BAC Information

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BAC

Clone NameB6Ng01-100O17
Chromosome18 (Build37)
Map Location 28,014,987 - 28,183,889
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665977, EG665646
Downstream geneEG271505, EG625997, BC051408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100O17.bB6Ng01-100O17.g
ACCDH910271DH910272
length1,136982
definitionDH910271|Mus musculus domesticus DNA, BAC clone: B6Ng01-100O17, 5' end.DH910272|Mus musculus domesticus DNA, BAC clone: B6Ng01-100O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,014,987 - 28,016,139)(28,183,311 - 28,183,889)
sequence
gaattcaggtttccccaaataacatgtcccactgtggaaatggttacaaa
aacattttgtagtaagagaacaaaagtaagccattaatcaaggctttccc
taagtacattggttgaaacacaagaccaatcaatgcattacagaaaagct
ggaaaaatctcttctataggatgctgatgctaggctttggcttgttgata
ggtagtggcttattaggtaaacacattcaagtgattttaaaagatgctca
ctaggtgttaagtctgaagctgggcactgaatggtttttaaagaaattta
agacagatgataaaaatttggcttttggtgtgaaacatcctgactttcca
cagtcaagtgctagtcagtcatttagatattcaaaactctccacagagtt
gttcttacagtccatggccttcagttcatgtaagcatgtctgtgtatatt
gggatctgacataacaatgttctttctggtcctgaaccacaattaagaca
acattaatttctttttattgtttctgatttttaactgcatgtcaagagct
gaataaattcaagtgcaaactggaatctccttccaaattattttaggatc
actaagcaagaactttctaccaactgagaactgtggctcacaataagtca
attagcttttcttacagataaatttaccttctccacatgtttacatccag
tgatcttcctcatttgttactcagattataactggaaacattgacactga
gcttcataacacccccttcttggccttttagggaccacgtcctatttcct
tttagtgaacatctcatcatgagaaattagaatttttttaaaatttttgc
catttagcatagggaattttgaatgccttagtaatcattttcaataccat
tatatcagagaatttaggaatctcttagaattgttgatttctggacatca
cattctactggtttgtactggattttcattgatactaactactgactagc
aagcaatattttcataaacatgctttatggaaaagtacataatagtagta
aattaccgagtctcattcttccctcttcgtaacactctgcattccttggc
attgctaaggcacttctttttcttgtgttaaagaca
gaattcaacagaagatattaaatgatggccttcataagcaagaaatgaac
agctagagacattatttgagagatccatacatataggcttctatatttta
aaacctaatttaataagcattcttaaatgctttaacctccattctagccc
accacccaccagagacagtggaaaggaaaggtaaatatggcaatggggga
tgtggacttgtttagaaatagttctttgggtgattccaatctttattgtc
aggttataagcaattcagttcacagaaataagcaatggtagctctatcca
tttgcaagaactgttccaaaaatctgcaatggcagttagatccagaagaa
acaatgaagcgcttccaatcatcccgagtctgtcagaagtggcaagaaga
ctcaggaatatcttaagaagttctttcattgctcctttctattaattcct
aacaaataataattagagaagaaggcaaggcaaagcaatgctatagtgtt
atcagggaagacaagtgtcagtaacatccaatggagaccaacaaagaata
gcacggtgaaccaatgacagaacatggtccactgtctgctgggaaatcct
gataccctttacaaacatcacatgttctcttaagcattcactcgagcaaa
acattacataccccctttccaggcagcttccagaaaaacagcacgtatct
cttaaaggcaaaacataattttagctgtcctcttcagcaaagcatcttct
tacaaatcttctataagacagtttccagaaaaaacatcatatatcataac
tgagtctccaaggaacccaggactgtccacttcacatacagggataacct
ccttccccttctcaaagaccaacaatctaccttagtgagggctcatccct
cagccattcctcttattaagcagttatcacatttgtatatttagatctca
aattccaatactaaaacatagaaaactaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_28014987_28016139
seq2: B6Ng01-100O17.b_48_1183

