BAC Information

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BAC

Clone NameB6Ng01-097G13
Chromosome10 (Build37)18 (Build37)
Map Location 31,652,295 - 31,653,37018,109,337 - 18,109,863
singlet/doubletsingletsinglet
Overlap geneTcba1
Upstream geneLOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097G13.bB6Ng01-097G13.g
ACCDH907793DH907794
length1,069829
definitionDH907793|Mus musculus domesticus DNA, BAC clone: B6Ng01-097G13, 5' end.DH907794|Mus musculus domesticus DNA, BAC clone: B6Ng01-097G13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,652,295 - 31,653,370)(18,109,337 - 18,109,863)
sequence
gaattctgtatcatattaattgattgggcctagaatgacatcctaaataa
tattgtacattacaaatgaagatggctaactgctatttcaggtcaacaac
ttgtaattatttccacaagacattaccatgactgcttatttaggagatat
ttgtgattcaatgcaactaatttagctctaaaatggataattggttataa
agttcagcagaagaaatatgatctgtacttcgtttaccacacaacatgct
gtacacaatctccacttaaacctcacattattaaggaaatacaattgttt
gtcatttttgttgtttgtaatctttactaacattttaagcatatttatgt
ttttattcaccacttccaaatgttgtgataaataggatgattaactcaga
gggcaagagaattcttcaaatgttctgcacagaagcagctattgtccatg
ggtgataaaagttgataaggaaaggggtgggttagtgatgcaggagactg
agtggtatcatattggccttatgagtcagtgttctacctggggaaaaggt
aaatatggtaggatttgctttgcttttgcatatcactgtgagttaaactg
aaaagtttatagtgccctcaaagagctgtggaatggactgaactaaggat
aaaatgaaggatgctgcctttatccaagctcaaggtaaattctttatcat
ttagttcctaatcacaaattattttattatacttccagtagtgagattta
aggatggttacttccagattgtgaatattttaccttctatttcccagttt
acaagtagtagtagataatgctaataacaaacaaacgtccctgcacttag
tttgtcttctgaggctatttgagttctccattctgcttgtccatgtgttt
acaacacattaactatgtcaaaacacaccagcagcagccaatgaatgaaa
ggacctgattacccattaacacttatttcaacaagtagtatttgttgcct
ttaatgaacagtctatccaggtctaaattcatttgagaggttggtaattt
ctggtttggaacacatggt
gaattcctgatctttccaagacttttatcatgaatgggtgttggatttgt
caaatgctttctcagcatctaacgagatgatcatgtggtttttgtctttc
agtttgtttatatactggattaccttgatggatttctgtatattgaacca
tccctgcattcctgggatgaaacctacttggtcaggatggatgattgttt
tgatgtgttcttggattccgttagcaagaactttattgaggatttttgca
tcaatattcataagggatattggtctgaagttctctatctttgtggggac
tttttgtggtttaggtatcagagtaattgtggcttcatagagtgagttgg
gtagagtaccttctgtttctattttgtggaatagtttgtgaagaactggg
attagatcttctttgaaggtctgatagaactctgcactaaacccatctgg
tcctgggctttttttggttgggagactattagtgactgcttctatttctt
tgggggatatcaggctgtttagatcattaacctgatcttgattcaacttt
ggtacctggtatctgtctagaaacttctccatttcatctaggttctccag
ttttgttgagtatagccttttgtagaaggatctgatggtgtttttggatt
tcttcgagatctttttgttatgtcttcctttttcatttctgattttgtta
attagaatgcttttcccctgtgccctcttagtgagtctgggtaagggttt
tgtctatcttgttgatttttctcgaagaaccagcttctcgtttggttgat
tctctgaatagtctttcttgtttccactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_31652295_31653370
seq2: B6Ng01-097G13.b_47_1115

seq1  GAATTCTGTATCATATTAATTGATTGGGCCTAGAATGACATCCTAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATCATATTAATTGATTGGGCCTAGAATGACATCCTAAATAA  50

seq1  TATTGTACATTACAAATGAAGATGGCAAACTGCTATTTCAGGTCAACAAC  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATTGTACATTACAAATGAAGATGGCTAACTGCTATTTCAGGTCAACAAC  100

seq1  TTGTAATTATTTCCACAAGACATTACCATGACTGCTTATTTAGGAGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTATTTCCACAAGACATTACCATGACTGCTTATTTAGGAGATAT  150

seq1  TTGTGATTCAATGCAACTAATTTAGCTCTAAAATGGATAATTGGTTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTCAATGCAACTAATTTAGCTCTAAAATGGATAATTGGTTATAA  200

seq1  AGTTCAGCAGAAGAAATATGATCTGTACTTCGTTTACCACACAACATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGCAGAAGAAATATGATCTGTACTTCGTTTACCACACAACATGCT  250

seq1  GTACACAATCTCCACTTAAACCTCACATTATTAAGGAAATACAATTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAATCTCCACTTAAACCTCACATTATTAAGGAAATACAATTGTTT  300

seq1  GTCATTTTTGTTGTTTGTAATCTTTACTAACATTTTAAGCATATTTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTTGTTGTTTGTAATCTTTACTAACATTTTAAGCATATTTATGT  350

seq1  TTTTATTCACCACTTCCAAATGTTGTGATAAATAGGATGATTAACTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCACCACTTCCAAATGTTGTGATAAATAGGATGATTAACTCAGA  400

seq1  GGGCAAGAGAATTCTTCAAATGTTCTGCACAGAAGCAGCTATTGTCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGAGAATTCTTCAAATGTTCTGCACAGAAGCAGCTATTGTCCATG  450

