BAC Information

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BAC

Clone NameB6Ng01-103L11
Chromosome18 (Build37)
Map Location 61,020,938 - 61,149,043
singlet/doubletdoublet
Overlap geneLOC100042699, Arsi, Camk2a
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1
Downstream geneSlc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103L11.bB6Ng01-103L11.g
ACCDH912220DH912221
length764450
definitionDH912220|Mus musculus domesticus DNA, BAC clone: B6Ng01-103L11, 5' end.DH912221|Mus musculus domesticus DNA, BAC clone: B6Ng01-103L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,148,280 - 61,149,043)(61,020,938 - 61,021,393)
sequence
gaattcaaatgccctcatgagatcaactggaccctgcacgaactctgcta
ggacacgtgcctgcaacccactcgtgttccgccacctgctggtgagaatc
tgcaatggcagcctaaataagctctcaagcccctctgcactgctcaggtg
cctggggctagggatgcagagctgaaacaatatttttgtgctctcatgct
ctaggcctgtactctcgctgtgaagattcttagctatgtgcaaggggaac
attcctcttagaccctccatttgactaccccatataccatcagtaaggac
agctctagaaagcagtcaatcagggactctggggtaccagcacaagaaac
acactttaagaggaactgtggatgccaacggacaatccccctggccccat
aaaatccaggtcttttgagaagaaggaatcctggcttagtatggccgatt
catctggtttacctgagattatcctatttctttagttgtttttgtttgtt
tggtttttgagactgggtttctctgtgtagccctggctgtcctagaactc
gctctgtacatcaggctggcctcaaactcagtgatccatctgcctctgcc
tctgcctcccaagtactgggctgaaaggcgtgcaccacccttgcccagct
gactgtcctagatttagcacggaaaatctcaggtcaacatctgggcagtc
tcaagcaaaagcaaaccagaggagtttgctggtctctactgtgtgtgtgt
gtgggggggggggg
atgttcaccccacatcatgtttgaaactgatctgtgatgatgcacagagc
tctgttgagttatttattcctaatatctagttgattgcattgtgagtgag
gcaaagcttattaatccattctcctgtgggtgagcattgaagtcattttt
taacttcccacaatgaacctcagtcgggtgctcttacccactgagccatc
tcaccagccccaacttcccacaatgaaaaccactctgcagtgactactgt
tcctgtgagtcttgcctgggcctggaggggacttagtgtgaatgcccttg
ggttattcccatggctcagcttccacagtgctgggattaaaggcatgtgc
cacaactgcccacctactgctggtcttttgatgcacaaaatattagtgta
ttcatatgtgtgcacaaagtattagtgtcttcatatatgtgtgtgtgtgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_61148280_61149043
seq2: B6Ng01-103L11.b_46_809 (reverse)

seq1  CCCCCCCCCCCCACACACACACACAGTAGAGACCAGCAAACTCCTCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCACACACACACACAGTAGAGACCAGCAAACTCCTCTGGT  50

seq1  TTGCTTTTGCTTGAGACTGCCCAGATGTTGACCTGAGATTTTCCGTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTGCTTGAGACTGCCCAGATGTTGACCTGAGATTTTCCGTGCTA  100

seq1  AATCTAGGACAGTCAGCTGGGCAAGGGTGGTGCACGCCTTTCAGCCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGGACAGTCAGCTGGGCAAGGGTGGTGCACGCCTTTCAGCCCAGT  150

seq1  ACTTGGGAGGCAGAGGCAGAGGCAGATGGATCACTGAGTTTGAGGCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGGCAGAGGCAGAGGCAGATGGATCACTGAGTTTGAGGCCAGC  200

seq1  CTGATGTACAGAGCGAGTTCTAGGACAGCCAGGGCTACACAGAGAAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTACAGAGCGAGTTCTAGGACAGCCAGGGCTACACAGAGAAACCC  250

seq1  AGTCTCAAAAACCAAACAAACAAAAACAACTAAAGAAATAGGATAATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAAAACCAAACAAACAAAAACAACTAAAGAAATAGGATAATCTC  300

seq1  AGGTAAACCAGATGAATCGGCCATACTAAGCCAGGATTCCTTCTTCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAACCAGATGAATCGGCCATACTAAGCCAGGATTCCTTCTTCTCAA  350

