagcagttgttcaaggacaatgtaaagtggt
gttatattatcttcctttcattcaaggtaagtttagagatctgagactac
ctggacatataaacaaggatctatcaagggtaagggtacttttagagatt
gcaccagaggtgaaggtagagcagactgataagtctgtttgaaggggaga
ctctgtcaaggcgaatttcaatgtcacaaactttgttaggacagcagaga
aaaaggaaaagagagaatcaccgctttcctctgaaaccttttgctaccct
gatcagcagacaagtagtaactcagcacagcctactcccaacaagtgaag
gtctgattagagactggaaataactttccatctccagcctcaggagttct
gtaggacatattgaggcctttatgggtacatcaaggaaagaaacatcttc
tgcatccccatggaacctcatcctgaaaacttatgtctggggtcaaatag
caagtcttgctcctcggagaaagatcaattaatagattaaaagtgctaaa
cagccagattcacaaccatgattcttgaaagtagaaaagtggaatccaag
agaattcacgtacagccatgttccaagaagtagatacttcaggtcagata
attcaaatgcaatctgaactaaaaggcctagggtttgaactgacagccag
tgaccctgcagttccatcactcttgtttataaaacagggtatgttgtcaa
tgtaaaaataaattcaagagtaacaatattgagagctgactggaactaaa
caatatccagtagcaagaaattactcagaaacaacaaagggagagcaaca
aacgagggagaaaatgggaaaagcatagatgcatgctatcagcctgctct
tccaagcttttgaagtttcctgatgtcatgggaaaatacttttcacagtg
gggtgtgtttatatattccaatcttcttttatattaatccatctataaaa
actttacagtgtctcctaacctgaaatgtaaaccattggcttttcaacaa
atttttaatacggacaaatttatttgggtgctaggtaattttagtcccct
ctctctcgaaatcattcagtcactaaccaaaaatcttttaaaataaatgg
gctgtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27498652_27499481
seq2: B6Ng01-097D21.b_49_883

seq1  GAATTCACTGTCTGATAATTCTAACATTGTAAAAAAACATCTTGGTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCTGATAATTCTAACATTGTAAAAAAACATCTTGGTGTGG  50

seq1  TTCTAATTATTGCTATGTCTGGTTAATTACATATTTTATCACTTTGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTATTGCTATGTCTGGTTAATTACATATTTTATCACTTTGGGAA  100

seq1  TGCTTTGTAATTTTGTTTACTTGTTGGCTTAAACACAACTTCGATCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTAATTTTGTTTACTTGTTGGCTTAAACACAACTTCGATCTGTA  150

seq1  ATAGAGTCTAAAGATAAAAACAGCGTGAGAATTTCCATTGTTCTGGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTCTAAAGATAAAAACAGCGTGAGAATTTCCATTGTTCTGGATAG  200

seq1  GAGTCAGCTGGACTTTATGTTCTTGGTAGCCTAGTTACTAGGATCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGCTGGACTTTATGTTCTTGGTAGCCTAGTTACTAGGATCTTCCT  250

seq1  TTGCTGATCTTTTCCTTTCTGTTCCTATAGCCTGCTGGGGATCCTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATCTTTTCCTTTCTGTTCCTATAGCCTGCTGGGGATCCTTTTGT  300

seq1  TCCTTTCCTTAGAAGAGGCTGTGTCTTGAAGCTCTCAAAGTGACTGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTTAGAAGAGGCTGTGTCTTGAAGCTCTCAAAGTGACTGGTTT  350

seq1  GTCATTATCAAAGGGTTTCTGTCATCACCATGCCACCAGGTGTAGCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTATCAAAGGGTTTCTGTCATCACCATGCCACCAGGTGTAGCATGG  400

seq1  AGAGGTGGCTTGAGGGAGGGTTCTTAGCTTCTGATAAGTAGCAAGGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGCTTGAGGGAGGGTTCTTAGCTTCTGATAAGTAGCAAGGCTGC  450

