BAC Information

Click to search

BAC

Clone NameB6Ng01-099L10
Chromosome18 (Build37)
Map Location 89,074,665 - 89,183,991
singlet/doubletdoublet
Overlap geneRttn
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneCd226, Dok6, LOC383320, LOC620693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099L10.bB6Ng01-099L10.g
ACCDH909432DH909433
length1,1341,086
definitionDH909432|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L10, 5' end.DH909433|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,182,846 - 89,183,991)(89,074,665 - 89,075,761)
sequence
gaattccactacaaagtgaagacacaggtttagtgacattttggacacct
aaacattcctgtaaaataatacaaatattttgaaattagtaaacagtatt
tctaagagtactctttcttctgtttgtaatttgtttccactgttagtttt
cacatcattaaaaggttatttatctagtaagatttttctacccaactgtt
caagtctatatgggctatgtaatgttcaatgagtagtcttcagaaataaa
aaacacaatcataactttcaaagtcaacagatataaaagacatgacaaaa
cgctaaaactctaacctaatgtgtgacttgatttactgaagcttgagaag
gaaaaacaaaattcaaattaaaaaaaaaaaaaaggaaggaaggaaagaaa
aggagagagggaaggaaggcgagagtggtgtgtagtgagaatatgtgaag
catacaaaagaaagaaacataaaccctttctcaattataagggaaaatgt
tttcctagaacctgttcaatgtgagagagaaaaatagtgatcagaaatat
taagagtatgtaaatccaataagtggaagcacacggaatactgagtcaca
aacctaaactcaatttcttttatactgcaaattactctcttcttacaact
agcaacaattcacaggtcaaaatacatacatgtgatctcacagacttata
tgcatataatttttttaactattaacttaatgctacaaataagtactcca
aactcttgagagctaaggcttcaatcttaatgaagaaaaatagctgtcac
ttccttaagacacacacaattctgagcttccatttattcatccataaatg
taataattccttctataagccttctatggccatctcctaaatggtactac
ccaaattacagctttaaaatcatcttcagatggccatagtgccatctgag
caccatggattaaaatcctaacactcagattgacaccgtggttggttaaa
aaaggagattcaccttaaattcatcattagcaaggagtaattccactaaa
acagtaagatgattactaatagatctcacatgcttcgaaaccacattggg
ccaaaaaaaatattataatactctatatatatat
gaattcttgaccctatgttggcagaatatgtccattagtttctggagtaa
gggaattcttccccttcccatatcccttacattttccctgtttgtccatt
ttgtctcagtttgggatcttcaacaaataagcatgaagtgttagaaaagt
gatgaggcaatgggaaactactgtgtgaatggcaaagggggaaggcaaac
aaggctggttagtcattatcaatgcagactaactgtggacccatccctag
gctcacagaattccaaacagtcttcagggataacctttgttctctctggt
agaaagagcagaagtacctcttttatcttgttttgcaaagttgtgtgcta
cttttagaaaagtagaaaaaagaagatggcttttctgaatttgagtcatt
ccagttacctccagagcaaccaccctttttatttacatgtaacacagtct
gatacccggcagtacagacacttatattggagtagttcttttgtgatttt
atattcagactcttctgaatgaagctaaacaacagataatggaaaagccc
tcatctgattggaacctaggattatctaaacatcactgtaagaggaaggg
ctttgaaataatgtgatagcatgttgtcagcctcagaagactacaggcta
gagatacagctccatactactgcctgcagcagccctgagagtttgttaca
gagacctccactcagacagagctgggattctttgctataaaaaagaattt
tggaactgccattttgaagcagagttggggttgaataagatgaaagattt
taagttcgggatcaagaaaaaaagatggtgtccacccaagtgacagtgtg
catttctcaagagtgtcatactcaagtgattcagcaatagtgtacatgtg
tgtgtataaactacaaaaatactcatatatatgtaaatatatatattata
tatacatacgtatatatacacatatttctttgaagattctaaagtgtact
caacatgttgtaactaaccttttttcttttaccccacctcttctagtaag
aatcaaaggatggtccttagtgctttggacgattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89182846_89183991
seq2: B6Ng01-099L10.b_49_1182 (reverse)

seq1  --ATATATATA---TATTTT--TTTTTTTTTTTGCCCAATGTTTGGTTTT  43
        |||||||||   |||| |  | |||||||| ||||||||  |||||| 
seq2  ATATATATATAGAGTATTATAATATTTTTTTTGGCCCAATG--TGGTTT-  47

seq1  TCTGAAGCATGTGAGATCTATTTAGTTAATTCATCTTTACTGTTTTAAGT  93
         ||||||||||||||||| |||||  | ||||| |||||||||| |||
seq2  --CGAAGCATGTGAGATCTA-TTAGT--AATCATC-TTACTGTTTT-AGT  90

seq1  TGGGATTTACTTCCTTTTGCTTAATGATGAATTTAGGTTGAATCTCCTTT  143
        ||| ||||| |   |||| |||||||||||||| | ||||||||||||
seq2  --GGAATTACTCC---TTGC-TAATGATGAATTTAAGGTGAATCTCCTTT  134

