BAC Information

Click to search

BAC

Clone NameB6Ng01-098J16
Chromosome18 (Build37)
Map Location 24,757,080 - 24,859,112
singlet/doubletdoublet
Overlap geneSlc39a6, Epl2, Mocos
Upstream geneDtna, Mapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395
Downstream geneFhod3, 5730494M16Rik, AW554918, Brunol4, LOC100041241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098J16.bB6Ng01-098J16.g
ACCDH908646DH908647
length1,1331,100
definitionDH908646|Mus musculus domesticus DNA, BAC clone: B6Ng01-098J16, 5' end.DH908647|Mus musculus domesticus DNA, BAC clone: B6Ng01-098J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,757,080 - 24,758,260)(24,858,009 - 24,859,112)
sequence
gaattcacaattcaccttccttagattccccaaggctggaattacagctg
ctaacatacaaggcttcattcacttaaaaatgtatttattgccagatgtg
gtggcacatgcctttaatcccagcacttgggaggcagaggcaggcggatt
tctgagttcaaggacagcctggtctacaaagtgagttccaggacagccag
ggctatacagaaaaaccctgtctcaaaaaacaaaacaaacaaaagtattt
attttatcttatgtatagtgtatatgcctgagtgtgtgcctgtgcaccac
atgtattcagaagccctcagaggtcacagagagcactggattcccaggaa
ctggagttacggatggttgtgaggcacctgtgggtgctaggaactgaacc
aggtattttgcaagaacagtcagtgctcttgaccagagacacctctccgg
tgccaacaccttcccccgtcccaccccatgcctttttaaaagaagcaaac
aacttttaacatgtatatttagaacattcaggtcacagaacaactaagac
attgtatctagagcgacaatgaaaaatagtctgaaatataaagagaagta
caacctaagtgcatctactagaaactttttatggaattgaggcaactgta
cctatttgtaaagaataggtctttggagggatttctgccttcttctcact
tgctgtatgaatcagacaagcccgagcatcaatttgattgatgatggctg
ggcagagatagttaaattccgttgcattcaacagagcctggatgctcatg
ccatgggatgtcagcagcttggttgtattgaaacactgaaggaaatgaca
gggaaaaaaatcacaggacagaaattcccactgggagactcttaaaatgc
agtctgactcatcaccttttactcactaaagctactttgttgaaaaaatt
aaatgccagttaaattcagcttctgctttcagcactttggaaattgcttt
agtagccttaagaagatacactgaacacgacgacagtatgtcatctctag
gaaaaaaacctctgtggaacagcttggggataagtggagatccaagcctg
ttacctcatgtattaagtataggaaataggttt
gaattcttcacaaagtcctaacagaaaatgcagagctaaaaataaagact
tctaatgaatcatttatgcgtaatgtataatgaatatatagtaaatgctc
cgcttttataatcgagaatctacaatgacacagagtcattttaaccccta
tggagatgtgccactggggttagtatcatgagctttactgagccctctca
gcagatcgtctatccacacggagctaacttactatgtcataagatctctg
tggtgaagaaatcagttgaattaatctttttcttttttcttgagatggta
ggggatggaaaccagacctcggtacgtgctaggtgagtaaagcactctac
tcctgagccacatccccaggcctcttatttttatattccttctaactttg
gtaagatgagagaacattaaaatgcttataataaacacaacaatgcacac
tggacaaaacctcagatggcaagaaaaataatagggacgcacaggcaagc
tcaggacctcggcgagagcattggctttggaaagggtaacaacactccac
cgctgaaaaccacccagcactcataatggtatggtcacgtgccagtggca
tgcaaagatgaaaatgaggtgccatgctgggcacacatacctacacacac
ctacctttctcccccgactctcggagagcgtctggaagacgtcctggttc
cgctgcccggtttgctggttgatacaaatcatctggcacctgtggcaagg
ccctagaacctggcagggagagaggacctgtgatgaggccgccaggcaga
gcgtgggagaatcacaggcaggtggccagcccctaagcacaggagtgggg
ttgcggagaaaagaagggtgtgaacggcaatctcaggaagtttctggaga
cgaggaatctgagtgggaaagcactcagaacttggaagacaaactgaagc
cacctcctggaggcagcacaggcgctgtgagcttggaaaccaacatacac
atagacctaaggactagaaggataacatagactcctgagcagggattcta
tcgtcatgaagctgaaacttatgggaagccttgtgatcctggaggtggca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_24757080_24758260
seq2: B6Ng01-098J16.b_51_1183