seq1  CCAGATGCCCTGCCTCTGGGTGATGTGTCACAGTGCTTCTATTCCTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGCCCTGCCTCTGGGTGATGTGTCACAGTGCTTCTATTCCTCCTT  500

seq1  CCCTTCCTGAGTCTTCACTCTGCATTGCCTCCTCACAGCAGAGCCCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTGAGTCTTCACTCTGCATTGCCTCCTCACAGCAGAGCCCCCAG  550

seq1  TCTGCTTTCTGGAAACTTCCTTGCCTTGTATCCATGACCTGCTTTTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTCTGGAAACTTCCTTGCCTTGTATCCATGACCTGCTTTTTCCT  600

seq1  TATTTTATAAGGGAACAAATGCAAACAATGGGGGGGGGGAG-TTTCTTTT  649
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  TATTTTATAAGGGAACAAATGCAAACAATGGGGGGGGGGAGTTTTTTTTT  650

seq1  CTCCACATTCATTTCA-TTTCA-TTTAAATCTAG-TTCAAAGAGAAGA-C  695
      |||||||||||||||| ||||| ||||||||||| ||||||||||||| |
seq2  CTCCACATTCATTTCATTTTCATTTTAAATCTAGTTTCAAAGAGAAGACC  700

seq1  CAAAATGCATATTTATTTTGTTTTTATCAATTTTACC-AATTATTATCTT  744
      ||||||||||||||||||||||||||||| ||||||| |||||||||| |
seq2  CAAAATGCATATTTATTTTGTTTTTATCATTTTTACCAAATTATTATC-T  749

seq1  TGTCTTATCTTAATATTTTCCTC-TCTAACTTTTCATTGATAGTGTTTTA  793
      ||||||||||||||||||||||| ||||  ||||| | ||||||||||||
seq2  TGTCTTATCTTAATATTTTCCTCTTCTACTTTTTCTTGGATAGTGTTTTA  799

seq1  ATTACTAAGATTATAACAGGATAAAGTTTGTGAGATA  830
      |||||||||| ||||||||||||||||||  ||||||
seq2  ATTACTAAGA-TATAACAGGATAAAGTTTTGGAGATA  835

seq1: chr18_27732493_27733644
seq2: B6Ng01-097D21.g_69_1226 (reverse)

seq1  AATACAGCC--ATTATTTAAAAAGATTTAT-GTTAGTGACTGATGAATTT  47
      |||||||||   |||||| ||||||||| | ||||||||||||   ||||
seq2  AATACAGCCCATTTATTTTAAAAGATTTTTGGTTAGTGACTGAATGATTT  50

seq1  CGAGA-AGAGGGGACTAAAATTACTTAGCACCCAAAATAATTTGTCCGTA  96
      ||||| |||||||||||||||||| |||||||||||  ||||||||||||
seq2  CGAGAGAGAGGGGACTAAAATTACCTAGCACCCAAATAAATTTGTCCGTA  100

seq1  ATAAAAATTTGTTG-AAAGC--ATTGTTTACA-TTCA-GTTAGGAGACAC  141
       ||||||||||||| |||||  || ||||||| |||| ||||||||||||
seq2  TTAAAAATTTGTTGAAAAGCCAATGGTTTACATTTCAGGTTAGGAGACAC  150

seq1  TGTAAAAGTATTATAGATGGAATAAATATAAAAAGAAGATTGGAAATATA  191
      ||||||  | |||||||||| || ||||| ||||||||||||| ||||||
seq2  TGTAAAGTTTTTATAGATGG-ATTAATAT-AAAAGAAGATTGG-AATATA  197

seq1  TAAAACACACCCCACTGTGAAAAGTATTTT-CCATGACATCAGGAAACTT  240
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  T-AAACACACCCCACTGTGAAAAGTATTTTCCCATGACATCAGGAAACTT  246

seq1  CAAAAGCTTGGAAGAGCAGGCTGATAGCATGCATCTATGCTTTTCCCATT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTTGGAAGAGCAGGCTGATAGCATGCATCTATGCTTTTCCCATT  296

