BAC Information

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BAC

Clone NameB6Ng01-107M19
Chromosome18 (Build37)
Map Location 47,508,597 - 47,693,347
singlet/doubletdoublet
Overlap geneSema6a, LOC628477, 9130209A04Rik
Upstream geneEG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120
Downstream geneA730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107M19.bB6Ng01-107M19.g
ACCDH915158DH915159
length1,1231,107
definitionDH915158|Mus musculus domesticus DNA, BAC clone: B6Ng01-107M19, 5' end.DH915159|Mus musculus domesticus DNA, BAC clone: B6Ng01-107M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,508,597 - 47,509,731)(47,692,226 - 47,693,347)
sequence
gaattcctagaatacactgtgctataaaatgagatttggctccacggagc
tgggagaaaacaatgggctcaatagtacccagcactggctgctgggtgta
ttctagctcctttagtcggggcctttcattcatgggagcaggagccacac
tataaaatgaaggggaggagggtgtcttactgctgtggaaatgctgagcg
caggacggcaggaaaaccccaacatacttgcataccagggtcaggacata
ccactttccccacccaactggacgcagcttcaacaaagactataatctct
tctaaataaactgctatgattagtaaagtgtatccagcatcaggactggc
ttacatagatcgtattttagaaggaagtagagaataggacagacttttac
ctctggaaagagggggtgaatggggtgacgggaacagagcacagagtgtc
cctttctgtgtctgcacatggcctgactctgtaaagagaagcgacgaaca
gttaatggggagcaagctgtttccccatcactgcactctgacaaagagtc
acccgccaatccgtggaaggctgagattccatcagtaaacggcaagagtg
acttcgagcttgttcctaacttgcaaagttgaaaggaaaagatgagagaa
ttctaactcaaaaaagtgcctcagacactccagtgactgctgaattaaaa
aacagcccattgaaggctgcacaggcaggtacacaggtaggtgcaagccc
atgtaattattgatgaacagttgtcaaaccaattggcccctcaagcacct
gctttaacgtggtcagtggtttttaaagtccattgtaaccggactgtata
ttcaaaactccatggcagtggtcactagtcagtaattagcaggtggagaa
ggaggaatggactatactggttcatttagagatactcacatgaaagcatg
cataataaccttcataaaacttttataaataacttttacaaggtaacttt
taaaaaaattgctaacaaatactgtacagaagcaaagctgtggaaaaaat
tctctattgaattgctagtaatttggtgtgggtgcaaccagtggctctga
atgcctgaccaatttgaagctag
gaattcactacaaggcctggtggcccaagggaagaccagtgttggtgctt
aagccacaacagatgaagtgagcatggagctgctggcggggagcctgcac
tgcctccttggactgatggactgtgggaagttgtgccagggactagtggg
aacagccagctttattaggagtcaaagcttcaatgggaaaccctttccaa
ggtgtctttcacatgtccttgctattcctctgctgcaccggtattaataa
taaagcaataaagcacatcactgagcacagcctgtaacttctaccatgta
ctgtggcccttaaatgatggcctcatttctagctaccaaaatggctaaac
aaaagaatagccatttgcttgcctgctgccctccacagagtgcaagacac
acctcccaaaaacaggtttgtaaaattggtgtcatgctcaggataccatt
agggtgtacttgaaccactgtaacttcgtttgtgaggtaggactaatgtt
ctctcatctcctcctccacgttcttcctcagtccttgtaagcctttatag
ggagggccctgtggggctggcttcagcagggtgcaaatgaagatcgggga
gggcagtagggctccatcctccttcacaggtcctggcccaggggaagata
agctgagaaggatactttctacagaaacatagactgggtctgaagagatg
gctcagtagttaagagcactgactgctcttccaaaggtgcccagttcaaa
tcccagcaactacatggtggctcacaaccatccgtaatgagatctgacac
cctcttctggtgtgtctgaagacagctacagtatccttatgtgtataata
aataagtcttttaaaaaagaaaaaacaagagagatagagtggggcttgtt
ttctgatgtggggtagtagatttcccagactggtaccttttatttcactg
tggcttctagttcccaagctcttggcagaggttctgatcattgtaaaatg
acctcttctgattgctcttctgaaagctttctggcgtcttatcaagcctc
aataaccacagaatcaaggcagttaccgccctccatcaattgacgtgaag
caaacgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_47508597_47509731
seq2: B6Ng01-107M19.b_47_1169