seq1  TTTACCAAACCACGGTTGTCAATTCTGAGTGTTAGGATTTTTAATCCATG  193
      |||| | |||||||| |||||| |||||||||||||| ||||||||||||
seq2  TTTAACCAACCACGG-TGTCAA-TCTGAGTGTTAGGA-TTTTAATCCATG  181

seq1  GTGCTCAGATGGCACTATGGCCATCTG-AGATGATTTTTAAAGCTGTAAT  242
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  GTGCTCAGATGGCACTATGGCCATCTGAAGATGA-TTTTAAAGCTGTAAT  230

seq1  TTGGGTAGTACCATTTAGGAGATGGCCATAGAAGGCTTATAGAAGGAATT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTAGTACCATTTAGGAGATGGCCATAGAAGGCTTATAGAAGGAATT  280

seq1  ATTACATTTATGGATGAATAAATGGAAGCTCAGAATTGTGTGTGTCTTAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTTATGGATGAATAAATGGAAGCTCAGAATTGTGTGTGTCTTAA  330

seq1  GGAAGTGACAGCTATTTTTCTTCATTAAGATTGAAGCCTTAGCTCTCAAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGACAGCTATTTTTCTTCATTAAGATTGAAGCCTTAGCTCTCAAG  380

seq1  AGTTTGGAGTACTTATTTGTAGCATTAAGTTAATAGTTAAAAAAATTATA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGAGTACTTATTTGTAGCATTAAGTTAATAGTTAAAAAAATTATA  430

seq1  TGCATATAAGTCTGTGAGATCACATGTATGTATTTTGACCTGTGAATTGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATAAGTCTGTGAGATCACATGTATGTATTTTGACCTGTGAATTGT  480

seq1  TGCTAGTTGTAAGAAGAGAGTAATTTGCAGTATAAAAGAAATTGAGTTTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTTGTAAGAAGAGAGTAATTTGCAGTATAAAAGAAATTGAGTTTA  530

seq1  GGTTTGTGACTCAGTATTCCGTGTGCTTCCACTTATTGGATTTACATACT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTGACTCAGTATTCCGTGTGCTTCCACTTATTGGATTTACATACT  580

seq1  CTTAATATTTCTGATCACTATTTTTCTCTCTCACATTGAACAGGTTCTAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATATTTCTGATCACTATTTTTCTCTCTCACATTGAACAGGTTCTAG  630

seq1  GAAAACATTTTCCCTTATAATTGAGAAAGGGTTTATGTTTCTTTCTTTTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTTTCCCTTATAATTGAGAAAGGGTTTATGTTTCTTTCTTTTG  680

seq1  TATGCTTCACATATTCTCACTACACACCACTCTCGCCTTCCTTCCCTCTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTCACATATTCTCACTACACACCACTCTCGCCTTCCTTCCCTCTC  730

seq1  TCCTTTTCTTTCCTTCCTTCCTTTTTTTTTTTTTTAATTTGAATTTTGTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTTTCCTTCCTTCCTTTTTTTTTTTTTTAATTTGAATTTTGTT  780

seq1  TTTCCTTCTCAAGCTTCAGTAAATCAAGTCACACATTAGGTTAGAGTTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTCAAGCTTCAGTAAATCAAGTCACACATTAGGTTAGAGTTTT  830

seq1  AGCGTTTTGTCATGTCTTTTATATCTGTTGACTTTGAAAGTTATGATTGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTTTGTCATGTCTTTTATATCTGTTGACTTTGAAAGTTATGATTGT  880

seq1  GTTTTTTATTTCTGAAGACTACTCATTGAACATTACATAGCCCATATAGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTATTTCTGAAGACTACTCATTGAACATTACATAGCCCATATAGA  930

seq1  CTTGAACAGTTGGGTAGAAAAATCTTACTAGATAAATAACCTTTTAATGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACAGTTGGGTAGAAAAATCTTACTAGATAAATAACCTTTTAATGA  980

seq1  TGTGAAAACTAACAGTGGAAACAAATTACAAACAGAAGAAAGAGTACTCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAACTAACAGTGGAAACAAATTACAAACAGAAGAAAGAGTACTCT  1030

seq1  TAGAAATACTGTTTACTAATTTCAAAATATTTGTATTATTTTACAGGAAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATACTGTTTACTAATTTCAAAATATTTGTATTATTTTACAGGAAT  1080

seq1  GTTTAGGTGTCCAAAATGTCACTAAACCTGTGTCTTCACTTTGTAGTGGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGTGTCCAAAATGTCACTAAACCTGTGTCTTCACTTTGTAGTGGA  1130

seq1  ATTC  1146
      ||||
seq2  ATTC  1134

seq1: chr18_89074665_89075761
seq2: B6Ng01-099L10.g_69_1154

seq1  GAATTCTTGACCCTATGTTGGCAGAATATGTCCATTAGTTTCTGGAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACCCTATGTTGGCAGAATATGTCCATTAGTTTCTGGAGTAA  50