seq1  GAATTCAGGTTTCCCCAAATAACATGTCCCACTGTGGAAATGGTTACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTTCCCCAAATAACATGTCCCACTGTGGAAATGGTTACAAA  50

seq1  AACATTTTGTAGTAAGAGAACAAAAGTAAGCCATTAATCAAGGCTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTGTAGTAAGAGAACAAAAGTAAGCCATTAATCAAGGCTTTCCC  100

seq1  TAAGTACATTGGTTGAAACACAAGACCAATCAATGCATTACAGAAAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACATTGGTTGAAACACAAGACCAATCAATGCATTACAGAAAAGCT  150

seq1  GGAAAAATCTCTTCTATAGGATGCTGATGCTAGGCTTTGGCTTGTTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATCTCTTCTATAGGATGCTGATGCTAGGCTTTGGCTTGTTGATA  200

seq1  GGTAGTGGCTTATTAGGTAAACACATTCAAGTGATTTTAAAAGATGCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGGCTTATTAGGTAAACACATTCAAGTGATTTTAAAAGATGCTCA  250

seq1  CTAGGTGTTAAGTCTGAAGCTGGGCACTGAATGGTTTTTAAAGAAATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGTTAAGTCTGAAGCTGGGCACTGAATGGTTTTTAAAGAAATTTA  300

seq1  AGACAGATGATAAAAATTTGGCTTTTGGTGTGAAACATCCTGACTTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATGATAAAAATTTGGCTTTTGGTGTGAAACATCCTGACTTTCCA  350

seq1  CAGTCAAGTGCTAGTCAGTCATTTAGATATTCAAAACTCTCCACAGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAGTGCTAGTCAGTCATTTAGATATTCAAAACTCTCCACAGAGTT  400

seq1  GTTCTTACAGTCCATGGCCTTCAGTTCATGTAAGCATGTCTGTGTATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTACAGTCCATGGCCTTCAGTTCATGTAAGCATGTCTGTGTATATT  450

seq1  GGGATCTGACATAACAATGTTCTTTCTGGTCCTGAACCACAATTAAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTGACATAACAATGTTCTTTCTGGTCCTGAACCACAATTAAGACA  500

seq1  ACATTAATTTCTTTTTATTGTTTCTGATTTTTAACTGCATGTCAAGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATTTCTTTTTATTGTTTCTGATTTTTAACTGCATGTCAAGAGCT  550

seq1  GAATAAATTCAAGTGCAAACTGGAATCTCCTTCCAAATTATTTTAGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATTCAAGTGCAAACTGGAATCTCCTTCCAAATTATTTTAGGATC  600

seq1  ACTAAGCAAGAACTTTCTACCAACTGAGAACTGTGGCTCACAATAAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCAAGAACTTTCTACCAACTGAGAACTGTGGCTCACAATAAGTCA  650

seq1  ATTAGCTTTTCTTACAGATAAATTTACCTTCTCCACATGTTTACATCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTTTTCTTACAGATAAATTTACCTTCTCCACATGTTTACATCCAG  700

seq1  TGATCTTCCTCATTTGTTACTCAGATTATAACTGGAAACATTGACACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTCCTCATTTGTTACTCAGATTATAACTGGAAACATTGACACTGA  750

seq1  GCTTCATAACACCCCCTTCTTGGCCTTTTAGGGACCACGTCCTATTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATAACACCCCCTTCTTGGCCTTTTAGGGACCACGTCCTATTTCCT  800

seq1  TTTAGTGAACATCTCATCATGAGAAATTAGAATTTTTTTAAAATTTTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGAACATCTCATCATGAGAAATTAGAATTTTTTTAAAATTTTTGC  850

seq1  CATTTAGCATAGGGAATTTTGAATGCCTTAGTAATCATTTTCAATACCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGCATAGGGAATTTTGAATGCCTTAGTAATCATTTTCAATACCAT  900

seq1  TATATCAGAGAATTTAGGAATCTCTTAGAATTGTTGATTTCTGGACATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAGAGAATTTAGGAATCTCTTAGAATTGTTGATTTCTGGACATCA  950

