BAC Information

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BAC

Clone NameB6Ng01-099E18
Chromosome18 (Build37)
Map Location 56,807,657 - 56,960,054
singlet/doubletdoublet
Overlap geneLmnb1, March3
Upstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171
Downstream geneC330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099E18.bB6Ng01-099E18.g
ACCDH909132DH909133
length742929
definitionDH909132|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E18, 5' end.DH909133|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,807,657 - 56,808,397)(56,959,129 - 56,960,054)
sequence
gaattcattgagaagggcttcggaagaagtaggaggggaataagagaggc
taattagtttatataagatcaaaatacactacacagtgtcagggagatgg
ccaagcctcacaaactaagtttgatcccaggacctgaatagtaggggaag
aaaactgactctcttctcaaattgtcatctcacctccacaagtgtgctgt
gacacacatccaaaactaaattaaaaatagatatcttgccaggcgtggtg
gtgtacgcctttaatcccagcactcgggaggcagaggcaggtggatttct
gagttcgaggccagcctggtctacaaagtgagttccaggacagccagggc
tacacagagaaaccctgtctcaggaaaaacaaacaaacaaaaaaaaatag
atatcttaacacatgatagacatatgtggaattgtcaaaaaataaggata
tctgtggcaaactgcttataagatccattcaatgggggctggagagatgg
ctcagaggttgagagcactgactattctaccagaggtcctgagttcaatt
cccagcaaccacatggtggctcacagccatctgtaatgagatctggcgct
ctcttctggcatgcaggcatatatgcaggcagagcactgtgtacatttta
aataaataaataaatcgtaaaaaaaaaatcattcaatgagtgctgctaag
aggttcagaaggcccagtgatgaaccttggggggggggggga
gaattctagcctcatgacccagtcccctcccaaaggctccacctctaaac
accaccaacctggctgcttgctgatccttctccctttgctcatcagcaca
gcatgtgcacaggcagagcccacagcttcctgccaatcaccaggttttcc
acagaaatgagggttgaagatatagtcattggtagagcagggcctggcag
gtaaggccctaggttcatccctgacacaggggatagaggcagggctaaga
ggagggaaggaaggagggaaagaaagggagatgaaaaacactgttaatga
agcctggtttcctattgatactcagtttgtctcttaaatccaaaactggt
tgtcaagagggaagaatgtatagacggaactccgaagccttttagggaag
tggagctaattcagtatgacagtatcatggtgaacatatgtcactacata
cttgccaaacacaaagaacgtttaacaccaagagcaaactctggggtcac
ctatggactttcaggaacagtggcgtgtcagtgtaggctgattgattgac
ccgtgtgccgttctgttcaggatgttgatgacggcaggcattggttcctt
ttctcatttctgcgacagaagcaacttaaggtttacggttcattagggca
gagaaggtccactagcagggccagctcctgcccagtgcaggaggggcata
aggccgtttgctctcctcgtggctgtccaagaattagaccacacaagctg
gaactggggtcaggctataacctacaaggcctgcctccccttgagctggg
cccctcctcctaaagttccacaagctcccaaaacagtgctactagctagg
caccaggtattcaacacgttgagggtgcgtgttgcagtggctatttagga
gtggggaagaagtggtatgtggggaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_56807657_56808397
seq2: B6Ng01-099E18.b_47_788

seq1  GAATTCATTGAGAAGGGCTTCGGAAGAAGTAGGAGGGGAATAAGAGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAGAAGGGCTTCGGAAGAAGTAGGAGGGGAATAAGAGAGGC  50

seq1  TAATTAGTTTATATAAGATCAAAATACACTACACAGTGTCAGGGAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGTTTATATAAGATCAAAATACACTACACAGTGTCAGGGAGATGG  100

seq1  CCAAGCCTCACAAACTAAGTTTGATCCCAGGACCTGAATAGTAGGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTCACAAACTAAGTTTGATCCCAGGACCTGAATAGTAGGGGAAG  150

seq1  AAAACTGACTCTCTTCTCAAATTGTCATCTCACCTCCACAAGTGTGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGACTCTCTTCTCAAATTGTCATCTCACCTCCACAAGTGTGCTGT  200

seq1  GACACACATCCAAAACTAAATTAAAAATAGATATCTTGCCAGGCGTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACATCCAAAACTAAATTAAAAATAGATATCTTGCCAGGCGTGGTG  250

seq1  GTGTACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCT  300

seq1  GAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGC  350

seq1  TACACAGAGAAACCCTGTCTCAGGAAAAACAAACAAACAAAAAAAAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTCTCAGGAAAAACAAACAAACAAAAAAAAATAG  400

seq1  ATATCTTAACACATGATAGACATATGTGGAATTGTCAAAAAATAAGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTAACACATGATAGACATATGTGGAATTGTCAAAAAATAAGGATA  450

seq1  TCTGTGGCAAACTGCTTATAAGATCCATTCAATGGGGGCTGGAGAGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCAAACTGCTTATAAGATCCATTCAATGGGGGCTGGAGAGATGG  500

seq1  CTCAGAGGTTGAGAGCACTGACTATTCTACCAGAGGTCCTGAGTTCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGTTGAGAGCACTGACTATTCTACCAGAGGTCCTGAGTTCAATT  550

