BAC Information

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BAC

Clone NameB6Ng01-106J19
Chromosome18 (Build37)
Map Location 22,382,920 - 22,522,982
singlet/doubletdoublet
Overlap geneLOC546708, LOC100040547
Upstream geneGm944, LOC665722, LOC225264, Klhl14, 4921528I01Rik
Downstream geneAsxl3, Nol4, LOC100040579, LOC665797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106J19.bB6Ng01-106J19.g
ACCDH914304DH914305
length1,156967
definitionDH914304|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J19, 5' end.DH914305|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,382,920 - 22,384,081)(22,522,336 - 22,522,982)
sequence
gaattcaaaggctttctgcccagcatcctgtgtaactgagatatccacat
ttcaggcccttagccttggtgaggcattccttgacagtgatacatttttg
catatgcagcacaaccctattttagcctcatagtttttaaatgcacttcc
tagtttcaatctgtaaacatttttacagaattttatatatctttatctag
aaatgaaatcagtccattgctccattagtgtcaagaaattcagaattatt
taacttcgtcaaataaactgagaattttccattttttatgtatgctctta
ccatggtgaaataatatagtgactgttgaaataaatatagatgagaattt
attgtgtggtatgggtgacatttatcattggaaaaataaatgttgttgaa
taaataatgttgcaataaatgggcagtcatgagagaaaagtcacttcaca
gctaatgtttttccagtaaaggaaagatttaaatgtataataaagaagac
tataaacatcttagtaataggtatagaaggaaaatggcatttttttctat
ctctttatctgaggataaaaaatggacatcagggaacaacaatgcaaaga
gtaatcttaaaattaaaattggaagctgggcatggtggtgggaggcagaa
gcaggtgggtttctgagttcgaggccagcctggtctacaaagtgagttcc
aggacagccagggctatacagagaaaccctgtctcaaaaataaataaata
aataaataaataaataaataaataaataaataaaattggaaaatttgatt
ctgtaaaaagatgcttgtacaagaaaaatccaccctgaggctgtatttat
gggttagagacaatccctcagtaggcatgctcagttttagatgtgtgtat
catagcagaatacaaggaataaaataccccaacctctttttttttcttgc
tgttgccaataggcatacttctaagataggtctctataatatctttatca
gaatgtttagtccatagagccttctcctttaaatgtaggcccaacctagt
agttagaaccttacaaaattatgttgatggtgcaaagaccacagataccc
ctctgccaaccctttcgaatgatgcttggtggtgatgcaagctgccattg
tgcaaa
gaattcccgagagttgtgggccactaaactaggaattgaacccagatctg
ctagaagagtaggcaatgctcttaaccactgaataatttctccagtacta
tgtcttgtgggtttaaaattacaaatggctttttaaatctttaatttgta
taccactcttggaaatccatctggaggttgctcagaaaattggaaacaga
tctacctgaagacccagcaataccactcttgggaatatacccaaaagatg
ccccactattccacagggcatgtgttccactatgttcatagcatccttgt
ttgtgatagccagaagctggaaacaacccagatgtcccaagatagaaaaa
tgaatacagaaaatgtggttcatttacacaatggaatactactcagctat
taggaatgaggacatcttgagttttgcaggcaaatggatggaactataaa
atatcatcctgagtgagggaactcagacccaaaaggatatgcatagtacg
tactcactagtaagtggatattagccaaaaaaaaaaaaaaaagtagagac
tatccaagatacagaccacagaacttgaaaaggtcaacaagctgaagggc
ctatgtgaggatgcctcagtcccacttgggtaggagaagaaagcaaccac
aagaggggagggggagggacctgagagggaaagcagacaggcagggaatg
aaggactgaaccctgaacgacagcagaaagagtgaaacatgcaacatggg
ggagggaggggaagaactttgggtaatatgttttcctgctcttttttctt
acattttgatatttttaagtggtatacagccatgtttaatgttttatata
aaaagctatgattaattaaaattatttgagtatatacaaaattatctctt
ttatttagttgttatttatatttatctttactttcacagcatattctatg
tgttagtcctgtcatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_22382920_22384081
seq2: B6Ng01-106J19.b_44_1199