seq1  GGGAATTCTTCCCCTTCCCATATCCCTTACATTTTCCCTGTTTGTCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTCTTCCCCTTCCCATATCCCTTACATTTTCCCTGTTTGTCCATT  100

seq1  TTGTCTCAGTTTGGGATCTTCAACAAATAAGCATGAAGTGTTAGAAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAGTTTGGGATCTTCAACAAATAAGCATGAAGTGTTAGAAAAGT  150

seq1  GATGAGGCAATGGGAAACTACTGTGTGAATGGCAAAGGGGGAAGGCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGCAATGGGAAACTACTGTGTGAATGGCAAAGGGGGAAGGCAAAC  200

seq1  AAGGCTGGTTAGTCATTATCAATGCAGACTAACTGTGGACCCATCCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGGTTAGTCATTATCAATGCAGACTAACTGTGGACCCATCCCTAG  250

seq1  GCTCACAGAATTCCAAACAGTCTTCAGGGATAACCTTTGTTCTCTCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGAATTCCAAACAGTCTTCAGGGATAACCTTTGTTCTCTCTGGT  300

seq1  AGAAAGAGCAGAAGTACCTCTTTTATCTTGTTTTGCAAAGTTGTGTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGCAGAAGTACCTCTTTTATCTTGTTTTGCAAAGTTGTGTGCTA  350

seq1  CTTTTAGAAAAGTAGAAAAAAGAAGATGGCTTTTCTGAATTTGAGTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGAAAAGTAGAAAAAAGAAGATGGCTTTTCTGAATTTGAGTCATT  400

seq1  CCAGTTACCTCCAGAGCAACCACCCTTTTTATTTACATGTAACACAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTACCTCCAGAGCAACCACCCTTTTTATTTACATGTAACACAGTCT  450

seq1  GATACCCGGCAGTACAGACACTTATATTGGAGTAGTTCTTTTGTGATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCGGCAGTACAGACACTTATATTGGAGTAGTTCTTTTGTGATTTT  500

seq1  ATATTCAGACTCTTCTGAATGAAGCTAAACAACAGATAATGGAAAAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGACTCTTCTGAATGAAGCTAAACAACAGATAATGGAAAAGCCC  550

seq1  TCATCTGATTGGAACCTAGGATTATCTAAACATCACTGTAAGAGGAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGATTGGAACCTAGGATTATCTAAACATCACTGTAAGAGGAAGGG  600

seq1  CTTTGAAATAATGTGATAGCATGTTGTCAGCCTCAGAAGACTACAGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAATAATGTGATAGCATGTTGTCAGCCTCAGAAGACTACAGGCTA  650

seq1  GAGATACAGCTCCATACTACTGCCTGCAGCAGCCCTGAGAGTTTGTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACAGCTCCATACTACTGCCTGCAGCAGCCCTGAGAGTTTGTTACA  700

seq1  GAGACCTCCACTCAGACAGAGCTGGGATTCTTTGCTATAAAAAAGAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTCCACTCAGACAGAGCTGGGATTCTTTGCTATAAAAAAGAATTT  750

seq1  TGGAACTGCCATTTTGAAGCAGAGTTGGGGTTGAATAAGATGAAAGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGCCATTTTGAAGCAGAGTTGGGGTTGAATAAGATGAAAGATTT  800

seq1  TAAGTTCGGGATCAAGAAAAAAAGATGGTGTCCACCCAAGTGACAGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCGGGATCAAGAAAAAAAGATGGTGTCCACCCAAGTGACAGTGTG  850

seq1  CATTTCTCAAGAGTGTCATACTCAAGTGATTCAGCAATAGTGTACATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCAAGAGTGTCATACTCAAGTGATTCAGCAATAGTGTACATGTG  900

seq1  TGTGTATAAACTACAAAAATACTCATATATATGTAAATATATATA-TATA  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTGTATAAACTACAAAAATACTCATATATATGTAAATATATATATTATA  950

seq1  TATACATACGTATATATACACATATTTCTTTGTAGATTCTAAAGTTGTAT  999
      |||||||||||||||||||||||||||||||| ||||||||||| |||| 
seq2  TATACATACGTATATATACACATATTTCTTTGAAGATTCTAAAG-TGTA-  998

seq1  CTCAACATGTTGTAACTAACCTTTTTTTCTTTTTACCCCACCTCTTCTTA  1049
      |||||||||||||||||||||||||||   ||||||||||||||||| ||
seq2  CTCAACATGTTGTAACTAACCTTTTTT--CTTTTACCCCACCTCTTC-TA  1045

seq1  GTAAATGAGATCATAGGATGGTTCTTTAGGTGCTTTGGACAGGATTAC  1097
      ||||  || |||| |||||||| |||   |||||||||||  ||||||
seq2  GTAA--GA-ATCAAAGGATGGTCCTT--AGTGCTTTGGAC--GATTAC  1086