BAC Information

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BAC

Clone NameB6Ng01-107N10
Chromosome18 (Build37)
Map Location 64,278,767 - 64,335,902
singlet/doubletdoublet
Overlap geneLOC667773
Upstream gene9030411M15Rik, LOC627792, Txnl1, Wdr7, LOC629436
Downstream geneSt8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480, Nedd4l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107N10.bB6Ng01-107N10.g
ACCDH915186DH915187
length1,1031,199
definitionDH915186|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N10, 5' end.DH915187|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,278,767 - 64,279,884)(64,334,666 - 64,335,902)
sequence
gaattcacagaagcaaagtcttgaggtttgtggtcatgatgcatctgtgg
tcagggagacagaaaggtcagtgctggttctcagtcccttctctcctctt
tattcagtactgggtcctatctcatggaacagtgtaaaccacagttgggg
ggggggtgttcctctcacctcagttcatccagtcaaaaaatcccccaccc
tggcatgctcttaggcagttcttgaggacaatcaatatcaaccatcacag
atatttatcaagtctctgcctcactgtacagtggtttagatttgttcatc
tgctctgaggcttatgtgatgcagggggatcactccttgttctcttcacg
ccccgtacatggtacagggtctggctcagagtaaacactctgaactctaa
caccccatctaatacatctaatagagacatctatcagcagtattgtgagc
caggaaattcagagcgcagagagtgcacacggaaacagtgttcagcgggt
gggaagagactcacttttatcgaaagaggagttcacaagtcagaaactga
aagacatggaaccctgtggagcacagaccctctgtgcgatcctcatggca
cacctttgacacccaccctctctctcctcgtgggataagtagctttgaca
ggctttgccaggacagcaaataacgttgctttctctcgccagctttggaa
tgatgaagatctgttctttttttctcccaccatctcccaagaagggtacc
tcccctagagttggtatgttgcccgagtatagggatctacaagcccagag
gaaagcttttcagttctcacccccaaatttctagtgatatctggcttgaa
atccatgacttgtgtaacatacaaagaataaaagctgtagtaatgattct
actgggttggggcctctgaagcttcttccttaccagaagagctaggcaaa
ccatctgcccctctagagctagcaggccttgtcttcagtatgagccaatg
atctgtgactcggccgcaacagtaggccttcaggactctttgctgtccca
aggtgtaagtcaagttctcctctctgtacttagcctttggagacaaactc
tat
gaattcaaaggaaacagaattggcaggggattgatttcttatcttttgaa
aactagaagagaggaaacccaggagtgtctgactgagcaggctggataag
aatctatgaggctagtcctagccagaggcaaacattagccacacataact
attctcccttcaaaacagtcccatttggactggagaggaagctcagaggt
taagaacacatactggaacttgagtttggtttctagtgcctacgttcaca
acaaggctggttcataacgacctataaccagctccaagaaatctgataca
ctcttttggtccttatgagaacctcccctaccctcaccccaatgtggcaa
ttcacagacacacacacacacacacaatcaacccaccaataatgaaacat
aaatcttatgaaaaaaaaaaaaagaacagccttactgttattccacatgt
ccatcagctttggtgtctgaagatgctgaaggctaccactttgccttgtt
tctctccctccctctacaaaataagggcaatgccaagagccagggtagca
gcaggatggaactttgactttaagatcagaaaactgattcctaggcttga
acccccagctgagatatttggcttcagaactggttccctcttttgtgcat
gaggacagtcaaccatatcatctcgagagtggttgtgagaatgaaatgaa
aggaaaataatgcaagtgtgattttttttttgtacatcctaagagttaga
gagaccaagttcattgatgacagaatggtgatgaccatgacataatgctg
atagtgatggccagttgcaggctgcctttgcttgtctacacaacaatggc
aacaaaggcatccagtctttatggagggaagcgaatgctccagacacata
gccctcagaaaatggtcttgcgagcatgagatcctctgaggaatcctaga
gctggatatcactgattcttcccgtggcagcagattagcaactgatcacg
agtgtcatcaaaggcttaagacagttgtacaaggtaggtggtgagggttc
ttgtgccactaaaagaaagtactctgctgcttcaaattattccagagctg
tttcttctgctctttcatgtcaatgaggaatactgactgaagcagtaagg
atgccaggcactgggattatcagcctgaatcttcaagtggacattccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_64278767_64279884
seq2: B6Ng01-107N10.b_46_1148

