BAC Information

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BAC

Clone NameB6Ng01-098H04
Chromosome18 (Build37)
Map Location 90,459,444 - 90,592,910
singlet/doubletdoublet
Overlap geneEif3s6-ps2, LOC665526
Upstream geneDok6, LOC383320, LOC620693
Downstream geneTxndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098H04.bB6Ng01-098H04.g
ACCDH908537DH908538
length1,155910
definitionDH908537|Mus musculus domesticus DNA, BAC clone: B6Ng01-098H04, 5' end.DH908538|Mus musculus domesticus DNA, BAC clone: B6Ng01-098H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,591,738 - 90,592,910)(90,459,444 - 90,460,374)
sequence
gaattcaagtatatttttcatctaaaagtagaagttattaacaacagaga
gagctctttggtcacctcatacaactggctagacaaccaactagatgtat
gcatgagtatttatacaccagagggggctgcaaataacagttgaggagga
atgtgatgtattgtgttgagagggacttgcagttgtcaatctggagatgc
aggaagggaagaaatatccaatttcttatcaggaaggtagtcaggtagaa
ggaattccatgtttctcattggacaggcaggtttttgttatactcagtac
ttcattttattggatcagagctgctcacattaggaagggtgaattaatca
tattaatcagtcaacagatctgaacattagcatcataaaaaatatattga
cattacactgatgtgtcaacaagtatgtggacagtcttcaacctgatgtc
taactttataaaacagatggtctgtgacgtgtccatggtctttcttagct
ttgtgatctagtagttttaaacagccagtcttaatttaatatatgacttt
tcaaactaaaattgtctaagcaaaaccagcaatcaataaaataaaaaata
ctcaaagcaggatatggtgttacagatacatcaaacatatatatgtgtga
aatgtatattgttgcatgtgaatgtgcatgtgtatacacacaaacatgta
tgtgcctcaaactacctgtgtagctaaaaacaactttgatcatctggtct
tcctacctccatctttggagtgttgggactagaggcatgcactaccatgc
tcagttttacatattgccaggatcaaaactggtaagcactcttccaactg
acctaaaacttcagtcttttatttataatttactgttttctaggcgagtc
taaagagctcttctaactcaataaaattgtattaagatgtttttatagca
ttcatattttcctatgggaaatatggcacaaattccaatggtactcattt
tgtaaattagacattttttatttaaaactgttattaatgttaaaatcatg
caataataaaaattctaggccaatattgaccagactatcttaaacttcta
actttataccgttaggaaatggcatcagactctagctgatctactcagtg
aagac
gaattcattgaacataaagaatttgagctagtgactacatggaaccttca
cccctacaatctagtctttggtgcaggaagatactcttaaaggtaccaaa
agagaaacataaacaactcagccacaaaccttttacctacaatatgccct
gcctgtaagatgtgctattgcaatgttggcccagaactttcgaaccaaca
gcaaaccagatgcgaagacgggtagaggattaagaaaagagaattagcat
ttggtgggataccatgatttctatcatatgcaaatattgttcatagaaac
aatttcttattctgtgataagattagtattactatgtataaatactacag
ccagagagccaagtccacagtatagacagttctttatatatatatataga
atttatattctattttttattttattttatttttacaatctagtcattgc
ccctctcctggtccaccttcccacagtttgtaatcccattccttctcccc
gctgtctccaaaagaatgttcaactcaccccctaccaggcctctctgctc
ctcaagtctcttaagggttaggcacctcttctcccactgaggccatatta
ggcagtcctctgctgtatatgtgtcagggacctcagaccagttcatgtat
gctgcctggttggtggctcagtgtctgtgagatctcaggggacaattctt
atctcagtaattaagaaccttgaacctaagccaaatgaaacctctcttta
gagagggagagggagagagacagagagacagagacacaaagaaagagaag
agagaatggagaaaagaaaggaaaagaaagaacggaaagaaaggaaggaa
ggaaggaaggaaggaaggaagagagagagaaagagagaagaggaggtagg
gaaagaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_90591738_90592910
seq2: B6Ng01-098H04.b_44_1198 (reverse)

seq1  GTCTTCACTGGAGTAGATCAGCTAGGAGTCTTGAATGCCATTT-CTAACT  49
      ||||||||| |||||||||||||| ||||||   ||||||||| ||||| 
seq2  GTCTTCACT-GAGTAGATCAGCTA-GAGTCT--GATGCCATTTCCTAACG  46

seq1  GTATATAAATTTATGAAGATTTATAGATTAAGTCTGGTCAATATTGGCTA  99
      |  |||||| ||| |||| |||| ||||  ||||||||||||||||||  
seq2  G--TATAAAGTTA-GAAG-TTTA-AGAT--AGTCTGGTCAATATTGGCCT  89

