BAC Information

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BAC

Clone NameB6Ng01-105D13
Chromosome18 (Build37)
Map Location 28,239,576 - 28,407,818
singlet/doubletdoublet
Overlap geneEG271505
Upstream geneEG665646
Downstream geneEG625997, BC051408, LOC100040930
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105D13.bB6Ng01-105D13.g
ACCDH913302DH913303
length1,1081,098
definitionDH913302|Mus musculus domesticus DNA, BAC clone: B6Ng01-105D13, 5' end.DH913303|Mus musculus domesticus DNA, BAC clone: B6Ng01-105D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,406,705 - 28,407,818)(28,239,576 - 28,240,684)
sequence
gaattctttgcaaatgtacacataagagatgaatgtgaggtggatttttt
tttcatttgtatgtctgcaaagcaacctattcttttggtttacatgtgtt
tgggagtgattagatgaataatggttttattactatctgttagagagagt
tatttgccttgtcccctcgaggtatgagaattacataggcttcactgctg
actgcagaacagaccctgtgcttacgaacagaggtctacctccctttctt
tcttgaggcttaagacaagtttggaggccagtcttttctcctttgcactc
tactggctcttgcagcctgaagctagcttgttataacctacttaggcagt
ggggagctgctgcccatcacttcagaatcaatgactgcagatggaagctt
ggatgcagtactttctgcctgcagttacaagcagttaatagattttatta
taattattttaactgcaaaagctcagaaggaaacttaaaggagatgtgca
ggtttgctaatcaaaatcacacagttgcacacaacaaagggcagtggagt
cttttgaaagcatcgttctcagagcctggagtaatattaataacgataca
aataataaatctgttctttgggggatttgtttgcatgaacctcaaatgtc
agttcatcagaattttgctaaaggaaagaaatattcaccaagttaccatc
aagggaggaacactctttgttctgactgttttgttctgttttgctttgct
ggttatacatggttgtgtttcttcatttgtgagtgttttcatgtgtgagt
gtataagtatgtgtatatgtctgtttctgagtctgtgtctttgtgtgtat
gaatgtatccatatagtataactttttggtaaaaaaaaatcaggatgctt
aaataatttcaaatgctgaggctcataactccacccaaagaaagaacatt
tataaggattatttattttggtcaatatattatacttcctaatctggatt
ttaatgtatcgaacactgattgattttgcagacaagaaatccattggcct
cttttactctgtatttcttaataatggtctgctacattttgcaatctata
gcaccttc
gaattcttggactgatgtattgagttaatgcaaggaataaatggcgtttg
tctctttcattgagcagctagttgttttcatagaaagtccaccctggtga
tctaagaacactgaaaagctcctgaccctcttgcactgggctaactttca
atatattgattgagtgtgcctcacacatgcactgcaaagaatttctttca
gaagaggtgagggatgcaaggtaggggctcaaaactgctaaaattaatat
aaacaagtatgcaaactgtcaaagaataaatagacaacttgtttaaatct
catttatttaatgcatgtatttattgaaatataaaatataagcatttctt
catcactttccgaatttcctggaaagaaggccatgtggtacatattcata
atccaaaaatttaaagaatgattttgtattaatcatgaatagtagaaaaa
taacagaaagaatttggatatgtgactgtatcagcattactttcagaaag
caaactgacaattacattgagtcaagaacaaataagtaatcagataactt
gataatttaacactttctaatagctgttctggatttgaagacaataagtt
aaaaaaaaacaaaaacctgtatcccaacacatcttttaacctgcttgaaa
aattatgctttgcccaccactatgatgactttttgcaataaggatttgtg
gatgcattagcacacttcagtttctaactccaaaatttctgtccaccatg
ggaaaatgaaagccacacagaaaggaataaatgaaataagtcaatattta
cctgattgtttaccctggaaagggaggagaatttagtctcaggcatctct
acatgacttctttcatatctgtaccctaaaacttagatgtttcccacaaa
tattattgttgcttgttactttcctctactctctacaataactataaggc
ctttaggtgatgtagattgaattataatacttggagggattgtttacaca
gtgaaatgagaaagtgtggtatagggattctgtagacttagttttataaa
gtgggacatttcattttctctaggattagaggagacaagggccagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_28406705_28407818
seq2: B6Ng01-105D13.b_44_1151 (reverse)

seq1  GAAGATGCTATATGATTGCCAAAATGTAGCAGACAATTA-TAAGAAATAC  49
      |||| ||||||| ||||| ||||||||||||||| |||| ||||||||||
seq2  GAAGGTGCTATA-GATTG-CAAAATGTAGCAGACCATTATTAAGAAATAC  48

seq1  AGAGTAAAAGAGGGCAAATGGATATCTTTGTCTGCAATATCAATCAGTGT  99
      ||||||||||| ||| ||||||| || |||||||||| ||||||||||||
seq2  AGAGTAAAAGA-GGCCAATGGATTTC-TTGTCTGCAAAATCAATCAGTGT  96