seq1  GAATTCAAAGGCTTTCTGCCACAGCATCCTGTGTAACTGAGATATCCACA  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAATTCAAAGGCTTTCTGCC-CAGCATCCTGTGTAACTGAGATATCCACA  49

seq1  TTTCAGGCCCTTAGCCTTGGTGAGGCATTCCTTGACAGTGATACATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGCCCTTAGCCTTGGTGAGGCATTCCTTGACAGTGATACATTTTT  99

seq1  GCATATGCAGCACAACCCTATTTTAGCCTCATAGTTTTTAAATGCACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGCAGCACAACCCTATTTTAGCCTCATAGTTTTTAAATGCACTTC  149

seq1  CTAGTTTCAATCTGTAAACATTTTTACAGAATTTTATATATCTTTATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTCAATCTGTAAACATTTTTACAGAATTTTATATATCTTTATCTA  199

seq1  GAAATGAAATCAGTCCATTGCTCCATTAGTGTCAAGAAATTCAGAATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAATCAGTCCATTGCTCCATTAGTGTCAAGAAATTCAGAATTAT  249

seq1  TTAACTTCATCAAATAAACTGAGAATTTTCCATTTTTTATGTATGCTCTT  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTCGTCAAATAAACTGAGAATTTTCCATTTTTTATGTATGCTCTT  299

seq1  ACCATGGTGAAATAATATAGTGACTGTTGAAATAAATATAGATGAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGTGAAATAATATAGTGACTGTTGAAATAAATATAGATGAGAATT  349

seq1  TATTGTGTGGTATGGGTGACATTTATCATTGGAAAAATAAATGTTGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTGGTATGGGTGACATTTATCATTGGAAAAATAAATGTTGTTGA  399

seq1  ATAAATAATGTTGCAATAAATGGGCAGTCATGAGAGAAAAGTCACTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATGTTGCAATAAATGGGCAGTCATGAGAGAAAAGTCACTTCAC  449

seq1  AGCTAATGTTTTTCCAGTAAAGGAAAGATTTAAATGTATAATAAAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATGTTTTTCCAGTAAAGGAAAGATTTAAATGTATAATAAAGAAGA  499

seq1  CTATAAACATCTTAGTAATAGGTATAGAAGGAAAATGGCATTTTTTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAACATCTTAGTAATAGGTATAGAAGGAAAATGGCATTTTTTTCTA  549

seq1  TCTCTTTATCTGAGGATAAAAAATGGACATCAGGGAACAACAATGCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTATCTGAGGATAAAAAATGGACATCAGGGAACAACAATGCAAAG  599

seq1  AGTAATCTTAAAATTAAAATTGGAAGCTGGGCATGGTGGTGGGAGGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCTTAAAATTAAAATTGGAAGCTGGGCATGGTGGTGGGAGGCAGA  649

seq1  AGCAGGTGGGTTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTGGGTTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC  699

seq1  CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAATAAATAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAATAAATAAAT  749

seq1  AAATAAATAAATAAATAAATAAATAAATAAATAAAATTGGAAAATTTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATAAATAAATAAATAAATAAAATTGGAAAATTTGAT  799

seq1  TCTGTAAAAAGATGCTTGTACAAGAAAAATCCACCCTGAGGCTGTATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAAAAGATGCTTGTACAAGAAAAATCCACCCTGAGGCTGTATTTA  849

seq1  TGGGTTAGAGACAATTCCTCAGTAGGCATGCTCAGTTTTAGATGTGTGTA  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGGTTAGAGACAATCCCTCAGTAGGCATGCTCAGTTTTAGATGTGTGTA  899

seq1  TCATAGCAGGAATACAAGGAATAAAATACCCCAACCTCTTTTTTTTTCTT  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCA-GAATACAAGGAATAAAATACCCCAACCTCTTTTTTTTTCTT  948

seq1  GCTGTTGCCAATAGGCATACTTCTAAGATAGGTCTCTATAATATCTTTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTGTTGCCAATAGGCATACTTCTAAGATAGGTCTCTATAATATCTTTA-  997