seq1  GAATTCCTAGAATACACTGTGCTATAAAATGAGATTTGGCTCCACGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAATACACTGTGCTATAAAATGAGATTTGGCTCCACGGAGC  50

seq1  TGGGAGAAAACAATGGGCTCAATAGTACCCAGCACTGGCTGCTGGGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAAAACAATGGGCTCAATAGTACCCAGCACTGGCTGCTGGGTGTA  100

seq1  TTCTAGCTCCTTTAGTCGGGGCCTTTCATTCATGGGAGCAGGAGCCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTCCTTTAGTCGGGGCCTTTCATTCATGGGAGCAGGAGCCACAC  150

seq1  TATAAAATGAAGGGGAGGAGGGTGTCTTACTGCTGTGGAAATGCTGAGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGAAGGGGAGGAGGGTGTCTTACTGCTGTGGAAATGCTGAGCG  200

seq1  CAGGACGGCAGGAAAACCCCAACATACTTGCATACCAGGGTCAGGACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACGGCAGGAAAACCCCAACATACTTGCATACCAGGGTCAGGACATA  250

seq1  CCACTTTCCCCACCCAACTGGACGCAGCTTCAACAAAGACTATAATCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCCCCACCCAACTGGACGCAGCTTCAACAAAGACTATAATCTCT  300

seq1  TCTAAATAAACTGCTATGATTAGTAAAGTGTATCCAGCATCAGGACTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATAAACTGCTATGATTAGTAAAGTGTATCCAGCATCAGGACTGGC  350

seq1  TTACATAGATCGTATTTTAGAAGGAAGTAGAGAATAGGACAGACTTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGATCGTATTTTAGAAGGAAGTAGAGAATAGGACAGACTTTTAC  400

seq1  CTCTGGAAAGAGGGGGTGAATGGGGTGACGGGAACAGAGCACAGAGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAAGAGGGGGTGAATGGGGTGACGGGAACAGAGCACAGAGTGTC  450

seq1  CCTTTCTGTGTCTGCACATGGCCTGACTCTGTAAAGAGAAGCGACGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGTGTCTGCACATGGCCTGACTCTGTAAAGAGAAGCGACGAACA  500

seq1  GTTAATGGGGAGCAAGCTGTTTCCCCATCACTGCACTCTGACAAAGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGGGGAGCAAGCTGTTTCCCCATCACTGCACTCTGACAAAGAGTC  550

seq1  ACCCGCCAATCCGTGGAAGGCTGAGATTCCATCAGTAAACGGCAAGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCCAATCCGTGGAAGGCTGAGATTCCATCAGTAAACGGCAAGAGTG  600

seq1  ACTTCGAGCTTGTTCCTAACTTGCAAAGTTGAAAGGAAAAGATGAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGAGCTTGTTCCTAACTTGCAAAGTTGAAAGGAAAAGATGAGAGAA  650

seq1  TTCTAACTCAAAAAAGTGCCTCAGACACTCCAGTGACTGCTGAATTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTCAAAAAAGTGCCTCAGACACTCCAGTGACTGCTGAATTAAAA  700

seq1  AACAGCCCATTGAAGGCTGCACAGGCAGGTACACAGGTAGGTGCAAGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCCATTGAAGGCTGCACAGGCAGGTACACAGGTAGGTGCAAGCCC  750