seq1  GAATTCACAATTCACCTTCCTTAGATTCCCCAAGGCTGGAATTACAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATTCACCTTCCTTAGATTCCCCAAGGCTGGAATTACAGCTG  50

seq1  CTAACATACAAGGCTTCATTCACTTAAAAATGTATTTATTGCCAGATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATACAAGGCTTCATTCACTTAAAAATGTATTTATTGCCAGATGTG  100

seq1  GTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATT  150

seq1  TCTGAGTTCAAGGACAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCAAGGACAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  200

seq1  GGCTATACAGAAAAACCCTGTCTCAAAAAACAAAACAAACAAAAGTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATACAGAAAAACCCTGTCTCAAAAAACAAAACAAACAAAAGTATTT  250

seq1  ATTTTATCTTATGTATAGTGTATATGCCTGAGTGTGTGCCTGTGCACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCTTATGTATAGTGTATATGCCTGAGTGTGTGCCTGTGCACCAC  300

seq1  ATGTATTCAGAAGCCCTCAGAGGTCACAGAGAGCACTGGATTCCCAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCAGAAGCCCTCAGAGGTCACAGAGAGCACTGGATTCCCAGGAA  350

seq1  CTGGAGTTACGGATGGTTGTGAGGCACCTGTGGGTGCTAGGAACTGAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTACGGATGGTTGTGAGGCACCTGTGGGTGCTAGGAACTGAACC  400

seq1  AGGTATTTTGCAAGAACAGTCAGTGCTCTTGACCAGAGACACCTCTCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTTGCAAGAACAGTCAGTGCTCTTGACCAGAGACACCTCTCCGG  450

seq1  TGCCAACACCTTCCCCCGTCCCACCCCATGCCTTTTTAAAAGAAGCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACACCTTCCCCCGTCCCACCCCATGCCTTTTTAAAAGAAGCAAAC  500

seq1  AACTTTTAACATGTATATTTAGAACATTCAGGTCACAGAACAACTAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAACATGTATATTTAGAACATTCAGGTCACAGAACAACTAAGAC  550

seq1  ATTGTATCTAGAGCGACAATGAAAAATAGTCTGAAATATAAAGAGAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATCTAGAGCGACAATGAAAAATAGTCTGAAATATAAAGAGAAGTA  600

seq1  CAACCTAAGTGCATCTACTAGAAACTTTTTATGGAATTGAGGCAACTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAAGTGCATCTACTAGAAACTTTTTATGGAATTGAGGCAACTGTA  650

seq1  CCTATTTGTAAAGAATAGGTCTTTGGAGGGATTTCTGCCTTCTTCTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTGTAAAGAATAGGTCTTTGGAGGGATTTCTGCCTTCTTCTCACT  700

seq1  TGCTGTATGAATCAGACAAGCCCGAGCATCAATTTGATTGATGATGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATGAATCAGACAAGCCCGAGCATCAATTTGATTGATGATGGCTG  750

seq1  GGCAGAGATAGTTAAATTCCGTTGCATTCAACAGAGCCTGGATGCTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGATAGTTAAATTCCGTTGCATTCAACAGAGCCTGGATGCTCATG  800

seq1  CCATGGGATGTCAGCAGCTTGGTTGTATTGAAACACTGAAGGAAATGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGATGTCAGCAGCTTGGTTGTATTGAAACACTGAAGGAAATGACA  850