seq1  TCAGAATGTTATAGTCCATAGAGCCTTCTCCTTTAAAATGTAGGCCAAAC  1050
      |||||||||| ||||||||||||||||||||||| ||||||||||| |||
seq2  TCAGAATGTT-TAGTCCATAGAGCCTTCTCCTTT-AAATGTAGGCCCAAC  1045

seq1  CTAGTAATTTAGAACCTTACAAAA-TATGTGATTGGGTTGCAAAGACCAC  1099
      ||||| | |||||||||||||||| |||||   |||  ||||||||||||
seq2  CTAGT-AGTTAGAACCTTACAAAATTATGTTGATGG--TGCAAAGACCAC  1092

seq1  AGATAACTCTCTG-CTACCCTTTCAGATGATGCTTGTTGATGATGCAAGC  1148
      ||||| | ||||| | ||||||||  |||||||||| || ||||||||||
seq2  AGATACCCCTCTGCCAACCCTTTCGAATGATGCTTGGTGGTGATGCAAGC  1142

seq1  TGCCATGTTGCAAA  1162
      ||||||  ||||||
seq2  TGCCATTGTGCAAA  1156

seq1: chr18_22522336_22522982
seq2: B6Ng01-106J19.g_66_712 (reverse)

seq1  GTTGCTTTCTTCTCCTACCCAAGTGGGACTGAGGCATCCTCACTTAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTGCTTTCTTCTCCTACCCAAGTGGGACTGAGGCATCCTCACATAGGCC  50

seq1  CTTCAGCTTGTTGACCTTTTCAAGTTCTGTGGTCTGTATCTTGGATAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTGTTGACCTTTTCAAGTTCTGTGGTCTGTATCTTGGATAGTC  100

seq1  TCTACTTTTTTTTTTTTTTTTGGCTAATATCCACTTACTAGTGAGTACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTTTTTTTTTTTTTTGGCTAATATCCACTTACTAGTGAGTACGT  150

seq1  ACTATGCATATCCTTTTGGGTCTGAGTTCCCTCACTCAGGATGATATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCATATCCTTTTGGGTCTGAGTTCCCTCACTCAGGATGATATTTT  200

seq1  ATAGTTCCATCCATTTGCCTGCAAAACTCAAGATGTCCTCATTCCTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCCATCCATTTGCCTGCAAAACTCAAGATGTCCTCATTCCTAATA  250

seq1  GCTGAGTAGTATTCCATTGTGTAAATGAACCACATTTTCTGTATTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTAGTATTCCATTGTGTAAATGAACCACATTTTCTGTATTCATTT  300

seq1  TTCTATCTTGGGACATCTGGGTTGTTTCCAGCTTCTGGCTATCACAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTTGGGACATCTGGGTTGTTTCCAGCTTCTGGCTATCACAAACA  350

seq1  AGGATGCTATGAACATAGTGGAACACATGCCCTGTGGAATAGTGGGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCTATGAACATAGTGGAACACATGCCCTGTGGAATAGTGGGGCAT  400

seq1  CTTTTGGGTATATTCCCAAGAGTGGTATTGCTGGGTCTTCAGGTAGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGTATATTCCCAAGAGTGGTATTGCTGGGTCTTCAGGTAGATCT  450

seq1  GTTTCCAATTTTCTGAGCAACCTCCAGATGGATTTCCAAGAGTGGTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAATTTTCTGAGCAACCTCCAGATGGATTTCCAAGAGTGGTATAC  500

seq1  AAATTAAAGATTTAAAAAGCCATTTGTAATTTTAAACCCACAAGACATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAGATTTAAAAAGCCATTTGTAATTTTAAACCCACAAGACATAG  550

seq1  TACTGGAGAAATTATTCAGTGGTTAAGAGCATTGCCTACTCTTCTAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAGAAATTATTCAGTGGTTAAGAGCATTGCCTACTCTTCTAGCAG  600

seq1  ATCTGGGTTCAATTCCTAGTTTAGTGGCCCACAACTCTCTGGAATTC  647
      ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCTGGGTTCAATTCCTAGTTTAGTGGCCCACAACTCTCGGGAATTC  647