BAC Information

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BAC

Clone NameB6Ng01-105B13
Chromosome18 (Build37)Y (Build37)
Map Location 89,733,089 - 89,734,2641,870,430 - 1,870,571
singlet/doubletsingletsinglet
Overlap geneDok6
Upstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105B13.bB6Ng01-105B13.g
ACCDH913208DH913209
length1,172376
definitionDH913208|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B13, 5' end.DH913209|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,733,089 - 89,734,264)(1,870,430 - 1,870,571)
sequence
gaattctttgtatatattggatattagctttctattggatgtaagaatgg
taaagttctttttccaatctgtgggttgctgttgtcttaatgacagtgtc
ctttgacttacagacgctttgcaattttatgaggtcccgtttgtcaattg
ttgattttagagcataagccaccagtgttcggttctacctatatatcatc
tgacttaaagtcagcaagaacaactgcactccaatttcttattatttctg
aggagtaatactttttggagaaagaaaaaacctcttcttcagaatagggt
ctattttaatatattatggtttgatcacatcaaagcatgttcccacataa
ggtataaattttgaattataaaatgatcaaataataattgaggcaaatga
tatttaaacctgattttgttctaagataataaattgaagttatatttgag
aagagatattatttccaaaaaattttaacttcacctaaacaaataatatt
atcagaactgagtctacaaccaaggaatatgtgttttttagaatataaaa
tgtgagtatacagtcatatattgctacagagttacgtacaatgtttatat
gtactaaacaaccaatataaaaatacaatcttgtcgggacttttcataaa
tattttatttaaaaatgtagaataataccaggacagatattatggacttt
acactttttaatgtcataacaacagccagcaaactaaagtggtagatgca
tttgagctatgtcctagtcactaaggaatgcctagcaacagttccccaag
caatccctcagctgatgcagttcagacaaagtgcttgttctactggaaaa
tttacatttagaaatacagagatcctttgcaagcagcccctgttcctatg
gtttctagaataaatcagggttttgttgatcaacagtgtggtggcttaaa
ctctatcacttaagaatttaaagagcgtccagggaggataggaacaaaga
ggaatataaaattctactttctgaagatcctcatcctggtttagttgagg
atttaatataattggaaatacccgccattcaatttttcactataatctta
tttgaatttacaatactgtaaaccagggtaaggaggagactaaaatattt
tctagtccttaaataaaaatat
aactaattagaaacagaaagaagtacacaaaaatatcacccaaaccagga
gctgactttttgagaaactcaacaagatagataaactcttagccagaatc
actagagggcacaggacagtatcctaattaacaaaatcagaaatgaaaaa
ggagacataacaacagaacctgaggaaatccaaagaatcatcagctccta
ttataaaaggctatatactggttagttcataatgttgactctagctgcat
atgtatcaaaagatggcctagtcagccatcaccggaaagagaggcccatt
ggacatgcaaactttatatgccccagtacaggggaacgccagggctaaaa
agtgggagtgggtgggtaggggagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89733089_89734264
seq2: B6Ng01-105B13.b_45_1216

seq1  GAATTCTTTGTATATATTGGATATTAGCTTTCTATTGGATGTAAGAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTATATATTGGATATTAGCTTTCTATTGGATGTAAGAATGG  50

seq1  TAAAGTTCTTTTTCCAATCTGTGGGTTGCTGTTGTCTTAATGACAGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTCTTTTTCCAATCTGTGGGTTGCTGTTGTCTTAATGACAGTGTC  100

seq1  CTTTGACTTACAGACGCTTTGCAATTTTATGAGGTCCCGTTTGTCAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTTACAGACGCTTTGCAATTTTATGAGGTCCCGTTTGTCAATTG  150

seq1  TTGATTTTAGAGCATAAGCCACCAGTGTTCGGTTCTACCTATATATCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTAGAGCATAAGCCACCAGTGTTCGGTTCTACCTATATATCATC  200

seq1  TGACTTAAAGTCAGCAAGAACAACTGCACTCCAATTTCTTATTATTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAAAGTCAGCAAGAACAACTGCACTCCAATTTCTTATTATTTCTG  250

seq1  AGGAGTAATACTTTTTGGAGAAAGAAAAAACCTCTTCTTCAGAATAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAATACTTTTTGGAGAAAGAAAAAACCTCTTCTTCAGAATAGGGT  300

seq1  CTATTTTAATATATTATGGTTTGATCACATCAAAGCATGTTCCCACATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTAATATATTATGGTTTGATCACATCAAAGCATGTTCCCACATAA  350