seq1  GGGAAAAAAAATCACA-GACAGAAATTCCCACTGGAAGACTC-TAAAATG  898
      ||| |||||||||||| |||||||||||||||||| |||||| |||||||
seq2  GGG-AAAAAAATCACAGGACAGAAATTCCCACTGGGAGACTCTTAAAATG  899

seq1  CAGTCTGACTCATCACC-TTTACTCACTAAAGCTACTTTGTTGATAAAAT  947
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  CAGTCTGACTCATCACCTTTTACTCACTAAAGCTACTTTGTTGAAAAAAT  949

seq1  T-AATGCCAGTTAAAATCAGC-TCTGCTTTCAGCACTTTGGAATTTGCTT  995
      | ||||||||||||| ||||| ||||||||||||||||||||| ||||||
seq2  TAAATGCCAGTTAAATTCAGCTTCTGCTTTCAGCACTTTGGAAATTGCTT  999

seq1  CTAGTAGCCTAAAGAAGATACACTG-ACACGACGACAGTATGTCATTCTC  1044
       ||||||||| |||||||||||||| ||||||||||||||||||| ||| 
seq2  -TAGTAGCCTTAAGAAGATACACTGAACACGACGACAGTATGTCA-TCT-  1046

seq1  CAAGGGAGAAAACCTCCTGTGGAACAAGCTTGGGGATAAGTGGAGATTCA  1094
      | ||| | ||||||| ||||||||| |||||||||||||||||||||   
seq2  CTAGGAAAAAAACCT-CTGTGGAAC-AGCTTGGGGATAAGTGGAGAT--C  1092

seq1  CAAGCCTGTTAACTCATTGTATAAAGTTATTAAGGAAATGAGCTTTAATT  1144
      ||||||||||| |||| ||||| ||| |||  |||||||  | ||     
seq2  CAAGCCTGTTACCTCA-TGTATTAAG-TAT--AGGAAATAGGTTT-----  1133

seq1  TCAAAATGGGGTTCATTAGAGATTGAGAAATAGGTTT  1181
                                           
seq2  -------------------------------------  1133

seq1: chr18_24858009_24859112
seq2: B6Ng01-098J16.g_68_1167 (reverse)

seq1  TGCAACCTCCAGGAT-ACAAGGCTT-CCAT-AGTCTCAGCTCTATGCGGA  47
      ||| ||||||||||| ||||||||| |||| ||| ||||||  |||  ||
seq2  TGCCACCTCCAGGATCACAAGGCTTCCCATAAGTTTCAGCTTCATGACGA  50

seq1  TAG-ATCCCTGCTCAGGAGTCTATGTTAATACTTCTAGTTCCTTTTAGGT  96
      ||| ||||||||||||||||||||||| || |||||||| |   ||||| 
seq2  TAGAATCCCTGCTCAGGAGTCTATGTT-ATCCTTCTAGTCC---TTAGG-  95

seq1  TCTATGTGTATTGTTGGTTTTCAAAGCTCACAGCGCCCTGTGCTGGCT-C  145
      |||||||||| |||||| |||| |||||||||||| ||||||||| || |
seq2  TCTATGTGTA-TGTTGG-TTTCCAAGCTCACAGCG-CCTGTGCTGCCTCC  142

seq1  AGG-GGTGGCTTCTGTTTGTCTTCCAAGTTCTGAGTGCTTTCCCTCCTCA  194
      ||| ||||||||| ||||||||||||||||||||||||||||||  ||||
seq2  AGGAGGTGGCTTCAGTTTGTCTTCCAAGTTCTGAGTGCTTTCCC-ACTCA  191

seq1  GATTCCTCGTCTCCAGGAACTTCCTGAGATTGCCGTTCACACCCTTCTTT  244
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  GATTCCTCGTCTCCAGAAACTTCCTGAGATTGCCGTTCACACCCTTC-TT  240

