BAC Information

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BAC

Clone NameB6Ng01-099N07
Chromosome18 (Build37)
Map Location 38,673,846 - 38,837,529
singlet/doubletdoublet
Overlap geneSpry4, 9630014M24Rik
Upstream genePcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1
Downstream geneLOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26, Nr3c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099N07.bB6Ng01-099N07.g
ACCDH909514DH909515
length8351,107
definitionDH909514|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N07, 5' end.DH909515|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,836,694 - 38,837,529)(38,673,846 - 38,674,594)
sequence
gaattcttaatacggtaataactctttccagtcaggtgttgttttcttaa
tttctatggttctttttacattctagaagcaaaagtaaggtcataacgaa
ccgcagcaaagtctacgaataagaatgaaacaaagtttctactgcatgtc
ccagtcattctgagtcttagggatttttttccccctcttttttcctcccc
ccttgtggtgctaaggaatcaaaagccagggcgtcatacataaagaaaag
cactctaccactgagctccatccacagcactagggtcttctaaaatcata
tcaatattgtgtgtgtgcgtgtgcgtgtacgtgtgtgtgtgtgtgtgcgt
atgtgtgtgtgcgcgtgtgcatgtgtgtgtgtgcgcgtgtgcatgtgtgt
gtgtgtgttcgagagcgcacgcgcaggggaatgcacaccaggtgtggagt
tcccacttgtaatccctgtacataagagtcagaggctagaagcctgaaag
cagttcaaggacagcctggacttcatagcaacgctctttttcaaacataa
aacaaacactaactcacagtatgattgatagatttatagatttattactt
tttgtttcttgaaatcaggatcttattctgtggaattttgttttggcttt
gggattttccaaacttgggggaccaaatccagagcctcactcatgctagg
caaacaccccacagccttgccatatctgtagttttaaaacttctttattt
tgggctagagagatggctcagtggttagagcactggctggtcttccagag
gactgggttcaagtcccaacatgaacatagcagtt
gaattctgatgtagactgaagactctctgggaatcctctaggattctagt
gctagattgggacagctgcgagagccaccctcatggacccaacaactact
agagagtgtcaatctttccattatccaacagctgttgttggaccacctgg
accacagcctgtgagccagcctaataacccctatctatctatctgtctgt
ctgtctgtctgtctatctatctacctacctacctacctacctacctactt
acctatcatcaacacatctgtatctatctatgtatctaaatatagaaaga
tacatatatgtatctatatctatatgtatacaaatatggatggatggaga
gatagatagatagatagatatcgcagtatgtaggcctggatggcttagaa
atcactatgtaggcctggttggtcttgaacttacaaaaatcaacttgact
acacctcccaggtaccttcattaaaggtgtttgccaaaggtgcctggctt
gtcagagtattgtcattgtagcaatagaaaaagaaatgaagacattgtac
ttcctgagtgcagggattataggcatgcacaaccatgattggtttacatg
gtactgaggagctggtggtgcctttaatcccagcttgggaggcagagaca
ggtagatcgatgaggtggaggctagtctggtctacaaagcgagttctagg
acagccaaggctacacagaaaaaacctgtctaaaaagaaaaaataaaagg
aaagaaagaagagagagagagacagagagaaagagatagagaaagaaaga
gaaagagaaagagaaagagaggccactttctctggtaccatcttttcagc
ttctgggttcccccagtttctgatttcttccccttgtcagaagtttgtga
caaacattggaaaggatatttgaagaagttcccacacagtcctcattact
tactgacttttggagctaggtcaccaacttcttctcttttcctttcttca
aatcttccctgggagaaagcagctgttccagtccacgagatgggaaccac
aaagcctgacaagaggagcagatgcctgccctgctatctaaggtagactt
tcctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_38836694_38837529
seq2: B6Ng01-099N07.b_50_884 (reverse)

