BAC Information

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BAC

Clone NameB6Ng01-105L16
Chromosome18 (Build37)
Map Location 87,701,184 - 87,868,948
singlet/doubletdoublet
Overlap genenone
Upstream geneCbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1
Downstream geneLOC329008, LOC100039961, LOC100039972, LOC623177, LOC665497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105L16.bB6Ng01-105L16.g
ACCDH913669DH913670
length6871,185
definitionDH913669|Mus musculus domesticus DNA, BAC clone: B6Ng01-105L16, 5' end.DH913670|Mus musculus domesticus DNA, BAC clone: B6Ng01-105L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,701,184 - 87,701,871)(87,867,749 - 87,868,948)
sequence
gaattcaagtgacttctatttagccagatcaaaataatattatttttctc
attcagctttgtttccttttaaggatacattttaaaataacattatttga
atttccgtttagtgtattatttatgatatcattatttttttttttttttt
tttttttttttttttttagtgtcaacaaatttatttattttttttttttt
cattttttttttattaggtatttaactcatttacatttccaatgctatac
caaaagtcccccttaccccccccccccccctcccctacccaccaactccc
cccctttggccctggggttcccctgtaccggggcaaaaaaagtttgcgtg
tccaatgggcctctctttccagggatggccaactaggccatcttttgata
catatgcagctaaagtcaaaaactcaggggtactggttagttcaaaatgt
tgttccacctatagggttgaaaatccctttaactccttgggtactttctc
tagctcctccattgggagccctgtgatccatccattagctgactggaagc
atccacttctgtgtttgctaggccccggcatattctcacaaaaaacagct
acatctgggtcctttcaataaaatcttgctagtgtaagcaatggtgtcac
catttggaaactgatttggggtggatccctggatatg
gaattctcaaaagcatgtgatttggtttcattcattgtggtcatattgga
acataatcaaactaaattatatttgattaaattaaatataaatctcataa
ttgtgttacctccaagcctatgagatttatatttaaattgagggaaagca
gtataaatcagtcctggtcaaggtatgatcttacccattacagacctgac
attgtctgaattttggtatgtattacaagttgttcaatacgttatcagga
tgtaatttattcctgaaaaaagtttgcacacactttcatcctttccattc
cccatgtgtaagattcttgtgaactctccaattttttgaagtccgttact
tcagcagtttgaatgtcaaaaggaaatgaatacatatttctctttagaat
atcttttcatttttttttcactaccaagatcgtcatagttattgagggaa
gaatagataggctcagtagtctcagataggtatttcatgcccaatttagt
ctagataatatcttctccacatgtggcagacaatcaagtggtagagataa
gaaattcatcttatttctgtaaatttcgtgacgatagagttttcttagat
tgagtaaatatctttgtaatcactcactacatttcctatgttcaatcttt
gaaattaaataggtactgaaccttgaaacaaattttaaaactaaagacgt
gcttagtgcttgttcaacaaacagtagactcagatataaataatgaaaca
atttctgtgtatttctatattattttagtattctatcctttctaaattta
ttttttttcttacagacctaaatgtatattctcttattcactcttttttg
ttaatccaatgtcatccaatttggactatccaaattgtttcttactctca
gataaaatagtgaagtgtttattatctaataatataacttgctaagacaa
tattgtgaacaaagttttgagagcatttcatcaggtcaaacaaatgtaca
aaatgtgttaatacatataaaatgcctactataaaagtttttgtcttaat
cttcctagaaaagttatattagtaataaaatttattgtccataccttgaa
ttggagaaacttatttcaacgaggactagtctttttgaatttgtatagac
tgtgtgttagagagataagacatatgttttgacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_87701184_87701871
seq2: B6Ng01-105L16.b_46_732

seq1  GAATTCAAGTGACTTCTATTTAGCCAGATCAAAATAATATTATTTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGACTTCTATTTAGCCAGATCAAAATAATATTATTTTTCTC  50

seq1  ATTCAGCTTTGTTTCCTTTTAAGGATACATTTTAAAATAACATTATTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCTTTGTTTCCTTTTAAGGATACATTTTAAAATAACATTATTTGA  100

seq1  ATTTCCGTTTAGTGTATTATTTATGATATCATTATTTTTTTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCGTTTAGTGTATTATTTATGATATCATTATTTTTTTTTTTTTTTT  150

