BAC Information

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BAC

Clone NameB6Ng01-107N03
Chromosome18 (Build37)
Map Location 32,582,927 - 32,584,059
singlet/doubletsinglet
Overlap geneBin1
Upstream geneSyt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3
Downstream geneGypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4, Stard4, EG433170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107N03.bB6Ng01-107N03.g
ACCDH915174DH915175
length1,0621,126
definitionDH915174|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N03, 5' end.DH915175|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttggggtcacttaagtatacaatcatatcatctgcaaatagt
gatattttgacttcttcttttccaatttgtttccctttgacctccttttg
ttgtctaattgctctagctagaacttcaagtactaaattgaatagatagg
aagagagtggacagccttgtctagtccctgattttagtgggattgcttca
agtttctctccattcagtttgatgttggctactggtttgctgtatattgc
ttttactatgtttaggtatgggcttgagttcctgatcttcccaagacttt
taacatgaagggatgctgaattttgtcaaatgatttttcagcacctaatg
aaatgatcatgtggctttttttctttgagtttatgtagtggattatgttg
atggatttctatatattgaaccatccctgcatccctgggatgaagcctac
ttgatcatggtgaatgattgttttgatgtgttcttggatttggtaagcaa
taattttattgagtatttttgtattgatattcatacaggaaattggtctg
aagttctctttgttgggtctttctgtggtttaggtatcagagtaattgtg
gcttcatagaatgaattgggtagaataccttttgtttctattttgtggaa
cagtttgaggagagttggaattaggtcttctttgaaggtctgatagaact
ctgcactaaacccatctggtcctgggctatttttggttgggagattattg
atgaccgcttctatctctttaggggttatgggactgtttagatggattat
ctgatcctgttttaactttggcacctggtgtgtgtctagaaaattgtcca
tttcatctagattttcaattttgttgagtataagcttttgtaggaggatc
taatgattttttttgaatttccatggttttctgttgtatgtctccctttc
atttctgaatttattaatttgatgctgttctcgggactgttgtagctggt
atggtttactacctttgattttcaagaacatctcccggatttgtgtatct
ggtacgttctct
gaattccatgtccgtatgcatgggcagagtagaagtgtgaagaccagagc
atgcttctgtatggttcatagggggcttgtcttggaagcaagggtgcagc
agcgagaaccaatctcctccccacctgggcctcatagcacaagcaagcca
gacatcctagaggcaaagtgagtctcttacatcagacaggagcctcttca
ctcagcctactccctagtctgctccgcagacctctgtagcatctcccacc
tgtcccttcccaactgcacagatgtgaccacaacccaggagcccacccgc
ccgcccgttacactttccttcccatagttcctcagcttagtgcacaccct
ggagaaacatccaaacatagcaaagctggcatggatggaccggtggcttc
actgcagagaggtgatagttgacagagcgccaagccctgagcagcagggt
ctccttgggaacacgcgggtcagggatgcacacctcagccactggatatg
cagggggaggggattcatccgtgcgggcaaaaggcagcagccaacagtta
tcataggcctacttaatttaaataaactagcattgccagctcagcttcca
ggattgcaatggacacatttcagctgctcaagagctacatgaagcaatca
gctatggtgttgacatgtgaagatctacaacattctagaaggaccactag
aactgttaccccagactcctgatctggagcagtcttgttttatgagggta
tacttgcctccctaaagaatacatagcaatataaatacagtgtgtatggg
gaaggtttaagcaagtgcggctccgtgtcctccactcagtaccttttgca
cgcctatactcatggtcgatcagcagcagcccagggctggctttagcgtt
ttgcaaaggacaaggctagactaatcctcaaaccacatgccagtaccttc
tacctccctagtatcccaagtccgccatgccctcctgacacatgtcccaa
gcaacaggacacacgggcaggttagggggtagtgggcccttcaacaggca
cagtcacaaggcccatgcgcagtcaggcggggcccagagcccgtgcactg
catctaaggcggtaccttgtctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_32582927_32584059
seq2: B6Ng01-107N03.g_68_1193 (reverse)

seq1  AGAAAGAAGAACAGGTACCGCCTTGAGTGCAGTGCCACGGGCCTCTGGGC  50
      |||   ||||  ||||||||||||   ||||||| |||||| ||||||||
seq2  AGA---AAGACAAGGTACCGCCTTAGATGCAGTG-CACGGG-CTCTGGGC  45

seq1  CCCGCCCTGACTGCGCATGCGCCTTGTGACTGTGCCCTGTTGAAGGGCCC  100
      |||| |||||||||||||| |||||||||||||| |||||||||||||||
seq2  CCCG-CCTGACTGCGCATGGGCCTTGTGACTGTG-CCTGTTGAAGGGCCC  93