seq1  GGTATAAATTTTGAATTATAAAATGATCAAATAATAATTGAGGCAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAATTTTGAATTATAAAATGATCAAATAATAATTGAGGCAAATGA  400

seq1  TATTTAAACCTGATTTTGTTCTAAGATAATAAATTGAAGTTATATTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAACCTGATTTTGTTCTAAGATAATAAATTGAAGTTATATTTGAG  450

seq1  AAGAGATATTATTTCCAAAAAATTTTAACTTCACCTAAACAAATAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATATTATTTCCAAAAAATTTTAACTTCACCTAAACAAATAATATT  500

seq1  ATCAGAACTGAGTCTACAACCAAGGAATATGTGTTTTTTAGAATATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAACTGAGTCTACAACCAAGGAATATGTGTTTTTTAGAATATAAAA  550

seq1  TGTGAGTATACAGTCATATATTGCTACAGAGTTACGTACAATGTTTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTATACAGTCATATATTGCTACAGAGTTACGTACAATGTTTATAT  600

seq1  GTACTAAACAACCAATATAAAAATACAATCTTGTCGGGACTTTTCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAACAACCAATATAAAAATACAATCTTGTCGGGACTTTTCATAAA  650

seq1  TATTTTATTTAAAAATGTAGAATAATACCAGGACAGATATTATGGACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTAAAAATGTAGAATAATACCAGGACAGATATTATGGACTTT  700

seq1  ACACTTTTTAATGTCATAACAACAGCCAGCAAACTAAAGTGGTAGATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTTTAATGTCATAACAACAGCCAGCAAACTAAAGTGGTAGATGCA  750

seq1  TTTGAGCTATGTCCTAGTCACTAAGGAATGCCTAGCAACAGTTCCCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTATGTCCTAGTCACTAAGGAATGCCTAGCAACAGTTCCCCAAG  800

seq1  CAATCCCTCAGCTGATGCAGTTCAGACAAAGTGCTTGTTCTACTGGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCTCAGCTGATGCAGTTCAGACAAAGTGCTTGTTCTACTGGAAAA  850

seq1  TTTACATTTAGAAATACAGAGATCCTTTGCAAGCAGCCCCTGTTCCTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTAGAAATACAGAGATCCTTTGCAAGCAGCCCCTGTTCCTATG  900

seq1  GTTTCTAGAATAAATCAGGGTTTTGTTGATCAACAGTGTGGTGGCTTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGAATAAATCAGGGTTTTGTTGATCAACAGTGTGGTGGCTTAAA  950

seq1  CTCTATCACTTAAGAATTTAAAGAGCGTCCAGGGAGGATAGGAACAAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCACTTAAGAATTTAAAGAGCGTCCAGGGAGGATAGGAACAAAGA  1000

seq1  GGAATATAAAATTCTACTTTCTGAAAGATTCTCAATCCT-GTTTAGTTGA  1049
      ||||||||||||||||||||||| ||||| ||| ||||| ||||||||||
seq2  GGAATATAAAATTCTACTTTCTG-AAGATCCTC-ATCCTGGTTTAGTTGA  1048

seq1  AGATCTAATAT-ATTGGAAATACACG-CATTC-ATTTTTCACTATAAATC  1096
       ||| |||||| ||||||||||| || ||||| |||||||||||| ||||
seq2  GGATTTAATATAATTGGAAATACCCGCCATTCAATTTTTCACTAT-AATC  1097

seq1  TTATTTGAATTTACAATACTGTAAACAAATGTAAAGGAGGAAAACTTAAA  1146
      |||||||||||||||||||||||||| |  || |||||||| |   ||||
seq2  TTATTTGAATTTACAATACTGTAAACCAGGGT-AAGGAGGAGA--CTAAA  1144

seq1  ATAATTTCTAGTCCTTTAAAATAAATATAT  1176
      ||| ||||||||||||  ||||||| ||||
seq2  ATATTTTCTAGTCCTT--AAATAAAAATAT  1172

seq1: chrY_1870430_1870571
seq2: B6Ng01-105B13.g_307_448

seq1  TTGACTCTTGCTGCATAGGTATCAAAAGATGGCCTAGTCGGCCATCACTG  50
      |||||||| |||||||| ||||||||||||||||||||| |||||||| |
seq2  TTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCAGCCATCACCG  50

seq1  GAAAGAGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGG  100

seq1  AACGCCAGGGCCAAAAAGGGGCAGTGGGTGGGTAGGGGAGTG  142
      ||||||||||| |||||| || ||||||||||||||||||||
seq2  AACGCCAGGGCTAAAAAGTGGGAGTGGGTGGGTAGGGGAGTG  142