seq1  TTTTTTTTTTTTTTTTTAGTGTCAACAAATTTATTTATTTTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTAGTGTCAACAAATTTATTTATTTTTTTTTTTTT  200

seq1  CATTTTTTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATAC  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CATTTTTTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATAC  250

seq1  CAAAAGTCCCCCTTACCCACCCACCCCCACTCCCCTACCCACCAACTCCC  300
      |||||||||||||||||| ||| ||||| |||||||||||||||||||||
seq2  CAAAAGTCCCCCTTACCCCCCCCCCCCCCCTCCCCTACCCACCAACTCCC  300

seq1  CCCCTTTGGCCCTGGCGTTCCCCTGTACCGGGGCACACAAAGTCTGCGTG  350
      ||||||||||||||| ||||||||||||||||||| | ||||| ||||||
seq2  CCCCTTTGGCCCTGGGGTTCCCCTGTACCGGGGCAAAAAAAGTTTGCGTG  350

seq1  TCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATA  400
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  TCCAATGGGCCTCTCTTTCCAGGGATGGCCAACTAGGCCATCTTTTGATA  400

seq1  CATATGCAGCTAGAGTCAAGAGCTCAGGGGTACTGGTTAGTTCATAATGT  450
      |||||||||||| |||||| | |||||||||||||||||||||| |||||
seq2  CATATGCAGCTAAAGTCAAAAACTCAGGGGTACTGGTTAGTTCAAAATGT  450

seq1  TGTTCCACCTATAGGGTTGAAGATCCCTTTAGCTCCTTGGGTACTTTCTC  500
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  TGTTCCACCTATAGGGTTGAAAATCCCTTTAACTCCTTGGGTACTTTCTC  500

seq1  TAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGC  550
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  TAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGGAAGC  550

seq1  ATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCT  600
      |||||||||||||||||||||||||||||||| |||||||| | ||||||
seq2  ATCCACTTCTGTGTTTGCTAGGCCCCGGCATATTCTCACAAAAAACAGCT  600

seq1  ACATCTGGGTCCTTTCAGTAAAATCTTGCTAGTGTATGCAATGGTGTCAG  650
      ||||||||||||||||| |||||||||||||||||| |||||||||||| 
seq2  ACATCTGGGTCCTTTCAATAAAATCTTGCTAGTGTAAGCAATGGTGTCAC  650

seq1  CATTTGGAAGCTGATTATGGGGTGGATCCCTGGATATG  688
      ||||||||| |||||| |||||||||||||||||||||
seq2  CATTTGGAAACTGATT-TGGGGTGGATCCCTGGATATG  687

seq1: chr18_87867749_87868948
seq2: B6Ng01-105L16.g_68_1252 (reverse)

seq1  TTGTCCAAAACATATG-CTTATCTCTCT-ACACACAGTTCCTAT-CAAAT  47
      |||| ||||||||||| ||||||||||| |||||||||  |||| |||||
seq2  TTGT-CAAAACATATGTCTTATCTCTCTAACACACAGT--CTATACAAAT  47

seq1  CTAAAACAGACTTATGTCTTCTGTTGAAATTAAGTTTCT-CAAATCATGT  96
       | ||| |||||   ||| || ||||||| ||||||||| ||| ||| | 
seq2  -TCAAAAAGACT--AGTCCTC-GTTGAAA-TAAGTTTCTCCAATTCAAGG  92

seq1  TATTGACAATTAAATTTTATATTACTAATTATTACTTTTTCTAGTAGATT  146
      ||| ||||| |||||||  ||||||||| ||| || |||||||| |   |
seq2  TATGGACAA-TAAATTT--TATTACTAA-TATAAC-TTTTCTAGGAAGAT  137

seq1  TAAGACATAGACTTTTATAGTAGGCATTTTATATGTATTAACACATTTTG  196
      ||||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAAAACTTTTATAGTAGGCATTTTATATGTATTAACACATTTTG  187

seq1  TTACATTTGTTTGACCTTGATGAAATGCTCTTCAAAAACTTTGTTCACAA  246
       ||||||||||||||| ||||||||||||||   ||||||||||||||||
seq2  -TACATTTGTTTGACC-TGATGAAATGCTCT--CAAAACTTTGTTCACAA  233