seq1  CATTTCTACTGGTTTGTAACTGGATTTTTCATTGATTACTAACTACTGAC  1000
      || |||||||||||||| |||||| |||||||||| ||||||||||||||
seq2  CA-TTCTACTGGTTTGT-ACTGGA-TTTTCATTGA-TACTAACTACTGAC  996

seq1  TAGCAAGCACATA-TTTCATAAACATGC-TTATGGAAAAGTACATAATAG  1048
      ||||||||| ||| |||||||||||||| |||||||||||||||||||||
seq2  TAGCAAGCA-ATATTTTCATAAACATGCTTTATGGAAAAGTACATAATAG  1045

seq1  TAAGTAAATTACCGAGTCTCCAATTTTCTTTCTCTCTTTCTTTTAACAAC  1098
      | ||||||||||||||||||  |||    ||| ||||   |  |||| ||
seq2  T-AGTAAATTACCGAGTCTC--ATT---CTTCCCTCT---TCGTAAC-AC  1085

seq1  TCTGCATTCCCTTTGCACTGCTCATGGGCACTTTCTTTTTCTTGTGTATA  1148
      |||||||| |||| ||| |||| |  ||||| |||||||||||||||  |
seq2  TCTGCATT-CCTTGGCATTGCTAA--GGCAC-TTCTTTTTCTTGTGTTAA  1131

seq1  AGACA  1153
      |||||
seq2  AGACA  1136

seq1: chr18_28183311_28183889
seq2: B6Ng01-100O17.g_71_649 (reverse)

seq1  GACCATGTTCTGTCATTGGTTCACCGTGCTATTCTTTGTTGGTCTCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGTTCTGTCATTGGTTCACCGTGCTATTCTTTGTTGGTCTCCATT  50

seq1  GGATGTTACTGACACTTGTCTTCCCTGATAACACTATAGCATTGCTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTACTGACACTTGTCTTCCCTGATAACACTATAGCATTGCTTTGC  100

seq1  CTTGCCTTCTTCTCTAATTATTATTTGTTAGGAATTAATAGAAAGGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTCTTCTCTAATTATTATTTGTTAGGAATTAATAGAAAGGAGCA  150

seq1  ATGAAAGAACTTCTTAAGATATTCCTGAGTCTTCTTGCCACTTCTGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAACTTCTTAAGATATTCCTGAGTCTTCTTGCCACTTCTGACAG  200

seq1  ACTCGGGATGATTGGAAGCGCTTCATTGTTTCTTCTGGATCTAACTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGATGATTGGAAGCGCTTCATTGTTTCTTCTGGATCTAACTGCCA  250

seq1  TTGCAGATTTTTGGAACAGTTCTTGCAAATGGATAGAGCTACCATTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATTTTTGGAACAGTTCTTGCAAATGGATAGAGCTACCATTGCTT  300

seq1  ATTTCTGTGAACTGAATTGCTTATAACCTGACAATAAAGATTGGAATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTGAACTGAATTGCTTATAACCTGACAATAAAGATTGGAATCAC  350

seq1  CCAAAGAACTATTTCTAAACAAGTCCACATCCCCCATTGCCATATTTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAACTATTTCTAAACAAGTCCACATCCCCCATTGCCATATTTACC  400

seq1  TTTCCTTTCCACTGTCTCTGGTGGGTGGTGGGCTAGAATGGAGGTTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCCACTGTCTCTGGTGGGTGGTGGGCTAGAATGGAGGTTAAAG  450

seq1  CATTTAAGAATGCTTATTAAATTAGGTTTTAAAATATAGAAGCCTATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAGAATGCTTATTAAATTAGGTTTTAAAATATAGAAGCCTATATG  500

seq1  TATGGATCTCTCAAATAATGTCTCTAGCTGTTCATTTCTTGCTTATGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATCTCTCAAATAATGTCTCTAGCTGTTCATTTCTTGCTTATGAAG  550

seq1  GCCATCATTTAATATCTTCTGTTGAATTC  579
      |||||||||||||||||||||||||||||
seq2  GCCATCATTTAATATCTTCTGTTGAATTC  579