seq1  CTGATTAACA-TAAGATCCAGATTAGGAAGTATAATATATTTGACAAAAT  148
        |||  ||| ||| |||||||||||||||||||||||| ||||| ||| 
seq2  TCGAT--ACATTAAAATCCAGATTAGGAAGTATAATATA-TTGACCAAAA  143

seq1  TAAATAATCCTTATAAATGTTCTTTCTTTGGGTGGAGTTATGAGCCTCAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATCCTTATAAATGTTCTTTCTTTGGGTGGAGTTATGAGCCTCAG  193

seq1  CATTTGAAATTATTTAAGCATCCTGATTTTTTTTTTACCAAAAAGTTATA  248
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATTTGAAATTATTTAAGCATCCTGA-TTTTTTTTTACCAAAAAGTTATA  242

seq1  CTATATGGATACATTCATACACACAAAGACACAGACTCAGAAACAGACAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGGATACATTCATACACACAAAGACACAGACTCAGAAACAGACAT  292

seq1  ATACACATACTTATACACTCACACATGAAAACACTCACAAATGAAGAAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATACTTATACACTCACACATGAAAACACTCACAAATGAAGAAAC  342

seq1  ACAACCATGTATAACCAGCAAAGCAAAACAGAACAAAACAGTCAGAACAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATGTATAACCAGCAAAGCAAAACAGAACAAAACAGTCAGAACAA  392

seq1  AGAGTGTTCCTCCCTTGATGGTAACTTGGTGAATATTTCTTTCCTTTAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTCCTCCCTTGATGGTAACTTGGTGAATATTTCTTTCCTTTAGC  442

seq1  AAAATTCTGATGAACTGACATTTGAGGTTCATGCAAACAAATCCCCCAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTGATGAACTGACATTTGAGGTTCATGCAAACAAATCCCCCAAA  492

seq1  GAACAGATTTATTATTTGTATCGTTATTAATATTACTCCAGGCTCTGAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGATTTATTATTTGTATCGTTATTAATATTACTCCAGGCTCTGAGA  542

seq1  ACGATGCTTTCAAAAGACTCCACTGCCCTTTGTTGTGTGCAACTGTGTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGCTTTCAAAAGACTCCACTGCCCTTTGTTGTGTGCAACTGTGTGA  592

seq1  TTTTGATTAGCAAACCTGCACATCTCCTTTAAGTTTCCTTCTGAGCTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTAGCAAACCTGCACATCTCCTTTAAGTTTCCTTCTGAGCTTTT  642

seq1  GCAGTTAAAATAATTATAATAAAATCTATTAACTGCTTGTAACTGCAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAAAATAATTATAATAAAATCTATTAACTGCTTGTAACTGCAGGC  692

seq1  AGAAAGTACTGCATCCAAGCTTCCATCTGCAGTCATTGATTCTGAAGTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTACTGCATCCAAGCTTCCATCTGCAGTCATTGATTCTGAAGTGA  742

seq1  TGGGCAGCAGCTCCCCACTGCCTAAGTAGGTTATAACAAGCTAGCTTCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCAGCTCCCCACTGCCTAAGTAGGTTATAACAAGCTAGCTTCAG  792

seq1  GCTGCAAGAGCCAGTAGAGTGCAAAGGAGAAAAGACTGGCCTCCAAACTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAGAGCCAGTAGAGTGCAAAGGAGAAAAGACTGGCCTCCAAACTT  842

seq1  GTCTTAAGCCTCAAGAAAGAAAGGGAGGTAGACCTCTGTTCGTAAGCACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAGCCTCAAGAAAGAAAGGGAGGTAGACCTCTGTTCGTAAGCACA  892

seq1  GGGTCTGTTCTGCAGTCAGCAGTGAAGCCTATGTAATTCTCATACCTCGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGTTCTGCAGTCAGCAGTGAAGCCTATGTAATTCTCATACCTCGA  942

seq1  GGGGACAAGGCAAATAACTCTCTCTAACAGATAGTAATAAAACCATTATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAAGGCAAATAACTCTCTCTAACAGATAGTAATAAAACCATTATT  992

seq1  CATCTAATCACTCCCAAACACATGTAAACCAAAAGAATAGGTTGCTTTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAATCACTCCCAAACACATGTAAACCAAAAGAATAGGTTGCTTTGC  1042

seq1  AGACATACAAATGAAAAAAAAATCCACCTCACATTCATCTCTTATGTGTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACAAATGAAAAAAAAATCCACCTCACATTCATCTCTTATGTGTA  1092

seq1  CATTTGCAAAGAATTC  1114
      ||||||||||||||||
seq2  CATTTGCAAAGAATTC  1108

seq1: chr18_28239576_28240684
seq2: B6Ng01-105D13.g_70_1167

seq1  GAATTCTTGGACTGATGTATTGAGTTAATGCAAGGAATAAATGGCGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGACTGATGTATTGAGTTAATGCAAGGAATAAATGGCGTTTG  50