seq1  TTATTGTTCTTAGCAAGTTATATTATTAGATAATAAACACTTCACTATTT  296
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  -TATTG-TCTTAGCAAGTTATATTATTAGATAATAAACACTTCACTATTT  281

seq1  TATCTGAGAGTAAGAAACAATTTGGATAGTCCAAATTGGATGACATTGGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGAGTAAGAAACAATTTGGATAGTCCAAATTGGATGACATTGGA  331

seq1  TTAACAAAAAAGAGTGAATAAGAGAATATACATTTAGGTCTGTAAGAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAAAAGAGTGAATAAGAGAATATACATTTAGGTCTGTAAGAAAA  381

seq1  AAAATAAATTTAGAAAGGATAGAATACTAAAATAATATAGAAATACACAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATTTAGAAAGGATAGAATACTAAAATAATATAGAAATACACAG  431

seq1  AAATTGTTTCATTATTTATATCTGAGTCTACTGTTTGTTGAACAAGCACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTTCATTATTTATATCTGAGTCTACTGTTTGTTGAACAAGCACT  481

seq1  AAGCACGTCTTTAGTTTTAAAATTTGTTTCAAGGTTCAGTACCTATTTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACGTCTTTAGTTTTAAAATTTGTTTCAAGGTTCAGTACCTATTTAA  531

seq1  TTTCAAAGATTGAACATAGGAAATGTAGTGAGTGATTACAAAGATATTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGATTGAACATAGGAAATGTAGTGAGTGATTACAAAGATATTTA  581

seq1  CTCAATCTAAGAAAACTCTATCGTCACGAAATTTACAGAAATAAGATGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCTAAGAAAACTCTATCGTCACGAAATTTACAGAAATAAGATGAA  631

seq1  TTTCTTATCTCTACCACTTGATTGTCTGCCACATGTGGAGAAGATATTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATCTCTACCACTTGATTGTCTGCCACATGTGGAGAAGATATTAT  681

seq1  CTAGACTAAATTGGGCATGAAATACCTATCTGAGACTACTGAGCCTATCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTAAATTGGGCATGAAATACCTATCTGAGACTACTGAGCCTATCT  731

seq1  ATTCTTCCCTCAATAACTATGACGATCTTGGTAGTGAAAAAAAAATGAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCCTCAATAACTATGACGATCTTGGTAGTGAAAAAAAAATGAAA  781

seq1  AGATATTCTAAAGAGAAATATGTATTCATTTCCTTTTGACATTCAAACTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTCTAAAGAGAAATATGTATTCATTTCCTTTTGACATTCAAACTG  831

seq1  CTGAAGTAACGGACTTCAAAAAATTGGAGAGTTCACAAGAATCTTACACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTAACGGACTTCAAAAAATTGGAGAGTTCACAAGAATCTTACACA  881

seq1  TGGGGAATGGAAAGGATGAAAGTGTGTGCAAACTTTTTTCAGGAATAAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAATGGAAAGGATGAAAGTGTGTGCAAACTTTTTTCAGGAATAAAT  931

seq1  TACATCCTGATAACGTATTGAACAACTTGTAATACATACCAAAATTCAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCTGATAACGTATTGAACAACTTGTAATACATACCAAAATTCAGA  981

seq1  CAATGTCAGGTCTGTAATGGGTAAGATCATACCTTGACCAGGACTGATTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCAGGTCTGTAATGGGTAAGATCATACCTTGACCAGGACTGATTT  1031

seq1  ATACTGCTTTCCCTCAATTTAAATATAAATCTCATAGGCTTGGAGGTAAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCTTTCCCTCAATTTAAATATAAATCTCATAGGCTTGGAGGTAAC  1081

seq1  ACAATTATGAGATTTATATTTAATTTAATCAAATATAATTTAGTTTGATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTATGAGATTTATATTTAATTTAATCAAATATAATTTAGTTTGATT  1131

seq1  ATGTTCCAATATGACCACAATGAATGAAACCAAATCACATGCTTTTGAGA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCAATATGACCACAATGAATGAAACCAAATCACATGCTTTTGAGA  1181

seq1  ATTC  1200
      ||||
seq2  ATTC  1185