seq1  TTCTCCCTCGTTTGTTGCTCTCCCTTTGTTGTTTCTGAGTAATTTCTTGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTCGTTTGTTGCTCTCCCTTTGTTGTTTCTGAGTAATTTCTTGC  346

seq1  TACTGGATATTGTTTAGTTCCAGTCAGCTCTCAATATTGTTACTCTTGAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGATATTGTTTAGTTCCAGTCAGCTCTCAATATTGTTACTCTTGAA  396

seq1  TTTATTTTTACATTGACAACATACCCTGTTTTATAAACAAGAGTGATGGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTACATTGACAACATACCCTGTTTTATAAACAAGAGTGATGGA  446

seq1  ACTGCAGGGTCACTGGCTGTCAGTTCAAACCCTAGGCCTTTTAGTTCAGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGGTCACTGGCTGTCAGTTCAAACCCTAGGCCTTTTAGTTCAGA  496

seq1  TTGCATTTGAATTATCTGACCTGAAGTATCTACTTCTTGGAACATGGCTG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTGAATTATCTGACCTGAAGTATCTACTTCTTGGAACATGGCTG  546

seq1  TACGTGAATTCTCTTGGATTCCACTTTTCTACTTTCAAGAATCATGGTTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGAATTCTCTTGGATTCCACTTTTCTACTTTCAAGAATCATGGTTG  596

seq1  TGAATCTGGCTGTTTAGCACTTTTAATCTATTAATTGATCTTTCTCCGAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGGCTGTTTAGCACTTTTAATCTATTAATTGATCTTTCTCCGAG  646

seq1  GAGCAAGACTTGCTATTTGACCCCAGACATAAGTTTTCAGGATGAGGTTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGACTTGCTATTTGACCCCAGACATAAGTTTTCAGGATGAGGTTC  696

seq1  CATGGGGATGCAGAAGATGTTTCTTTCCTTGATGTACCCATAAAGGCCTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGATGCAGAAGATGTTTCTTTCCTTGATGTACCCATAAAGGCCTC  746

seq1  AATATGTCCTACAGAACTCCTGAGGCTGGAGATGGAAAGTTATTTCCAGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTCCTACAGAACTCCTGAGGCTGGAGATGGAAAGTTATTTCCAGT  796

seq1  CTCTAATCAGACCTTCACTTGTTGGGAGTAGGCTGTGCTGAGTTACTACT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATCAGACCTTCACTTGTTGGGAGTAGGCTGTGCTGAGTTACTACT  846

seq1  TGTCTGCTGATCAGGGTAGCAAAAGGTTTCAGAGGAAAGCGGTGATTCTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTGATCAGGGTAGCAAAAGGTTTCAGAGGAAAGCGGTGATTCTC  896

seq1  TCTTTTCCTTTTTCTCTGCTGTCCTAACAAAGTTTGTGACATTGAAATTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTTTTTCTCTGCTGTCCTAACAAAGTTTGTGACATTGAAATTC  946

seq1  GCCTTGACAGAGTCTCCCCTTCAAACAGACTTATCAGTCTGCTCTACCTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGACAGAGTCTCCCCTTCAAACAGACTTATCAGTCTGCTCTACCTT  996

seq1  CACCTCTGGTGCAATCTCTAAAAGTACCCTTACCCTTGATAGATCCTTGT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGGTGCAATCTCTAAAAGTACCCTTACCCTTGATAGATCCTTGT  1046

seq1  TTATATGTCCAGGTAGTCTCAGATCTCTAAACTTACCTTGAATGAAAGGA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTCCAGGTAGTCTCAGATCTCTAAACTTACCTTGAATGAAAGGA  1096

seq1  AGATAATATAACACCACTTTACATTGTCCTTGAACAACTGCTAATTGTCA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATATAACACCACTTTACATTGTCCTTGAACAACTGCTAATTGTCA  1146

seq1  AGAAAGGAATTC  1152
      ||||||||||||
seq2  AGAAAGGAATTC  1158