seq1  TCTCTTTCATTGAGCAGCTAGTTGTTTTCATAGAAAGTCCACCCTGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCATTGAGCAGCTAGTTGTTTTCATAGAAAGTCCACCCTGGTGA  100

seq1  TCTAAGAACACTGAAAAGCTCCTGACCCTCTTGCACTGGGCTAACTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAACACTGAAAAGCTCCTGACCCTCTTGCACTGGGCTAACTTTCA  150

seq1  ATATATTGATTGAGTGTGCCTCACACATGCACTGCAAAGAATTTCTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGATTGAGTGTGCCTCACACATGCACTGCAAAGAATTTCTTTCA  200

seq1  GAAGAGGTGAGGGATGCAAGGTAGGGGCTCAAAACTGCTAAAATTAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTGAGGGATGCAAGGTAGGGGCTCAAAACTGCTAAAATTAATAT  250

seq1  AAACAAGTATGCAAACTGTCAAAGAATAAATAGACAACTTGTTTAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTATGCAAACTGTCAAAGAATAAATAGACAACTTGTTTAAATCT  300

seq1  CATTTATTTAATGCATGTATTTATTGAAATATAAAATATAAGCATTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTAATGCATGTATTTATTGAAATATAAAATATAAGCATTTCTT  350

seq1  CATCACTTTCCGAATTTCCTGGAAAGAAGGCCATGTGGTACATATTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTTTCCGAATTTCCTGGAAAGAAGGCCATGTGGTACATATTCATA  400

seq1  ATCCAAAAATTTAAAGAATGATTTTGTATTAATCATGAATAGTAGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAAATTTAAAGAATGATTTTGTATTAATCATGAATAGTAGAAAAA  450

seq1  TAACAGAAAGAATTTGGATATGTGACTGTATCAGCATTACTTTCAGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAAAGAATTTGGATATGTGACTGTATCAGCATTACTTTCAGAAAG  500

seq1  CAAACTGACAATTACATTGAGTCAAGAACAAATAAGTAATCAGATAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGACAATTACATTGAGTCAAGAACAAATAAGTAATCAGATAACTT  550

seq1  GATAATTTAACACTTTCTAATAGCTGTTCTGGATTTGAAGACAATAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTAACACTTTCTAATAGCTGTTCTGGATTTGAAGACAATAAGTT  600

seq1  AAAAAAAAACAAAAACCTGTATCCCAACACATCTTTTAACCTGCTTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACAAAAACCTGTATCCCAACACATCTTTTAACCTGCTTGAAA  650

seq1  AATTATGCTTTGCCCACCACTATGATGACTTTTTGCAATAAGGATTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGCTTTGCCCACCACTATGATGACTTTTTGCAATAAGGATTTGTG  700

seq1  GATGCATTAGCACACTTCAGTTTCTAACTCCAAAATTTCTGTCCACCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATTAGCACACTTCAGTTTCTAACTCCAAAATTTCTGTCCACCATG  750

seq1  GGAAAATGAAAGCCACACAGAAAGGAATAAAATGAAATAAGTCAATATTT  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGAAAATGAAAGCCACACAGAAAGGAAT-AAATGAAATAAGTCAATATTT  799

seq1  ACCTGATTGTTTACCCTGGAAAGGGAGGAGAATTTAGTCTCAGGCATCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATTGTTTACCCTGGAAAGGGAGGAGAATTTAGTCTCAGGCATCTC  849

seq1  TACATGACTTCTTTCATATCTGTACCCTAAAACCTTAGATGTTTCCCACA  900
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  TACATGACTTCTTTCATATCTGTACCCTAAAA-CTTAGATGTTTCCCAC-  897

seq1  AAATATTATTGTTGCTTGTTACTTTCCTCTACTCTCTACAATAACTATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTATTGTTGCTTGTTACTTTCCTCTACTCTCTACAATAACTATAA  947

seq1  GGCCTTTAGGTGAATGTAGACTGAATTATAAATACTTGGAAGGGATTGTT  1000
      |||||||||||| ||||||| |||||||| ||||||||| |||||||| |
seq2  GGCCTTTAGGTG-ATGTAGATTGAATTAT-AATACTTGG-AGGGATTG-T  993

seq1  TTACAACAGTGGAATGAGAAAGTGTGGTATAGGGGATTCTGTAGAACTTA  1050
      |||| |||||| ||||||||||||||||||| |||||||||||| |||||
seq2  TTAC-ACAGTGAAATGAGAAAGTGTGGTATA-GGGATTCTGTAG-ACTTA  1040

seq1  GTTTTATAAAGGTGGAACA-TTCATTTTCTCTAGGATTATAGAAGAAACA  1099
      |||||||||| |||| ||| ||||||||||||||||||| || ||| | |
seq2  GTTTTATAAA-GTGGGACATTTCATTTTCTCTAGGATTAGAGGAGACA-A  1088

seq1  AGGCCAGAGA  1109
       |||||||||
seq2  GGGCCAGAGA  1098