seq1  GAATTCACAGAAGCAAAGTCTTGAGGTTTGTGGTCATGATGCATCTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAAGCAAAGTCTTGAGGTTTGTGGTCATGATGCATCTGTGG  50

seq1  TCAGGGAGACAGAAAGGTCAGTGCTGGTTCTCAGTCCCTTCTCTCCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGACAGAAAGGTCAGTGCTGGTTCTCAGTCCCTTCTCTCCTCTT  100

seq1  TATTCAGTACTGGGTCCTATCTCATGGAACAGTGTAAACCACAGTTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTACTGGGTCCTATCTCATGGAACAGTGTAAACCACAGTTGGGG  150

seq1  GGGGGGTGTTCCTCTCACCTCAGTTCATCCAGTCAAAAAATCCCCCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTGTTCCTCTCACCTCAGTTCATCCAGTCAAAAAATCCCCCACCC  200

seq1  TGGCATGCTCTTAGGCAGTTCTTGAGGACAATCAATATCAACCATCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGCTCTTAGGCAGTTCTTGAGGACAATCAATATCAACCATCACAG  250

seq1  ATATTTATCAAGTCTCTGCCTCACTGTACAGTGGTTTAGATTTGTTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATCAAGTCTCTGCCTCACTGTACAGTGGTTTAGATTTGTTCATC  300

seq1  TGCTCTGAGGCTTATGTGATGCAGGGGGATCACTCCTTGTTCTCTTCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGAGGCTTATGTGATGCAGGGGGATCACTCCTTGTTCTCTTCACG  350

seq1  CCCCGTACATGGTACAGGGTCTGGCTCAGAGTAAACACTCTGAACTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTACATGGTACAGGGTCTGGCTCAGAGTAAACACTCTGAACTCTAA  400

seq1  CACCCCATCTAATACATCTAATAGAGACATCTATCAGCAGTATTGTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCATCTAATACATCTAATAGAGACATCTATCAGCAGTATTGTGAGC  450

seq1  CAGGAAATTCAGAGCGCAGAGAGTGCACACGGAAACAGTGTTCAGCGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATTCAGAGCGCAGAGAGTGCACACGGAAACAGTGTTCAGCGGGT  500

seq1  GGGAAGAGACTCACTTTTATCGAAAGAGGAGTTCACAAGTCAGAAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGACTCACTTTTATCGAAAGAGGAGTTCACAAGTCAGAAACTGA  550

seq1  AAGACATGGAACCCTGTGGAGCACAGACCCTCTGTGCGATCCTCATGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGGAACCCTGTGGAGCACAGACCCTCTGTGCGATCCTCATGGCA  600

seq1  CACCTTTGACACCCACCCTCTCTCTCCTCGTGGGATAAGTAGCTTTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTGACACCCACCCTCTCTCTCCTCGTGGGATAAGTAGCTTTGACA  650

seq1  GGCTTTGCCAGGACAGCAAATAACGTTGCTTTCTCTCGCCAGCTTTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGCCAGGACAGCAAATAACGTTGCTTTCTCTCGCCAGCTTTGGAA  700

seq1  TGATGAAGATCTGTTCTTTTTTTCTCCCACCATCTCCCAAGAAGGGTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAGATCTGTTCTTTTTTTCTCCCACCATCTCCCAAGAAGGGTACC  750

seq1  TCCCCTAGAGTTGGTATGTTGCCCGAGTATAGGGATCTACAAGCCCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAGAGTTGGTATGTTGCCCGAGTATAGGGATCTACAAGCCCAGAG  800

seq1  GAAAGCTTTCCAGTTCTCACCCCCAAATTTCTAGTGATATCTGGCTTGAA  850
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTTTTCAGTTCTCACCCCCAAATTTCTAGTGATATCTGGCTTGAA  850

