BAC Information

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BAC

Clone NameB6Ng01-099J15
Chromosome6 (Build37)18 (Build37)
Map Location 124,667,002 - 124,668,00368,429,863 - 68,430,885
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2
Downstream genePtpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099J15.bB6Ng01-099J15.g
ACCDH909350DH909351
length1,0751,024
definitionDH909350|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J15, 5' end.DH909351|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,667,002 - 124,668,003)(68,429,863 - 68,430,885)
sequence
gaattccaggacagccagggctacactgagaaatcctgtctagaataaaa
tgagggagggagggaggagggagacattgatcacactgggactcggccag
cagagggcacaagcagtctggcctgtagcattcggactgccgccgggtcc
tcaacaggacctaagctgggagcagccgatctcaggcccaactacacctt
caccccacccgcaggtctaccaaatgaacccacagacttaatgacatctt
tttaaaagctgaagcagctgaggctttgctgagccaaactaaaaacgtga
tgaccccagggggagctgcttccttggtaaccagctcctggttagctccg
ggagatggcgtgttcctcccaagggtttccgtgttcctaagtcccggtgt
gctgttacttagtcaccaggtacgatgagctatttgcactgaagtttctc
cctgtggaggaggccttcccacccccacagcccgggagcccaactgaacc
tattttccacagactacctttcttacgaagaccgagtctccagtactggg
gaaatcaagccattgctcacggacttcgctagaaccgttgccttggtttt
ttccttctgggcagacaagaatacaatagaggaagggtgagcctgactgg
gcgagagggtgcagcagagcttcagctccttgggttcttagaggaagtag
gtctctcctgaagcctaagacagaccaccgaatggaccggaatcgtatcc
cacgttccccatggacatttcaggttcccagggtgaaaagacaacggaag
ccagcgtcttgggaccaaatgtgttttccaaatcttgctgctgttctgaa
ggcagccattttgtctctttcccattgttcccctttgccaagtgatacac
acacacacacacccatccagaatgttaaaggtcagaggctgttggcctgg
aaggcctaggtggtcttcaaggcttccaagtcactgctgaaggaactgac
ccgggggcctcttttccagacagtgtaggagcttcatactttcaccatcc
aacactgcacttgaagaatggaccc
gaattcttcatttccatactgagcccctttcctgaattctaatgctgaat
agccactactttcctcacttgcatatctgaatccacattaaaacttagtc
agagcaaatccattgacctcacctgtcccggtcagtcctgcttcttccaa
aattttactcacaacagggaatggaaactttgttcttctagctgctcagg
ccaaaatgattagctcttaatgtgttcctttaacataattggcatgcata
tcattaagactgcatatcattatttcttgaaaccatattcactgtccttt
cctctgcctctcctgagagtactagggtgctgaacatgcaaaggcctagg
cttcagagacaaacaaccttctcagaggcttttgtttttacgtgggccta
atgacaaaggttctcaacacaccagctgtggtgattttgcttaaagtcac
cccatagcttttcaagccttgcagacgaccgttctgcctcctgctcattc
cgtcctgcacagccatctagcacccagcccccggcagtcctggctgggaa
cacagcctcccctgctccctgccctgccccccactcccatcctgccccca
aagagatcaatctgctaactgcttaaagcacctcccatctaaatttgcaa
tcttgggtagggtgaggggaaagggacaggatggacaaaaacaaaaaaac
aacccaaaataacacacatcaaaatacctctttatatggcttttctttca
aaatatattaatatattttaaaatatttatcttatgtgcatgagtctttt
acctgcacatatacatgtatgtgcactgcctgtgagcctggtgctgactg
acagaagtcaaggtgtcattggaccttccagaaccaaaggtacagatagt
gcaagcacttaactatactctctctaacatttagtatcattaaaaatgcg
ttcattatatgtgtgttgtgtgtgtatttacccctcaacttctgcctctt
ccactgtcctttctctttcttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124667002_124668003
seq2: B6Ng01-099J15.b_114_1117

seq1  AGACATTGATCACACTGGGACTCGGCCAGCAGAGGGCACAAGCAGTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGATCACACTGGGACTCGGCCAGCAGAGGGCACAAGCAGTCTGG  50

seq1  CCTGTAGCATTCGGACTGCCGCCGGGTCCTCAACAGGACCTAAGCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGCATTCGGACTGCCGCCGGGTCCTCAACAGGACCTAAGCTGGGA  100

seq1  GCAGCCGATCTCAGGCCCAACTACACCTTCACCCCACCCGCAGGTCTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCGATCTCAGGCCCAACTACACCTTCACCCCACCCGCAGGTCTACC  150

