BAC Information

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BAC

Clone NameB6Ng01-101M05
Chromosome18 (Build37)
Map Location 51,679,770 - 51,838,802
singlet/doubletdoublet
Overlap genenone
Upstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt, Srfbp1, Lox, Zfp474, 1700034E13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101M05.bB6Ng01-101M05.g
ACCDH910845DH910846
length9101,059
definitionDH910845|Mus musculus domesticus DNA, BAC clone: B6Ng01-101M05, 5' end.DH910846|Mus musculus domesticus DNA, BAC clone: B6Ng01-101M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,679,770 - 51,680,506)(51,837,729 - 51,838,802)
sequence
gaattctttgtttagctctgtaccccattttttaataggggataggatgt
ctcttatggcaactcatcacgcatattaaagtagatgtgcccatgagctc
accaaattttgaattaatttttctgtattgcattaggcattgcagaaaca
gaaggaatattcagaaaagcttttgttcttaatgtgatattgcagtgtaa
aatataaaaatacaacacacatttaaaaaaataatttcctttattgatat
aaaatttgtctcatgtattatattctgtattacaggttttcctttatcta
ttcctctacgttcctcccacctcccttctcattcagattcaccaactttc
tgtctctcattagaaaacaaacagccttgtaagggataatgagaaaataa
aatatacaaaaaccaaacacattgtaataaacaaaagcaaacacacacaa
agaaaacaaaatgaaacaaaacaaaacaaaacaaacatcaaaacaaaacc
acagaatgaagagagccttaaaaatggtacaagaaattgatatggattca
gagaccctctcttgtccatgcttagcaatcctataggaacattaaactgt
aagtcatgttatataaacaatctgtaagttaaaaaatagaaaaaacaaaa
aattaataacaataagataaaattaaaaagacaaaacaaaatttgagatg
acattatgagacaaggaacatccaaagatgcctttgagtttgttttctct
tgaacaactactgctgtgtgcacagcctactcttaagagtagtttgtgtg
tacagtgagactcccttggagaaaactacattttcatttgtaagtgatta
tcagttggagacatcctctgagttagggatgagagcatgtgttcccttct
cctttcagct
gaattcttgccagcgagatactagcttgggcaagaagaggaagaagtttt
tattgcaggtattatcattccctaggcaggagattctgaattgtatattt
tcctattttaatgctcatctgaattttccatggaagaaatcattatcccc
tcactggaatatcaaatatttcttctgtgcttcataaaatcattcaaata
ctccatcacttcatggctatgtttctgctgggttagaccaccacctaact
ttaaaatctgatagctttattactgggatatatgtttatattgcggtcat
tgaatattttagtgtaaagttaagaacatcctgtgctctaagtccatatt
ctctcttggtctttttcatttagattttctcttttttgaaaccttgatag
agatgtattttattaggaagcatatcatatcttcaataacatgtttgtag
atacatgttaaaactgtaatttacttttttgaaagatctccaatctaaac
ataagaagctgatttaaaaatgttgtataaacattttactcatacacaca
tgacagtctgggaggaacttaaatccactcaattaacaaaattaacagtt
catctttgaagcaaaaatctttttatcatagtctaaatatacatctacaa
atgcttcactgctgtactcatggacaacgtacactcctattaaaccttta
accttcctgatgaggagctagcttataaaacacaaagtctctgacattgg
taataggtcatcttttgtatgctagtcttggtttcttggttttgtctttt
ccacctgctttccaaatagctcactccatatatatatgtgtgtgtgtgtg
tgtgtgtgtttacatatatgcatatatggacatatatgtataataatctt
gtatatcatatttccggggaaaattatttcatatacatatcaatgaataa
tgataaaaccaaataatagtacttctatgtgggaattgcagctgtcttca
gtcagctaaggttgaactccaagggtataatcacttcttgatcagtagta
ggtccctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51679770_51680506
seq2: B6Ng01-101M05.b_45_781