seq1  AAGACCTGGATTTTATGGGGCCAGGGGGATTGTCCGTTGGCATCCACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTGGATTTTATGGGGCCAGGGGGATTGTCCGTTGGCATCCACAGT  400

seq1  TCCTCTTAAAGTGTGTTTCTTGTGCTGGTACCCCAGAGTCCCTGATTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTAAAGTGTGTTTCTTGTGCTGGTACCCCAGAGTCCCTGATTGAC  450

seq1  TGCTTTCTAGAGCTGTCCTTACTGATGGTATATGGGGTAGTCAAATGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTAGAGCTGTCCTTACTGATGGTATATGGGGTAGTCAAATGGAG  500

seq1  GGTCTAAGAGGAATGTTCCCCTTGCACATAGCTAAGAATCTTCACAGCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAGAGGAATGTTCCCCTTGCACATAGCTAAGAATCTTCACAGCGA  550

seq1  GAGTACAGGCCTAGAGCATGAGAGCACAAAAATATTGTTTCAGCTCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAGGCCTAGAGCATGAGAGCACAAAAATATTGTTTCAGCTCTGCA  600

seq1  TCCCTAGCCCCAGGCACCTGAGCAGTGCAGAGGGGCTTGAGAGCTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGCCCCAGGCACCTGAGCAGTGCAGAGGGGCTTGAGAGCTTATTT  650

seq1  AGGCTGCCATTGCAGATTCTCACCAGCAGGTGGCGGAACACGAGTGGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCCATTGCAGATTCTCACCAGCAGGTGGCGGAACACGAGTGGGTT  700

seq1  GCAGGCACGTGTCCTAGCAGAGTTCGTGCAGGGTCCAGTTGATCTCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCACGTGTCCTAGCAGAGTTCGTGCAGGGTCCAGTTGATCTCATGA  750

seq1  GGGCATTTGAATTC  764
      ||||||||||||||
seq2  GGGCATTTGAATTC  764

seq1: chr18_61020938_61021393
seq2: B6Ng01-103L11.g_65_520

seq1  GAATTCATGTTCACCCCACATCATGTTTGAAACTGATCTGTGATGATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTCACCCCACATCATGTTTGAAACTGATCTGTGATGATGCA  50

seq1  CAGAGCTCTGTTGAGTTATTTATTCCTAATATCTAGTTGATTGCATTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCTGTTGAGTTATTTATTCCTAATATCTAGTTGATTGCATTGTG  100

seq1  AGTGAGGCAAAGCTTATTAATCCATTCTCCTGTGGGTGAGCATTGAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGCAAAGCTTATTAATCCATTCTCCTGTGGGTGAGCATTGAAGTC  150

seq1  ATTTTTTAACTTCCCACAATGAACCTCAGTCGGGTGCTCTTACCCACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAACTTCCCACAATGAACCTCAGTCGGGTGCTCTTACCCACTGA  200

seq1  GCCATCTCACCAGCCCCAACTTCCCACAATGAAAACCACTCTGCAGTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCACCAGCCCCAACTTCCCACAATGAAAACCACTCTGCAGTGAC  250

seq1  TACTGTTCCTGTGAGTCTTGCCTGGGCCTGGAGGGGACTTAGTGTGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTCCTGTGAGTCTTGCCTGGGCCTGGAGGGGACTTAGTGTGAATG  300

seq1  CCCTTGGGTTATTCCCATGGCTCAGCTTCCACAGTGCTGGGATTAAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGGTTATTCCCATGGCTCAGCTTCCACAGTGCTGGGATTAAAGGC  350

seq1  ATGTGCCACAACTGCCCACCTACTGCTGGTCTTTTGATGCACAAAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCACAACTGCCCACCTACTGCTGGTCTTTTGATGCACAAAATATT  400

seq1  AGTGTATTCATATGTGTGCACAAAGTATTAGTGTCTTCATATATGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATTCATATGTGTGCACAAAGTATTAGTGTCTTCATATATGTGTGT  450

seq1  GTGTGT  456
      ||||||
seq2  GTGTGT  456