seq1  TGAATTTTTAATTTATTTGCATGATTTTTAACATTAATAACAGTTTATAA  149
       |||||||||  ||| |||||||| ||||||||||||||||||||| |||
seq2  AGAATTTTTA--TTA-TTGCATGA-TTTTAACATTAATAACAGTTT-TAA  134

seq1  AATAAAAAAATGTCTAATTTACAAAATGAAGTACCATTGGAATTTGTGCC  199
      |   |||||||||||||||||||||||| |||||||||||||||||||||
seq2  A--TAAAAAATGTCTAATTTACAAAATG-AGTACCATTGGAATTTGTGCC  181

seq1  ATATTTCCCATAGGAAAATATGAATGCTATAAAAACATCTTAATACAATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCCATAGGAAAATATGAATGCTATAAAAACATCTTAATACAATT  231

seq1  TTATTGAGTTAGAAGAGCTCTTTAGACTCGCCTAGAAAACAGTAAATTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAGTTAGAAGAGCTCTTTAGACTCGCCTAGAAAACAGTAAATTAT  281

seq1  AAATAAAAGACTGAAGTTTTAGGTCAGTTGGAAGAGTGCTTACCAGTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGACTGAAGTTTTAGGTCAGTTGGAAGAGTGCTTACCAGTTTT  331

seq1  GATCCTGGCAATATGTAAAACTGAGCATGGTAGTGCATGCCTCTAGTCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGGCAATATGTAAAACTGAGCATGGTAGTGCATGCCTCTAGTCCC  381

seq1  AACACTCCAAAGATGGAGGTAGGAAGACCAGATGATCAAAGTTGTTTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCCAAAGATGGAGGTAGGAAGACCAGATGATCAAAGTTGTTTTTA  431

seq1  GCTACACAGGTAGTTTGAGGCACATACATGTTTGTGTGTATACACATGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGGTAGTTTGAGGCACATACATGTTTGTGTGTATACACATGCA  481

seq1  CATTCACATGCAACAATATACATTTCACACATATATATGTTTGATGTATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACATGCAACAATATACATTTCACACATATATATGTTTGATGTATC  531

seq1  TGTAACACCATATCCTGCTTTGAGTATTTTTTATTTTATTGATTGCTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACACCATATCCTGCTTTGAGTATTTTTTATTTTATTGATTGCTGGT  581

seq1  TTTGCTTAGACAATTTTAGTTTGAAAAGTCATATATTAAATTAAGACTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTAGACAATTTTAGTTTGAAAAGTCATATATTAAATTAAGACTGG  631

seq1  CTGTTTAAAACTACTAGATCACAAAGCTAAGAAAGACCATGGACACGTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAAAACTACTAGATCACAAAGCTAAGAAAGACCATGGACACGTCA  681

seq1  CAGACCATCTGTTTTATAAAGTTAGACATCAGGTTGAAGACTGTCCACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCATCTGTTTTATAAAGTTAGACATCAGGTTGAAGACTGTCCACAT  731

seq1  ACTTGTTGACACATCAGTGTAATGTCAATATATTTTTTATGATGCTAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTGACACATCAGTGTAATGTCAATATATTTTTTATGATGCTAATG  781

seq1  TTCAGATCTGTTGACTGATTAATATGATTAATTCACCCTTCCTAATGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCTGTTGACTGATTAATATGATTAATTCACCCTTCCTAATGTGA  831

seq1  GCAGCTCTGATCCAATAAAATGAAGTACTGAGTATAACAAAAACCTGCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTGATCCAATAAAATGAAGTACTGAGTATAACAAAAACCTGCCT  881

seq1  GTCCAATGAGAAACATGGAATTCCTTCTACCTGACTACCTTCCTGATAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATGAGAAACATGGAATTCCTTCTACCTGACTACCTTCCTGATAAG  931

seq1  AAATTGGATATTTCTTCCCTTCCTGCATCTCCAGATTGACAACTGCAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGATATTTCTTCCCTTCCTGCATCTCCAGATTGACAACTGCAAGT  981

seq1  CCCTCTCAACACAATACATCACATTCCTCCTCAACTGTTATTTGCAGCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCAACACAATACATCACATTCCTCCTCAACTGTTATTTGCAGCCC  1031

seq1  CCTCTGGTGTATAAATACTCATGCATACATCTAGTTGGTTGTCTAGCCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGTGTATAAATACTCATGCATACATCTAGTTGGTTGTCTAGCCAG  1081