seq1  AAATGAACCCACAGACTTAATGACATCTTTTTAAAAGCTGAAGCAGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACCCACAGACTTAATGACATCTTTTTAAAAGCTGAAGCAGCTGA  200

seq1  GGCTTTGCTGAGCCAAACTAAAAACGTGATGACCCCAGGGGGAGCTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGCTGAGCCAAACTAAAAACGTGATGACCCCAGGGGGAGCTGCTT  250

seq1  CCTTGGTAACCAGCTCCTGGTTAGCTCCGGGAGATGGCGTGTTCCTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTAACCAGCTCCTGGTTAGCTCCGGGAGATGGCGTGTTCCTCCCA  300

seq1  AGGGTTTCCGTGTTCCTAAGTCCCGGTGTGCTGTTACTTAGTCACCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCCGTGTTCCTAAGTCCCGGTGTGCTGTTACTTAGTCACCAGGT  350

seq1  ACGATGAGCTATTTGCACTGAAGTTTCTCCCTGTGGAGGAGGCCTTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGAGCTATTTGCACTGAAGTTTCTCCCTGTGGAGGAGGCCTTCCCA  400

seq1  CCCCCACAGCCCGGGAGCCCAACTGAACCTATTTTCCACAGACTACCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACAGCCCGGGAGCCCAACTGAACCTATTTTCCACAGACTACCTTT  450

seq1  CTTACGAAGACCGAGTCTCCAGTACTGGGGAAATCAAGCCATTGCTCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGAAGACCGAGTCTCCAGTACTGGGGAAATCAAGCCATTGCTCACG  500

seq1  GACTTCGCTAGAACCGTTGCCTTGGTTTTTTCCTTCTGGGCAGACAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCGCTAGAACCGTTGCCTTGGTTTTTTCCTTCTGGGCAGACAAGAA  550

seq1  TACAATAGAGGAAGGGTGAGCCTGACTGGGCGAGAGGGTGCAGCAGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAGAGGAAGGGTGAGCCTGACTGGGCGAGAGGGTGCAGCAGAGCT  600

seq1  TCAGCTCCTTGGGTTCTTAGAGGAAGTAGGTCTCTCCTGAAGCCTAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTTGGGTTCTTAGAGGAAGTAGGTCTCTCCTGAAGCCTAAGAC  650

seq1  AGACCACCGAATGGACCGGAATCGTATCCCACGTTCCCCATGGACA-TTC  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGACCACCGAATGGACCGGAATCGTATCCCACGTTCCCCATGGACATTTC  700

seq1  AGGTTCCCAGGGTGAAAAGACAACGGAAGCCAGCGTCTTGGGACCAAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCAGGGTGAAAAGACAACGGAAGCCAGCGTCTTGGGACCAAATG  750

seq1  TG-TTTCCAAATCTTGCTGCTGTTCTGAAGGCAGCCATTTTGTCTCTTTC  798
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCAAATCTTGCTGCTGTTCTGAAGGCAGCCATTTTGTCTCTTTC  800

seq1  CCATTGTTCCCCTTTGCCAAGTGATACACACACACACACACCCATCCAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTCCCCTTTGCCAAGTGATACACACACACACACACCCATCCAGA  850

seq1  AGGTTAAAGGTCAGAGGCTGTTGGCCTGG-AGGCCTAGGTGGTCTTCAAG  897
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGTTAAAGGTCAGAGGCTGTTGGCCTGGAAGGCCTAGGTGGTCTTCAAG  900

seq1  GCTCCAAGGTCACTGCTGAAGGAACTGACCCGGGGGCCATCTTTACCAGA  947
      ||| | | |||||||||||||||||||||||||||||| ||||| |||||
seq2  GCTTCCAAGTCACTGCTGAAGGAACTGACCCGGGGGCC-TCTTTTCCAGA  949

seq1  CAGTGTTAGGAGCTTCATACTTCAACCATCCAACACTGCACTGGAAG-AT  996
      ||||| ||||||||||||||||  |||||||||||||||||| |||| ||
seq2  CAGTG-TAGGAGCTTCATACTTTCACCATCCAACACTGCACTTGAAGAAT  998

seq1  GGACCC  1002
      ||||||
seq2  GGACCC  1004

seq1: chr18_68429863_68430885
seq2: B6Ng01-099J15.g_66_1089

seq1  GAATTCTTCATTTCCATACTGAGCCCCTTTCCTGAATTCTAATGCTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAATTCTTCATTTCCATACTGAGCCCCTTTCCTGAATTCTAATGCTGAAT  50