seq1  CCCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGAGATCTGGCGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGAGATCTGGCGCT  600

seq1  CTCTTCTGGCATGCAGGCATATATGCAGGCAGAGCACTGTGTACA-TTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCTTCTGGCATGCAGGCATATATGCAGGCAGAGCACTGTGTACATTTTA  650

seq1  AATAAATAAATAAATCGTAAAAAAAAAATCATTCAATGAGTGCTGCTAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATCGTAAAAAAAAAATCATTCAATGAGTGCTGCTAAG  700

seq1  AGGTTCAGAAGGCCCAGTGATGAACCTTGGGGGGGGGGGGGA  741
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAGAAGGCCCAGTGATGAACCTTGGGGGGGGGGGGGA  742

seq1: chr18_56959129_56960054
seq2: B6Ng01-099E18.g_67_995 (reverse)

seq1  AGAATCCCCACATACCAC-TCTT-CCCACTCCT-AATAGCCACTGCAACA  47
      ||| |||||||||||||| |||| ||||||||| ||||||||||||||||
seq2  AGATTCCCCACATACCACTTCTTCCCCACTCCTAAATAGCCACTGCAACA  50

seq1  CGCACCCTC-ACGTGTTTGAATACCTGGTGCCTAGCTAGTAGCACTGTTT  96
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  CGCACCCTCAACGTG-TTGAATACCTGGTGCCTAGCTAGTAGCACTGTTT  99

seq1  TGGGAGCTTGTGGAACTTTAGGAGGAGGGGCCCAGCTCAAGGGGAGGCAG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTTGTGGAACTTTAGGAGGAGGGGCCCAGCTCAAGGGGAGGCAG  149

seq1  GCCTTGTAGGTTATAGCCTGACCCCAGTTCCAGCTTGTGTGGTCTAATTC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTAGGTTATAGCCTGACCCCAGTTCCAGCTTGTGTGGTCTAATTC  199

seq1  TTGGACAGCCACGAGGAGAGCAAACGGCCTTATGCCCCTCCTGCACTGGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAGCCACGAGGAGAGCAAACGGCCTTATGCCCCTCCTGCACTGGG  249

seq1  CAGGAGCTGGCCCTGCTAGTGGACCTTCTCTGCCCTAATGAACCGTAAAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTGGCCCTGCTAGTGGACCTTCTCTGCCCTAATGAACCGTAAAC  299

seq1  CTTAAGTTGCTTCTGTCGCAGAAATGAGAAAAGGAACCAATGCCTGCCGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTTGCTTCTGTCGCAGAAATGAGAAAAGGAACCAATGCCTGCCGT  349

seq1  CATCAACATCCTGAACAGAACGGCACACGGGTCAATCAATCAGCCTACAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACATCCTGAACAGAACGGCACACGGGTCAATCAATCAGCCTACAC  399

seq1  TGACACGCCACTGTTCCTGAAAGTCCATAGGTGACCCCAGAGTTTGCTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACGCCACTGTTCCTGAAAGTCCATAGGTGACCCCAGAGTTTGCTCT  449

seq1  TGGTGTTAAACGTTCTTTGTGTTTGGCAAGTATGTAGTGACATATGTTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTAAACGTTCTTTGTGTTTGGCAAGTATGTAGTGACATATGTTCA  499

seq1  CCATGATACTGTCATACTGAATTAGCTCCACTTCCCTAAAAGGCTTCGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATACTGTCATACTGAATTAGCTCCACTTCCCTAAAAGGCTTCGGA  549

seq1  GTTCCGTCTATACATTCTTCCCTCTTGACAACCAGTTTTGGATTTAAGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCGTCTATACATTCTTCCCTCTTGACAACCAGTTTTGGATTTAAGAG  599

seq1  ACAAACTGAGTATCAATAGGAAACCAGGCTTCATTAACAGTGTTTTTCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGAGTATCAATAGGAAACCAGGCTTCATTAACAGTGTTTTTCAT  649

seq1  CTCCCTTTCTTTCCCTCCTTCCTTCCCTCCTCTTAGCCCTGCCTCTATCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTCTTTCCCTCCTTCCTTCCCTCCTCTTAGCCCTGCCTCTATCC  699

seq1  CCTGTGTCAGGGATGAACCTAGGGCCTTACCTGCCAGGCCCTGCTCTACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCAGGGATGAACCTAGGGCCTTACCTGCCAGGCCCTGCTCTACC  749

seq1  AATGACTATATCTTCAACCCTCATTTCTGTGGAAAACCTGGTGATTGGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTATATCTTCAACCCTCATTTCTGTGGAAAACCTGGTGATTGGCA  799

seq1  GGAAGCTGTGGGCTCTGCCTGTGCACATGCTGTGCTGATGAGCAAAGGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGTGGGCTCTGCCTGTGCACATGCTGTGCTGATGAGCAAAGGGA  849

seq1  GAAGGATCAGCAAGCAGCCAGGTTGGTGGTGTTTAGAGGTGGAGCCTTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATCAGCAAGCAGCCAGGTTGGTGGTGTTTAGAGGTGGAGCCTTTG  899

seq1  GGAGGGGACTGGGTCATGAGGCTAGAATTC  926
      ||||||||||||||||||||||||||||||
seq2  GGAGGGGACTGGGTCATGAGGCTAGAATTC  929