seq1  GGTGATAAAAGTTGATAAGGAAAGGGGTGGGTTAGTGATGCAGGAGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATAAAAGTTGATAAGGAAAGGGGTGGGTTAGTGATGCAGGAGACTG  500

seq1  AGTGGTATCATATTGGCCTTATGAGTCAGTGTTCTACCTGGGGAAAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTATCATATTGGCCTTATGAGTCAGTGTTCTACCTGGGGAAAAGGT  550

seq1  AAATATGGTAGGATTTGCTTTGCTTTTGCATATCACTGTGAGTTAAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGGTAGGATTTGCTTTGCTTTTGCATATCACTGTGAGTTAAACTG  600

seq1  AAAAGTTTATAGTGCCCTCAAAGAGCTGTGGAATGGACTGAACTAAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTATAGTGCCCTCAAAGAGCTGTGGAATGGACTGAACTAAGGAT  650

seq1  AAAATGAAGGATGCTGCCTTTATCCAAGCTCAAGGTAAATTCTTTATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAGGATGCTGCCTTTATCCAAGCTCAAGGTAAATTCTTTATCAT  700

seq1  TTAGTTCCTAATCACAAATTATTTTATTATACTTCCAGTAGTGAGATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCCTAATCACAAATTATTTTATTATACTTCCAGTAGTGAGATTTA  750

seq1  AGGATGGTTACTTCCAGATTGTGAATATTTTACCTTCTATTTCCCAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTTACTTCCAGATTGTGAATATTTTACCTTCTATTTCCCAGTTT  800

seq1  ACAAGTAGTAGTAGATAATGCTAATAACAAACAAACGTCCCTGCACTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGTAGTAGATAATGCTAATAACAAACAAACGTCCCTGCACTTAG  850

seq1  TTTGTCTTCTGAGGCTATTTGAGTTCTTCCATTCTGCTTGTCCATGTGTT  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTGTCTTCTGAGGCTATTTGAGTTC-TCCATTCTGCTTGTCCATGTGTT  899

seq1  TACAACACATTAACTAATGTCAAAAACACACCAGCAGCAAGCCAAATGAA  950
      ||||||||||||||| ||||| |||||||||||||||| |||| ||||||
seq2  TACAACACATTAACT-ATGTC-AAAACACACCAGCAGC-AGCC-AATGAA  945

seq1  TGAAAGGACCTGATAACCCATTAACACTTATTTCAACCAGTAGTATTTGT  1000
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  TGAAAGGACCTGATTACCCATTAACACTTATTTCAACAAGTAGTATTTGT  995

seq1  TGCTATTCAGGGACAGTCTACTCAGGTTCTAAAGTTCATTTGTAGAAGTT  1050
      |||  || | | ||||||||  |||| |||||| |||||||| ||| |||
seq2  TGCCTTTAATGAACAGTCTATCCAGG-TCTAAA-TTCATTTG-AGAGGTT  1042

seq1  GTTATTTTCT-GTTTGGAACACATGGT  1076
      | || ||||| ||||||||||||||||
seq2  GGTAATTTCTGGTTTGGAACACATGGT  1069

seq1: chr18_18109337_18109863
seq2: B6Ng01-097G13.g_361_898 (reverse)

seq1  AAGTGGAAACAAGA---ACTATTCAGAGAATCAACCAATCGAGGAGCTGG  47
      ||||||||||||||   ||||||||||||||||||||| |||| ||||||
seq2  AAGTGGAAACAAGAAAGACTATTCAGAGAATCAACCAAACGAGAAGCTGG  50

seq1  TTCTTTGAG-AAAATCAACAAGGTAGAC-AAACCCTTAGCCAGACTCACT  95
      ||||| ||| |||||||||||| ||||| ||||||||| |||||||||||
seq2  TTCTTCGAGAAAAATCAACAAGATAGACAAAACCCTTACCCAGACTCACT  100

seq1  -AGAGGGCACAGGG--AAAGCATTCTAATTAACAAAATCAGAAATG-AAA  141
       |||||||||||||  |||||||||||||||||||||||||||||| |||
seq2  AAGAGGGCACAGGGGAAAAGCATTCTAATTAACAAAATCAGAAATGAAAA  150

seq1  AGGGAGACATAAC-AACAGATCCTGAAGAAATCC-AAAACACCATCAGAT  189
      ||| ||||||||| || |||||  |||||||||| |||||||||||||||
seq2  AGGAAGACATAACAAAAAGATCTCGAAGAAATCCAAAAACACCATCAGAT  200

seq1  CCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATGAAATG  239
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTAGATGAAATG  250

seq1  GAGAAGTTTCTAGACAGATACCAGGTACCAAAGTTGAATCAAGATCAGGT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTTCTAGACAGATACCAGGTACCAAAGTTGAATCAAGATCAGGT  300

seq1  TAATGATCTAAACAGCCCGATATCCCCCAAAGAAATAGAAGCAGTCATTA  339
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  TAATGATCTAAACAGCCTGATATCCCCCAAAGAAATAGAAGCAGTCACTA  350

seq1  ATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAG  400

seq1  TTCTATCAGACCTCCAAAGAAGATCTAATCCCAGTTCTTCACAAACTATT  439
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCACAAACTATT  450

seq1  CCACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAGCCA  489
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCACAAAATAGAAACAGAAGGTACTCTACCCAACTCACTCTATGAAGCCA  500

seq1  CAATTACTCTGATACCTAAACCACAAAAAGACCCCACA  527
      |||||||||||||||||||||||||||||| |||||||
seq2  CAATTACTCTGATACCTAAACCACAAAAAGTCCCCACA  538