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTTAATAGGGGATAGGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTTAATAGGGGATAGGATGT  50

seq1  CTCTTATGGCAACTCATCACGCATATTAAAGTAGATGTGCCCATGAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATGGCAACTCATCACGCATATTAAAGTAGATGTGCCCATGAGCTC  100

seq1  ACCAAATTTTGAATTAATTTTTCTGTATTGCATTAGGCATTGCAGAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATTTTGAATTAATTTTTCTGTATTGCATTAGGCATTGCAGAAACA  150

seq1  GAAGGAATATTCAGAAAAGCTTTTGTTCTTAATGTGATATTGCAGTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATATTCAGAAAAGCTTTTGTTCTTAATGTGATATTGCAGTGTAA  200

seq1  AATATAAAAATACAACACACATTTAAAAAAATAATTTCCTTTATTGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAATACAACACACATTTAAAAAAATAATTTCCTTTATTGATAT  250

seq1  AAAATTTGTCTCATGTATTATATTCTGTATTACAGGTTTTCCTTTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGTCTCATGTATTATATTCTGTATTACAGGTTTTCCTTTATCTA  300

seq1  TTCCTCTACGTTCCTCCCACCTCCCTTCTCATTCAGATTCACCAACTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTACGTTCCTCCCACCTCCCTTCTCATTCAGATTCACCAACTTTC  350

seq1  TGTCTCTCATTAGAAAACAAACAGCCTTGTAAGGGATAATGAGAAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCATTAGAAAACAAACAGCCTTGTAAGGGATAATGAGAAAATAA  400

seq1  AATATACAAAAACCAAACACATTGTAATAAACAAAAGCAAACACACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAAAAACCAAACACATTGTAATAAACAAAAGCAAACACACACAA  450

seq1  AGAAAACAAAATGAAACAAAACAAAACAAAACAAACATCAAAACAAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAAAATGAAACAAAACAAAACAAAACAAACATCAAAACAAAACC  500

seq1  ACAGAATGAAGAGAGCCTTAAAAATGGTACAAGAAATTGATATGGATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGAAGAGAGCCTTAAAAATGGTACAAGAAATTGATATGGATTCA  550

seq1  GAGACCCTCTCTTGTCCATGCTTAGCAATCCTATAGGAACATTAAACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTCTCTTGTCCATGCTTAGCAATCCTATAGGAACATTAAACTGT  600

seq1  AAGTCATGTTATATAAACAATCTGTAAGTTAAAAAATAGAAAAAACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATGTTATATAAACAATCTGTAAGTTAAAAAATAGAAAAAACAAAA  650

seq1  AATTAATAACAATAAGATAAAATTAAAAAGACAAAACAAAATTTGAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATAACAATAAGATAAAATTAAAAAGACAAAACAAAATTTGAGATG  700

seq1  ACATTATGAGACAAGGAACATCCAAAGATGCCTTTGA  737
      |||||||||||||||||||||||||||||||||||||
seq2  ACATTATGAGACAAGGAACATCCAAAGATGCCTTTGA  737

seq1: chr18_51837729_51838802
seq2: B6Ng01-101M05.g_71_1129 (reverse)

seq1  TGAGGGACCTCCTACTGTGTCATGAAGGTGAATTATCACCACTGGGGTTC  50
      |||||||||| ||||||  ||| ||| ||| ||||| |||  ||| ||||
seq2  TGAGGGACCTACTACTG-ATCAAGAA-GTG-ATTAT-ACCCTTGGAGTTC  46

seq1  AAACCTTAGCTTGACTGGAGACCAGCCTGCAATTCCCCACATAGAAGTAC  100
       ||||||||| |||||| ||| ||| |||||||| |||||||||||||||
seq2  -AACCTTAGC-TGACTGAAGA-CAG-CTGCAATT-CCCACATAGAAGTAC  91

seq1  TAATTATTTTGGTTTTATCATTATTCATTGATATGTATATGAAATTAACT  150
      | |||| |||||||||||||||||||||||||||||||||||||| |   
seq2  T-ATTA-TTTGGTTTTATCATTATTCATTGATATGTATATGAAATAA---  136