seq1  AACTGCTATGTGCATGTTGGGACTTGAACCCAGGTCCTCTGGAAGAGCAG  50
      ||||||||||| |||||||||||||||||||| ||||||||||||| |||
seq2  AACTGCTATGTTCATGTTGGGACTTGAACCCA-GTCCTCTGGAAGACCAG  49

seq1  CCAGTGCTCTTAACCACTGAGCCATCTCTCTAGCCCAAAAT-AAGAAGTT  99
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  CCAGTGCTC-TAACCACTGAGCCATCTCTCTAGCCCAAAATAAAGAAGTT  98

seq1  TTAAAACTACAGATATGGCAAGGCTGTGGGGTGTTTGCCTAGCATGAGTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTACAGATATGGCAAGGCTGTGGGGTGTTTGCCTAGCATGAGTG  148

seq1  AGGCTCTGGATTTGGTCCCCCAAGTTTGGAAAATCCCAAAGCCAAAACAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGGATTTGGTCCCCCAAGTTTGGAAAATCCCAAAGCCAAAACAA  198

seq1  AATTCCACAGAATAAGATCCTGATTTCAAGAAACAAAAAGTTATAAATCT  249
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATTCCACAGAATAAGATCCTGATTTCAAGAAACAAAAAGTAATAAATCT  248

seq1  ATAAATCTATCAATCATACTGTGAGTTAGTGTTTGTTTTATGTTTGAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTATCAATCATACTGTGAGTTAGTGTTTGTTTTATGTTTGAAAA  298

seq1  AGAGCGTTGCTATGAAGTCCAGGCTGTCCTTGAACTGCTTTCAGGCTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGTTGCTATGAAGTCCAGGCTGTCCTTGAACTGCTTTCAGGCTTCT  348

seq1  AGCCTCTGACTCTTATGTACAGGGATTACAAGTGGGAACTCCACACCTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGACTCTTATGTACAGGGATTACAAGTGGGAACTCCACACCTGG  398

seq1  TGTGCATTCCCCTGCGCGTGCGCTCTCGAACACACACACACACATGCACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTCCCCTGCGCGTGCGCTCTCGAACACACACACACACATGCACA  448

seq1  CGCGCACACACACACATGCACACGCGCACACACACATACGCACACACACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCACACACACACATGCACACGCGCACACACACATACGCACACACACA  498

seq1  CACACACGTACACGCACACGCACACACACAATATTGATATGATTTTAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACGTACACGCACACGCACACACACAATATTGATATGATTTTAGAA  548

seq1  GACCCTAGTGCTGTGGATGGAGCTCAGTGGTAGAGTGCTTTTCTTTATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTAGTGCTGTGGATGGAGCTCAGTGGTAGAGTGCTTTTCTTTATGT  598

seq1  ATGACGCCCTGGCTTTTGATTCCTTAGCACCACAAGGGGGGAGGAAAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGCCCTGGCTTTTGATTCCTTAGCACCACAAGGGGGGAGGAAAAAA  648

seq1  GAGGGGGAAAAAAATCCCTAAGACTCAGAATGACTGGGACATGCAGTAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGAAAAAAATCCCTAAGACTCAGAATGACTGGGACATGCAGTAGA  698

seq1  AACTTTGTTTCATTCTTATTCGTAGACTTTGCTGCGGTTCGTTATGACCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTTTCATTCTTATTCGTAGACTTTGCTGCGGTTCGTTATGACCT  748

seq1  TACTTTTGCTTCTAGAATGTAAAAAGAACCATAGAAATTAAGAAAACAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGCTTCTAGAATGTAAAAAGAACCATAGAAATTAAGAAAACAAC  798

seq1  ACCTGACTGGAAAGAGTTATTACCGTATTAAGAATTC  836
      |||||||||||||||||||||||||||||||||||||
seq2  ACCTGACTGGAAAGAGTTATTACCGTATTAAGAATTC  835

seq1: chr18_38673846_38674594
seq2: B6Ng01-099N07.g_433_1174

seq1  AGATATCTCACTATGTAGGCCTGGATGTCTTAGAAATCACTATGTAGGCC  50
      ||||||| || |||||||||||||||| ||||||||||||||||||||||
seq2  AGATATCGCAGTATGTAGGCCTGGATGGCTTAGAAATCACTATGTAGGCC  50