seq1  TTCTCCGCAACCCCACTCCTGTGCTTAGGGGCTGGCCACCTGCCTGTGAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCGCAACCCCACTCCTGTGCTTAGGGGCTGGCCACCTGCCTGTGAT  290

seq1  TCTCCCACGCTCTGCCTGGCGGCCTCATCACAGGTCCTCTCTCCCTGCCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACGCTCTGCCTGGCGGCCTCATCACAGGTCCTCTCTCCCTGCCA  340

seq1  GGTTCTAGGGCCTTGCCACAGGTGCCAGATGATTTGTATCAACCAGCAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAGGGCCTTGCCACAGGTGCCAGATGATTTGTATCAACCAGCAAA  390

seq1  CCGGGCAGCGGAACCAGGACGTCTTCCAGACGCTCTCCGAGAGTCGGGGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCAGCGGAACCAGGACGTCTTCCAGACGCTCTCCGAGAGTCGGGGG  440

seq1  AGAAAGGTAGGTGTGTGTAGGTATGTGTGCCCAGCATGGCACCTCATTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTAGGTGTGTGTAGGTATGTGTGCCCAGCATGGCACCTCATTTT  490

seq1  CATCTTTGCATGCCACTGGCACGTGACCATACCATTATGAGTGCTGGGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGCATGCCACTGGCACGTGACCATACCATTATGAGTGCTGGGTG  540

seq1  GTTTTCAGCGGTGGAGTGTTGTTACCCTTTCCAAAGCCAATGCTCTCGCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGCGGTGGAGTGTTGTTACCCTTTCCAAAGCCAATGCTCTCGCC  590

seq1  GAGGTCCTGAGCTTGCCTGTGCGTCCCTATTATTTTTCTTGCCATCTGAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCTGAGCTTGCCTGTGCGTCCCTATTATTTTTCTTGCCATCTGAG  640

seq1  GTTTTGTCCAGTGTGCATTGTTGTGTTTATTATAAGCATTTTAATGTTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCCAGTGTGCATTGTTGTGTTTATTATAAGCATTTTAATGTTCT  690

seq1  CTCATCTTACCAAAGTTAGAAGGAATATAAAAATAAGAGGCCTGGGGATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTACCAAAGTTAGAAGGAATATAAAAATAAGAGGCCTGGGGATG  740

seq1  TGGCTCAGGAGTAGAGTGCTTTACTCACCTAGCACGTACCGAGGTCTGGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGGAGTAGAGTGCTTTACTCACCTAGCACGTACCGAGGTCTGGT  790

seq1  TTCCATCCCCTACCATCTCAAGAAAAAAGAAAAAGATTAATTCAACTGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCCCCTACCATCTCAAGAAAAAAGAAAAAGATTAATTCAACTGAT  840

seq1  TTCTTCACCACAGAGATCTTATGACATAGTAAGTTAGCTCCGTGTGGATA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACCACAGAGATCTTATGACATAGTAAGTTAGCTCCGTGTGGATA  890

seq1  GACGATCTGCTGAGAGGGCTCAGTAAAGCTCATGATACTAACCCCAGTGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATCTGCTGAGAGGGCTCAGTAAAGCTCATGATACTAACCCCAGTGG  940

seq1  CACATCTCCATAGGGGTTAAAATGACTCTGTGTCATTGTAGATTCTCGAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCCATAGGGGTTAAAATGACTCTGTGTCATTGTAGATTCTCGAT  990

seq1  TATAAAAGCGGAGCATTTACTATATATTCATTATACATTACGCATAAATG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGCGGAGCATTTACTATATATTCATTATACATTACGCATAAATG  1040

seq1  ATTCATTAGAAGTCTTTATTTTTAGCTCTGCATTTTCTGTTAGGACTTTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAGAAGTCTTTATTTTTAGCTCTGCATTTTCTGTTAGGACTTTG  1090

seq1  TGAAGAATTC  1104
      ||||||||||
seq2  TGAAGAATTC  1100