seq1  TCTTCCCTGGAAATATGATATACAAGTATCATATACATATATGTACATAT  200
      | ||||| ||||||||||||||||||  |  ||||||||||||| |||||
seq2  TTTTCCCCGGAAATATGATATACAAGATTATTATACATATATGTCCATAT  186

seq1  ATGCATATATGTAAACACACACACACACACACACACATATATATATGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATATGTAAACACACACACACACACACACACATATATATATGGAG  236

seq1  TGAGCTATTTGGTAAAGCAGGTGGAAAAGACAAAACCAAGAAACCAAGAC  300
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATTTGG-AAAGCAGGTGGAAAAGACAAAACCAAGAAACCAAGAC  285

seq1  TAGCATACAAAAGATGACCTATTACCAATGTCAGAGACTTTGTGTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATACAAAAGATGACCTATTACCAATGTCAGAGACTTTGTGTTTTAT  335

seq1  AAGCTAGCTCCTCATCAGGAAGGTTAAAGGTTTAATAGGAGTGTACGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGCTCCTCATCAGGAAGGTTAAAGGTTTAATAGGAGTGTACGTTG  385

seq1  TCCATGAGTACAGCAGTGAAGCATTTGTAGATGTATATTTAGACTATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGTACAGCAGTGAAGCATTTGTAGATGTATATTTAGACTATGAT  435

seq1  AAAAAGATTTTTGCTTCAAAGATGAACTGTTAATTTTGTTAATTGAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATTTTTGCTTCAAAGATGAACTGTTAATTTTGTTAATTGAGTGG  485

seq1  ATTTAAGTTCCTCCCAGACTGTCATGTGTGTATGAGTAAAATGTTTATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGTTCCTCCCAGACTGTCATGTGTGTATGAGTAAAATGTTTATAC  535

seq1  AACATTTTTAAATCAGCTTCTTATGTTTAGATTGGAGATCTTTCAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTAAATCAGCTTCTTATGTTTAGATTGGAGATCTTTCAAAAAA  585

seq1  GTAAATTACAGTTTTAACATGTATCTACAAACATGTTATTGAAGATATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTACAGTTTTAACATGTATCTACAAACATGTTATTGAAGATATGA  635

seq1  TATGCTTCCTAATAAAATACATCTCTATCAAGGTTTCAAAAAAGAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTCCTAATAAAATACATCTCTATCAAGGTTTCAAAAAAGAGAAAA  685

seq1  TCTAAATGAAAAAGACCAAGAGAGAATATGGACTTAGAGCACAGGATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGAAAAAGACCAAGAGAGAATATGGACTTAGAGCACAGGATGTT  735

seq1  CTTAACTTTACACTAAAATATTCAATGACCGCAATATAAACATATATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTTTACACTAAAATATTCAATGACCGCAATATAAACATATATCCC  785

seq1  AGTAATAAAGCTATCAGATTTTAAAGTTAGGTGGTGGTCTAACCCAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAAAGCTATCAGATTTTAAAGTTAGGTGGTGGTCTAACCCAGCAG  835

seq1  AAACATAGCCATGAAGTGATGGAGTATTTGAATGATTTTATGAAGCACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGCCATGAAGTGATGGAGTATTTGAATGATTTTATGAAGCACAG  885

seq1  AAGAAATATTTGATATTCCAGTGAGGGGATAATGATTTCTTCCATGGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATTTGATATTCCAGTGAGGGGATAATGATTTCTTCCATGGAAA  935

seq1  ATTCAGATGAGCATTAAAATAGGAAAATATACAATTCAGAATCTCCTGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATGAGCATTAAAATAGGAAAATATACAATTCAGAATCTCCTGCC  985

seq1  TAGGGAATGATAATACCTGCAATAAAAACTTCTTCCTCTTCTTGCCCAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAATGATAATACCTGCAATAAAAACTTCTTCCTCTTCTTGCCCAAG  1035

seq1  CTAGTATCTCGCTGGCAAGAATTC  1074
      ||||||||||||||||||||||||
seq2  CTAGTATCTCGCTGGCAAGAATTC  1059