seq1  AGCCACTACTTTCCTCACTTGCATATCTGAATCCACATTAAAACTTAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTACTTTCCTCACTTGCATATCTGAATCCACATTAAAACTTAGTC  100

seq1  AGAGCAAATCCATTGACCTCAGCTGTCCCGGTCAGTCCTGCTTCTTCCAA  150
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAGCAAATCCATTGACCTCACCTGTCCCGGTCAGTCCTGCTTCTTCCAA  150

seq1  AATTTTACTCAGAACAGGGAATGGAAACTTTGTTCTTCTAGCTGCTCAGG  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACTCACAACAGGGAATGGAAACTTTGTTCTTCTAGCTGCTCAGG  200

seq1  CCAAAATGATTAGCTCTTAATGTGTTCCTTTAACATAATTGGCATGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGATTAGCTCTTAATGTGTTCCTTTAACATAATTGGCATGCATA  250

seq1  TCATTAAGACTGCATATCATTATTTCTTGAAACCATATTCACTGTCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAGACTGCATATCATTATTTCTTGAAACCATATTCACTGTCCTTT  300

seq1  CCTCTGCCTCTCCTGAGAGTACTAGGGTGCTGAACATGCGAAGGCCTAGG  350
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTCTGCCTCTCCTGAGAGTACTAGGGTGCTGAACATGCAAAGGCCTAGG  350

seq1  CTTCAGTGACAAACAGCCTTCTCAGAGGCTTTTGTTTTTACGTGGCCCTA  400
      |||||| |||||||| ||||||||||||||||||||||||||||| ||||
seq2  CTTCAGAGACAAACAACCTTCTCAGAGGCTTTTGTTTTTACGTGGGCCTA  400

seq1  ATGAGAAAGGTTCTCAACACAGCAGCTGTGGTGATTTTGCTTAAAGTCAC  450
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGACAAAGGTTCTCAACACACCAGCTGTGGTGATTTTGCTTAAAGTCAC  450

seq1  CCCATAGCTTTTCAAGCCTTGCAGACGACCGTTCTGCCTCCTGCTCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGCTTTTCAAGCCTTGCAGACGACCGTTCTGCCTCCTGCTCATTC  500

seq1  CGTCCTGCACAGCCATCTAGCACCCAGCCCCCGGCAGTCCTGGCTGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTGCACAGCCATCTAGCACCCAGCCCCCGGCAGTCCTGGCTGGGAA  550

seq1  CACAGCCTCCCCTGCTCCCTGCCCTGCCCCCCACTCCCATCCTGCCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTCCCCTGCTCCCTGCCCTGCCCCCCACTCCCATCCTGCCCCCA  600

seq1  AAGAGATCAATCTGCTAACTGCTTAAAGCACCTCCCATCTAAATTTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATCAATCTGCTAACTGCTTAAAGCACCTCCCATCTAAATTTGCAA  650

seq1  TCTTGGGTAGGGTGAGGGGAAAGGGACAGGATGGACAAAAACAAAAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTAGGGTGAGGGGAAAGGGACAGGATGGACAAAAACAAAAAAAC  700

seq1  AACCCAAAATAACACACATCAAAATACCTCTTTATATGGCTTTTCTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAATAACACACATCAAAATACCTCTTTATATGGCTTTTCTTTCA  750

seq1  AAATATATTAATATATTTTAAAATATTTATCTTATGTGCATGAGTCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTAATATATTTTAAAATATTTATCTTATGTGCATGAGTCTTTT  800

seq1  ACCTGCACATATACATGTATGTGCACTGCCTGTGAGCCTGGTGCTGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACATATACATGTATGTGCACTGCCTGTGAGCCTGGTGCTGACTG  850

seq1  ACAGAAGTCAAAGGTGTCATTGGACCCTCCAGAACCAAAGGTACAGATAG  900
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  ACAGAAGTC-AAGGTGTCATTGGACCTTCCAGAACCAAAGGTACAGATAG  899

seq1  TGCAAGCACTTAACTATACTCTCTCTTAACATTTAGTATCATTTAAAAAT  950
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  TGCAAGCACTTAACTATACTCTCTC-TAACATTTAGTATCA-TTAAAAAT  947

seq1  GCGTACATTATATGTGTG-TGTGTGTGTATTTAACCCCTCCACTTCTGCC  999
      |||| ||||||||||||| ||||||||||||| ||||||| |||||||||
seq2  GCGTTCATTATATGTGTGTTGTGTGTGTATTT-ACCCCTCAACTTCTGCC  996

seq1  TCTCCCACTGTCCTTTCCCTTCCT----  1023
      ||| ||||||||||||| ||| ||    
seq2  TCTTCCACTGTCCTTTCTCTTTCTTCCT  1024