seq1  ACTAACCCCTAACCTGCCCGTGTGTCCTGTTGCTTGGGGACATGTGTCAG  150
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTACCCCCTAACCTGCCCGTGTGTCCTGTTGCTT-GGGACATGTGTCAG  142

seq1  GAGGGCATGGCGGACTTGGGATACTAGGGAGGTAGAAGGTACTGGCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCATGGCGGACTTGGGATACTAGGGAGGTAGAAGGTACTGGCATGT  192

seq1  GGTTTGAGGATTAGTCTAGCCTTGTCCTTTGC-ATACGCTAAAGCCAGCC  249
      |||||||||||||||||||||||||||||||| | |||||||||||||||
seq2  GGTTTGAGGATTAGTCTAGCCTTGTCCTTTGCAAAACGCTAAAGCCAGCC  242

seq1  CTGGGCTGCTGCTGATCGACCATGAGTATAGGCGTGCAAAAGGTACTGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTGCTGCTGATCGACCATGAGTATAGGCGTGCAAAAGGTACTGAG  292

seq1  TGGA-GACACGGAGCCGCACTTGCTTAAACCTTCCCCATACACACTGTAT  348
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGAGGACACGGAGCCGCACTTGCTTAAACCTTCCCCATACACACTGTA-  341

seq1  TTTATATTGCTATGTATTCTTTAGGGAGGCAAGTATACCCTCATAAAACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTGCTATGTATTCTTTAGGGAGGCAAGTATACCCTCATAAAACA  391

seq1  AGACTGCTCCAGATCAGGAGTCTGGGGTAACAGTTCTAGTGGTCCTTCTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTCCAGATCAGGAGTCTGGGGTAACAGTTCTAGTGGTCCTTCTA  441

seq1  GAATGTTGTAGATCTTCACATGTCAACACCATAGCTGATTGCTTCATGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTGTAGATCTTCACATGTCAACACCATAGCTGATTGCTTCATGTA  491

seq1  GCTCTTGAGCAGCTGAAATGTGTCCATTGCAATCCTGGAAGCTGAGCTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGAGCAGCTGAAATGTGTCCATTGCAATCCTGGAAGCTGAGCTGG  541

seq1  CAATGCTAGTTTATTTAAATTAAGTAGGCCTATGATAACTGTTGGCTGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTAGTTTATTTAAATTAAGTAGGCCTATGATAACTGTTGGCTGCT  591

seq1  GCCTTTTGCCCGCACGGATGAATCCCCTCCCCCTGCATATCCAGTGGCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTGCCCGCACGGATGAATCCCCTCCCCCTGCATATCCAGTGGCTG  641

seq1  AGGTGTGCATCCCTGACCCGCGTGTTCCCAAGGAGACCCTGCTGCTCAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCATCCCTGACCCGCGTGTTCCCAAGGAGACCCTGCTGCTCAGG  691

seq1  GCTTGGCGCTCTGTCAACTATCACCTCTCTGCAGTGAAGCCACCGGTCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCGCTCTGTCAACTATCACCTCTCTGCAGTGAAGCCACCGGTCCA  741

seq1  TCCATGCCAGCTTTGCTATGTTTGGATGTTTCTCCAGGGTGTGCACTAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCAGCTTTGCTATGTTTGGATGTTTCTCCAGGGTGTGCACTAAG  791

seq1  CTGAGGAACTATGGGAAGGAAAGTGTAACGGGCGGGCGGGTGGGCTCCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAACTATGGGAAGGAAAGTGTAACGGGCGGGCGGGTGGGCTCCTG  841

seq1  GGTTGTGGTCACATCTGTGCAGTTGGGAAGGGACAGGTGGGAGATGCTAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGGTCACATCTGTGCAGTTGGGAAGGGACAGGTGGGAGATGCTAC  891

seq1  AGAGGTCTGCGGAGCAGACTAGGGAGTAGGCTGAGTGAAGAGGCTCCTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCTGCGGAGCAGACTAGGGAGTAGGCTGAGTGAAGAGGCTCCTGT  941

seq1  CTGATGTAAGAGACTCACTTTGCCTCTAGGATGTCTGGCTTGCTTGTGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTAAGAGACTCACTTTGCCTCTAGGATGTCTGGCTTGCTTGTGCT  991

seq1  ATGAGGCCCAGGTGGGGAGGAGATTGGTTCTCGCTGCTGCACCCTTGCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCCCAGGTGGGGAGGAGATTGGTTCTCGCTGCTGCACCCTTGCTT  1041

seq1  CCAAGACAAGCCCCCTATGAACCATACAGAAGCATGCTCTGGTCTTCACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAAGCCCCCTATGAACCATACAGAAGCATGCTCTGGTCTTCACA  1091

seq1  CTTCTACTCTGCCCATGCATACGGACATGGAATTC  1133
      |||||||||||||||||||||||||||||||||||
seq2  CTTCTACTCTGCCCATGCATACGGACATGGAATTC  1126