seq1  TGGTTGGTCTTGAACTTACAAAAATCAACTTGACTACACCTCCCAGGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTCTTGAACTTACAAAAATCAACTTGACTACACCTCCCAGGTAC  100

seq1  CTTCATTAAAGGTGTTTGCCAAAGGTGCCTGGCTTGTCAGAGTATTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTAAAGGTGTTTGCCAAAGGTGCCTGGCTTGTCAGAGTATTGTCA  150

seq1  TTGTAGCAATAGAAAAAGAAATGAAGACATTGTACTTCCTGAGTGCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCAATAGAAAAAGAAATGAAGACATTGTACTTCCTGAGTGCAGGG  200

seq1  ATTATAGGCATGCACAACCATGATTGGTTTACATGGTACTGAGGAGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGGCATGCACAACCATGATTGGTTTACATGGTACTGAGGAGCTGG  250

seq1  TGGTGCCTTTAATCCCAGCTTGGGAGGCAGAGACAGGTAGATCGATGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCTTTAATCCCAGCTTGGGAGGCAGAGACAGGTAGATCGATGAGG  300

seq1  TGGAGGCTAGTCTGGTCTACAAAGCGAGTTCTAGGACAGCCAAGGCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTAGTCTGGTCTACAAAGCGAGTTCTAGGACAGCCAAGGCTACA  350

seq1  CAGAAAAAACCTGTCTAAAAAGAAAAAA-AAAAGGAAAGAAAGAAGAGAG  399
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGAAAAAACCTGTCTAAAAAGAAAAAATAAAAGGAAAGAAAGAAGAGAG  400

seq1  AGAGAGACAGAGAGAAAGAGAAAGAGAAAGAAAGAGAAAGAGAAAGAGAA  449
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAGAGACAGAGAGAAAGAGATAGAGAAAGAAAGAGAAAGAGAAAGAGAA  450

seq1  AGAGAGGCCACTTTCTCTGGTACCATCTTTCCAGCTTCTGGGTTCCCCCA  499
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  AGAGAGGCCACTTTCTCTGGTACCATCTTTTCAGCTTCTGGGTTCCCCC-  499

seq1  AGTTTCTGATTTCTTCCCCTTGTCAGAAGTTTGTGACAGACAGTGGAAAG  549
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  AGTTTCTGATTTCTTCCCCTTGTCAGAAGTTTGTGACAAACATTGGAAAG  549

seq1  GATATTTG-AGAAGGTCCCACACAGTCTCCATTACTTACTGACTTTTGGA  598
      |||||||| ||||| ||||||||||||  |||||||||||||||||||||
seq2  GATATTTGAAGAAGTTCCCACACAGTCCTCATTACTTACTGACTTTTGGA  599

seq1  GCTAGGTCACCAACTACTTCTCTTTCCCTATCTTCAAATCTACCCTGGGA  648
      ||||||||||||||| ||||||||| ||| ||||||||||| ||||||||
seq2  GCTAGGTCACCAACTTCTTCTCTTTTCCTTTCTTCAAATCTTCCCTGGGA  649

seq1  GAAAGCAGCTGTTCACAGCCCACAGAGATGGGAAACCAGCAAAGCCTGAC  698
      |||||||||||||| ||| |||| |||||||| ||||| |||||||||||
seq2  GAAAGCAGCTGTTC-CAGTCCAC-GAGATGGG-AACCA-CAAAGCCTGAC  695

seq1  AGAGAGGAAGCAGATGCCCGGCCCTGCTTCCCAGAGGGTAGAC-TTCCTG  747
      | ||||| |||||||| || ||||||||  |   | ||||||| ||||||
seq2  A-AGAGG-AGCAGATG-CCTGCCCTGCTATC--TAAGGTAGACTTTCCTG  740

seq1  GT  749
       |
seq2  TT  742