seq1  ATCCATGACTTGTGTAACATACAAAGAATAAAAGCTGTAGTAATGATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCCATGACTTGTGTAACATACAAAGAATAAAAGCTGTAGTAATGATTC-  899

seq1  TACTGGGTTTGGGGCCTTCTGAAGCTTC-TCCTTACCAGAAGAGCTAGGC  949
      ||||||| |||||||| ||||||||||| |||||||||||||||||||||
seq2  TACTGGG-TTGGGGCC-TCTGAAGCTTCTTCCTTACCAGAAGAGCTAGGC  947

seq1  AGAGCCATCTTGCCCCTCTAGAGCTAGCAGGCCTCTGGCCTTCCAGTATG  999
      | | ||||| |||||||||||||||||||||||| || |  | |||||||
seq2  A-AACCATC-TGCCCCTCTAGAGCTAGCAGGCCT-TGTC--TTCAGTATG  992

seq1  AGCCAATGATCTGTGACTCCAGCCGCAAACAGTAGGCCTTCAGTGACTCC  1049
      |||||||||||||||||| | ||||| |||||||||||||||| ||||| 
seq2  AGCCAATGATCTGTGACT-CGGCCGC-AACAGTAGGCCTTCAG-GACTCT  1039

seq1  TTCTGCCTTCCCCAAGGTGTAGGTCAAGTTCTACCTCTCTGTACTCTAGC  1099
      ||    ||  ||||||||||| |||||||||| |||||||||||| ||||
seq2  TT---GCTGTCCCAAGGTGTAAGTCAAGTTCT-CCTCTCTGTACT-TAGC  1084

seq1  CTTTGTAGACAGACTCTAT  1118
      ||||| ||||| |||||||
seq2  CTTTGGAGACAAACTCTAT  1103

seq1: chr18_64334666_64335902
seq2: B6Ng01-107N10.g_63_1261 (reverse)

seq1  AGGGGATGTGCCAC-TGAAGATCTCACGAAACTGATAATCCCCAGATGCC  49
      |||| |||| |||| ||||||| ||| |   |||||||| ||||| ||| 
seq2  AGGGAATGT-CCACTTGAAGAT-TCAGG---CTGATAAT-CCCAG-TGC-  42

seq1  TTCTGCCTTTTCCCCTTCCCTGCCTTTCAGCTCAGTTATTTCCTCATGTT  99
        ||| | |    ||||  ||||  ||||| |||||   |||||||  ||
seq2  --CTGGCAT----CCTT-ACTGC--TTCAG-TCAGT--ATTCCTCA--TT  78

seq1  GACCATGGAAAGAGGCAGGGAAAGGAAAACAGGGCTCTGGGATAATGTGA  149
      || ||| |||||| ||||   |||  |||||  ||||||| ||||| |||
seq2  GA-CAT-GAAAGA-GCAG---AAG--AAACA--GCTCTGGAATAATTTGA  118

seq1  GGCAGCAGAGTACTCTCTCTAGGTGGGCCACAGGAACCCTCA-CACCTAC  198
       ||||||||||||| ||| |  ||||  |||| ||||||||| |||||||
seq2  AGCAGCAGAGTACTTTCTTTTAGTGG--CACAAGAACCCTCACCACCTAC  166

seq1  CTTTGTACAACTGTCTTTAAGCCTTTGATTGACACTCGTGATTCAGTTGC  248
      | ||||||||||||| |||||||||||| |||||||||||| ||||||||
seq2  C-TTGTACAACTGTC-TTAAGCCTTTGA-TGACACTCGTGA-TCAGTTGC  212

seq1  TAATTCTGCTGCCACGGGGAAGAATCAGTGAATATCCAGCTCTAGGATTC  298
      ||| ||||||||||| |||||||||||||| |||||||||||||||||||
seq2  TAA-TCTGCTGCCAC-GGGAAGAATCAGTG-ATATCCAGCTCTAGGATTC  259

seq1  CTCAGAGGATCTCATGCTCGCAAGACCATTTTCTGAGGGCTATGTGTCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGATCTCATGCTCGCAAGACCATTTTCTGAGGGCTATGTGTCTG  309