seq1  ATGTAATTATTGATGAACAGTTGTCAAACCAATTGGCCCCTCAAGCACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTATTGATGAACAGTTGTCAAACCAATTGGCCCCTCAAGCACCT  800

seq1  GCTTTAACGTGGTCAGTGGTTTTTAAAGTCCATTGTAACCGGACTGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAACGTGGTCAGTGGTTTTTAAAGTCCATTGTAACCGGACTGTATA  850

seq1  TTCAAAACTCCATGGCAGTGGTCACTAGTCAGTAATTAGCAGGGTGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCAAAACTCCATGGCAGTGGTCACTAGTCAGTAATTAGCA-GGTGGAGA  899

seq1  AGGAGGAATGGACTATACTGGTTCATTTAGAGATACTCACATGAAAGCAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGGAGGAATGGACTATACTGGTTCATTTAGAGATACTCACATGAAAGC-A  948

seq1  TGCATAATAACCTTCATAAAACTTTTATAAATAACTTTTACAAAGTAACT  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCATAATAACCTTCATAAAACTTTTATAAATAACTTTTACAAGGTAACT  998

seq1  TTTATAAAAATTGCTAACAAATACTGTACAGGAAGCAAAGCTGTGGAAAA  1050
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTAAAAAAATTGCTAACAAATACTGTACA-GAAGCAAAGCTGTGGAAAA  1047

seq1  AATTCTCTACTGAATTTGGCTTAGTAAATATGGTGTGGTGGCAACCAAGT  1100
      ||||||||| ||||||  || |||| ||| ||||||||  |||||| |||
seq2  AATTCTCTATTGAATT--GC-TAGT-AATTTGGTGTGGGTGCAACC-AGT  1092

seq1  GGCCTCTGATTGGCTGACCATTTTGAAAAGGCTAG  1135
      || |||||| || ||||||| ||||||   |||||
seq2  GG-CTCTGAATGCCTGACCAATTTGAA---GCTAG  1123

seq1: chr18_47692226_47693347
seq2: B6Ng01-107M19.g_66_1172 (reverse)

seq1  CCGTTTGCTCATCTGTCAAATGGTGGGAGGGCGGTGACTGCCTTGGATTC  50
      |||||||||   | ||||| || | |||||||||| |||||||| |||||
seq2  CCGTTTGCTTCAC-GTCAATTGAT-GGAGGGCGGTAACTGCCTT-GATTC  47

seq1  TGTGGTGA-TGAGGCTGGGATAAGACGGCCAGAAAGCTTTCAGAAAGAGC  99
      |||||| | |||||||  |||||||| |||||||||||||||| ||||||
seq2  TGTGGTTATTGAGGCT-TGATAAGAC-GCCAGAAAGCTTTCAG-AAGAGC  94

seq1  AATCCAGAAGAGGTCATTTTTACAATGGTTCAGAACCTCTTGCCAAGGAG  149
      ||| |||||||||||| ||||||||| | |||||||||| |||||| |||
seq2  AAT-CAGAAGAGGTCA-TTTTACAAT-GATCAGAACCTC-TGCCAA-GAG  139

seq1  CTTGGGAACTAGAAGCCCACAGTGAAATAAAAGGTACCAGTCTGGGAAAT  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTGGGAACTAGAAG-CCACAGTGAAATAAAAGGTACCAGTCTGGGAAAT  188

seq1  CTACTACCCCCACATCAGAAAACAAGCCCCACTCTATCTCTCTTTGTTTT  249
      |||||| |||||||||||||||||||||||||||||||||||||   |||
seq2  CTACTA-CCCCACATCAGAAAACAAGCCCCACTCTATCTCTCTT--GTTT  235

seq1  TTTCTTTTTTAAAAGACTTATTTATTATTACACATAAGGATACTGTAGCT  299
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTCTTTTTTAAAAGACTTATTTATTA-TACACATAAGGATACTGTAGCT  284