seq1  TTGTATGAGGTGACCAAAGAGCTCTCTCTGTTGTTAATAACTTCTACTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGAGGTGACCAAAGAGCTCTCTCTGTTGTTAATAACTTCTACTTT  1131

seq1  TAGATGAAAAATATACTTGAATTC  1173
      ||||||||||||||||||||||||
seq2  TAGATGAAAAATATACTTGAATTC  1155

seq1: chr18_90459444_90460374
seq2: B6Ng01-098H04.g_66_975

seq1  GAATTCATTGAACATAAAGAATTTGAGCTAGTGACTACATGGAACCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAACATAAAGAATTTGAGCTAGTGACTACATGGAACCTTCA  50

seq1  CCCCTACAATCTAGTCTTTGGTGCAGGAAGATACTCTTAAAGGTACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACAATCTAGTCTTTGGTGCAGGAAGATACTCTTAAAGGTACCAAA  100

seq1  AGAGAAACATAAACAACTCAGCCACAAACCTTTTACCTACAATATGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACATAAACAACTCAGCCACAAACCTTTTACCTACAATATGCCCT  150

seq1  GCCTGTAAGATGTGCTATTGCAATGTTGGCCCAGAACTTTCGAACCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAAGATGTGCTATTGCAATGTTGGCCCAGAACTTTCGAACCAACA  200

seq1  GCAAACCAGATGCGAAGACGGGTAGAGGATTAAGAAAAGAGAATTAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCAGATGCGAAGACGGGTAGAGGATTAAGAAAAGAGAATTAGCAT  250

seq1  TTGGTGGGATACCATGATTTCTATCATATGCAAATATTGTTCATAGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGGATACCATGATTTCTATCATATGCAAATATTGTTCATAGAAAC  300

seq1  AATTTCTTATTCTGTGATAAGATTAGTATTACTATGTATAAATACTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTATTCTGTGATAAGATTAGTATTACTATGTATAAATACTACAG  350

seq1  CCAGAGAGCCAAGTCCACAGTATAGACAGTTCTTTATATATATATATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGCCAAGTCCACAGTATAGACAGTTCTTTATATATATATATAGA  400

seq1  ATTTATATTCTATTTTTTATTTTATTTTATTTTTACAATCTAGTCATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTCTATTTTTTATTTTATTTTATTTTTACAATCTAGTCATTGC  450

seq1  CCCTCTCCTGGTCCACCTTCCCACAGTTTGTAATCCCATTCCTTCTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCTGGTCCACCTTCCCACAGTTTGTAATCCCATTCCTTCTCCCC  500

seq1  GCTGTCTCCAAAAGAATGTTCAACTCACCCCCTACCAGGCCTCTCTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCCAAAAGAATGTTCAACTCACCCCCTACCAGGCCTCTCTGCTC  550

seq1  CTCAAGTCTCTTAAGGGTTAGGCACCTCTTCTCCCACTGAGGCCATATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTCTCTTAAGGGTTAGGCACCTCTTCTCCCACTGAGGCCATATTA  600

seq1  GGCAGTCCTCTGCTGTATATGTGTCAGGGACCTCAGACCAGTTCATGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCCTCTGCTGTATATGTGTCAGGGACCTCAGACCAGTTCATGTAT  650

seq1  GCTGCCTGGTTGGTGGCTCAGTGTCTGTGAGATCTCAGGGGACAATTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTGGTTGGTGGCTCAGTGTCTGTGAGATCTCAGGGGACAATTCTT  700

seq1  ATCTCAGTAATTAAGAACCTTGAACCTAAGCCAAATGAAACCTCTCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTAATTAAGAACCTTGAACCTAAGCCAAATGAAACCTCTCTTTA  750

seq1  GAGAGGGAGAGGGAGAGAGACAGAGAGACAGAGACACAAAGAAAGAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAGAGGGAGAGAGACAGAGAGACAGAGACACAAAGAAAGAGAAG  800

seq1  AGAGAATGGAGAAAAGAAAGGAAAAGAAAGAACGGAAAGAAAGGAAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGGAGAAAAGAAAGGAAAAGAAAGAACGGAAAGAAAGGAAGGAA  850

seq1  GGAAGGAAGGAAGGAAGGAAGAGAGAGAGAAAGAGAGAAAGAGGGAGGTA  900
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  GGAAGGAAGGAAGGAAGGAAGAGAGAGAGAAAGAGAG-AAGA-GGAGGTA  898

seq1  GGGAAGAAGGGAGGGAGGAAGGAAAGAAGGA  931
      |                   |||||||||||
seq2  G-------------------GGAAAGAAGGA  910