seq1  GAGCATTCGCTTCCCTCCATAAAGACTGGATGCCTTTGTTGCCATTGTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTCGCTTCCCTCCATAAAGACTGGATGCCTTTGTTGCCATTGTTG  359

seq1  TGTAGACAAGCAAAGGCAGCCTGCAACTGGCCATCACTATCAGCATTATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACAAGCAAAGGCAGCCTGCAACTGGCCATCACTATCAGCATTATG  409

seq1  TCATGGTCATCACCATTCTGTCATCAATGAACTTGGTCTCTCTAACTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTCATCACCATTCTGTCATCAATGAACTTGGTCTCTCTAACTCTT  459

seq1  AGGATGTAC-AAAAAAAAATCACACTTGCATTATTTTCCTTTCATTTCAT  547
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTACAAAAAAAAAATCACACTTGCATTATTTTCCTTTCATTTCAT  509

seq1  TCTCACAACCACTCTCGAGATGATATGGTTGACTGTCCTCATGCACAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAACCACTCTCGAGATGATATGGTTGACTGTCCTCATGCACAAAA  559

seq1  GAGGGAACCAGTTCTGAAGCCAAATATCTCAGCTGGGGGTTCAAGCCTAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAACCAGTTCTGAAGCCAAATATCTCAGCTGGGGGTTCAAGCCTAG  609

seq1  GAATCAGTTTTCTGATCTTAAAGTCAAAGTTCCATCCTGCTGCTACCCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGTTTTCTGATCTTAAAGTCAAAGTTCCATCCTGCTGCTACCCTG  659

seq1  GCTCTTGGCATTGCCCTTATTTTGTAGAGGGAGGGAGAGAAACAAGGCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGGCATTGCCCTTATTTTGTAGAGGGAGGGAGAGAAACAAGGCAA  709

seq1  AGTGGTAGCCTTCAGCATCTTCAGACACCAAAGCTGATGGACATGTGGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAGCCTTCAGCATCTTCAGACACCAAAGCTGATGGACATGTGGAA  759

seq1  TAACAGTAAGGCTGTTCTTTTTTTTTTTTTCATAAGATTTATGTTTCATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTAAGGCTGTTCTTTTTTTTTTTTTCATAAGATTTATGTTTCATT  809

seq1  ATTGGTGGGTTGATTGTGTGTGTGTGTGTGTGTCTGTGAATTGCCACATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGGGTTGATTGTGTGTGTGTGTGTGTGTCTGTGAATTGCCACATT  859

seq1  GGGGTGAGGGTAGGGGAGGTTCTCATAAGGACCAAAAGAGTGTATCAGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGGGTAGGGGAGGTTCTCATAAGGACCAAAAGAGTGTATCAGAT  909

seq1  TTCTTGGAGCTGGTTATAGGTCGTTATGAACCAGCCTTGTTGTGAACGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGAGCTGGTTATAGGTCGTTATGAACCAGCCTTGTTGTGAACGTA  959

seq1  GGCACTAGAAACCAAACTCAAGTTCCAGTATGTGTTCTTAACCTCTGAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAGAAACCAAACTCAAGTTCCAGTATGTGTTCTTAACCTCTGAGC  1009

seq1  TTCCTCTCCAGTCCAAATGGGACTGTTTTGAAGGGAGAATAGTTATGTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCCAGTCCAAATGGGACTGTTTTGAAGGGAGAATAGTTATGTGT  1059

seq1  GGCTAATGTTTGCCTCTGGCTAGGACTAGCCTCATAGATTCTTATCCAGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATGTTTGCCTCTGGCTAGGACTAGCCTCATAGATTCTTATCCAGC  1109

seq1  CTGCTCAGTCAGACACTCCTGGGTTTCCTCTCTTCTAGTTTTCAAAAGAT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGTCAGACACTCCTGGGTTTCCTCTCTTCTAGTTTTCAAAAGAT  1159

seq1  AAGAAATCAATCCCCTGCCAATTCTGTTTCCTTTGAATTC  1237
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCAATCCCCTGCCAATTCTGTTTCCTTTGAATTC  1199