seq1  GTCTTCAGACACACCAGAAGAGGGTGTCAGATCTCATTACGGATGGTTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGACACACCAGAAGAGGGTGTCAGATCTCATTACGGATGGTTGT  334

seq1  GAGCCACCATGTAGTTGCTGGGATTTGAACTGGGCACCTTTGGAAGAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCATGTAGTTGCTGGGATTTGAACTGGGCACCTTTGGAAGAGCA  384

seq1  GTCAGTGCTCTTAACTACTGAGCCATCTCTTCAGACCCAGTCTATGTTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGCTCTTAACTACTGAGCCATCTCTTCAGACCCAGTCTATGTTTC  434

seq1  TGTAGAAAGTATCCTTCTCAGCTTATCTTCCCCTGGGCCAGGACCTGTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAAGTATCCTTCTCAGCTTATCTTCCCCTGGGCCAGGACCTGTGA  484

seq1  AGGAGGATGGAGCCCTACTGCCCTCCCCGATCTTCATTTGCACCCTGCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATGGAGCCCTACTGCCCTCCCCGATCTTCATTTGCACCCTGCTG  534

seq1  AAGCCAGCCCCACAGGGCCCTCCCTATAAAGGCTTACAAGGACTGAGGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCCCCACAGGGCCCTCCCTATAAAGGCTTACAAGGACTGAGGAA  584

seq1  GAACGTGGAGGAGGAGATGAGAGAACATTAGTCCTACCTCACAAACGAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTGGAGGAGGAGATGAGAGAACATTAGTCCTACCTCACAAACGAAG  634

seq1  TTACAGTGGTTCAAGTACACCCTAATGGTATCCTGAGCATGACACCAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGGTTCAAGTACACCCTAATGGTATCCTGAGCATGACACCAATT  684

seq1  TTACAAACCTGTTTTTGGGAGGTGTGTCTTGCACTCTGTGGAGGGCAGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAACCTGTTTTTGGGAGGTGTGTCTTGCACTCTGTGGAGGGCAGCA  734

seq1  GGCAAGCAAATGGCTATTCTTTTGTTTAGCCATTTTGGTAGCTAGAAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCAAATGGCTATTCTTTTGTTTAGCCATTTTGGTAGCTAGAAATG  784

seq1  AGGCCATCATTTAAGGGCCACAGTACATGGTAGAAGTTACAGGCTGTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCATTTAAGGGCCACAGTACATGGTAGAAGTTACAGGCTGTGCT  834

seq1  CAGTGATGTGCTTTATTGCTTTATTATTAATACCGGTGCAGCAGAGGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGTGCTTTATTGCTTTATTATTAATACCGGTGCAGCAGAGGAAT  884

seq1  AGCAAGGACATGTGAAAGACACCTTGGAAAGGGTTTCCCATTGAAGCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGACATGTGAAAGACACCTTGGAAAGGGTTTCCCATTGAAGCTTT  934

seq1  GACTCCTAATAAAGCTGGCTGTTCCCACTAGTCCCTGGCACAACTTCCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTAATAAAGCTGGCTGTTCCCACTAGTCCCTGGCACAACTTCCCA  984

seq1  CAGTCCATCAGTCCAAGGAGGCAGTGCAGGCTCCCCGCCAGCAGCTCCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCATCAGTCCAAGGAGGCAGTGCAGGCTCCCCGCCAGCAGCTCCAT  1034

seq1  GCTCACTTCATCTGTTGTGGCTTAAGCACCAACACTGGTCTTCCCTTGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTCATCTGTTGTGGCTTAAGCACCAACACTGGTCTTCCCTTGGG  1084

seq1  CCACCAGGCCTTGTAGTGAATTC  1122
      |||||||||||||||||||||||
seq2  CCACCAGGCCTTGTAGTGAATTC  1107