BAC Information

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BAC

Clone NameB6Ng01-109A01
Chromosome18 (Build37)
Map Location 74,248,016 - 74,414,890
singlet/doubletdoublet
Overlap gene2810433K01Rik, Cxxc1, EG435570
Upstream geneLOC100042955, Rkhd2, Smad4, Elac1, Me2, Mro, Mapk4
Downstream geneMbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181, Dym, LOC628356, EG667777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109A01.bB6Ng01-109A01.g
ACCDH916037DH916038
length1,116587
definitionDH916037|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A01, 5' end.DH916038|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,413,767 - 74,414,890)(74,248,016 - 74,248,602)
sequence
gaattcagacacagccagcagacaaagacatagacaaagacagaatctta
cctccaagagggatctccaagaaatggagtggccacaaaattttgtaatg
agcccccaactgaaagacccccgtttcagggagaccctcactcaagtccc
gggctctcgttcttgatgcaatatcgcaaatcagcatgctgaagccgagc
tcataacccgtacagggtcagaggagatcgactcccagcagttgcagtca
acagtttttaaagaataaactgtaaagtgaggggaagataggaccacaaa
gaatggggaagttgaataaacatctgtaagtatggggatggtgaataaca
gctcatctctcatggaaaggttacaggctatctttggcaaacattctcag
tcccttaaagaatggggaagttgagtatacatcgtaaaaatggggatggt
gaattacagctcatctctcacactgagggtgaaagaataaagaactccat
gctgggcttcgtttctagggatctaagaaacacattgagttggggtctta
cacatgcacgcaaacacacacacacacacacacacacacacacacacaga
gtaaataacaataacattttaaatattttataagactgatgcacctttta
atttttttttatggaaaagcctgagatgctgtaagagcattgaatcagtg
attctgatgggagctcagaggtctagaatgctgagagacttgtggacagt
aactgctgtactcagaaaatttcatgtggaaatgaagactgtattggaaa
ttagagtagaggtcactcatgttagatcctgttgggttttttttattttt
attttatgtttttacttatcctgagactttgagagtaaatttttaagtaa
tggactcatttatttggtggcagccatttcagaaattaatacatttggcc
gaaaacagggctatttgatggaaggcttttagcaggttaaagtgaaaatt
ggtagaaaggtctaggaacttgcagctttctcaaggtctcttataagcag
aagttgtggttgctgagaatcccaagacatttaataggaactgttcattt
gctcgagacattaaga
gaattcagggagtggatcgtccaccccatccaactcaatcttgcagacac
ttcagtgcttcagtgcgtgtaggtgatccaagtcaccacccctggtaggg
gacagagaaacattaagttctggaaattcctatcattagagaggggtgaa
gaggggatgaagaaagtgatagatacttgtcaccatctaacattgcaatg
agatgtgataattggtcagatcttgggctgaagagatttctcagccgtta
gagcactggctgctcttgcagttcccagcacccacatgacaggtaacagc
agcagatttcaactttcctaatgctgcaaccctttattacagttccccat
gttgtggtgacccccaaccatacaattattttgttatgacttcataactg
taattttgctactgtgatctaagaaatgagaaacaggttgggtttgatat
cagctcagagaattaaagtcatagtttggtggcagtgtagataagataat
agaacacatacatgcaatatgaacatggaaaggaaaatactagtggagta
gaagggtgcagagggtgggtaggggcatgaagaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_74413767_74414890
seq2: B6Ng01-109A01.b_47_1162 (reverse)

seq1  TCTTATTGTCTCAATGCAAATGAACAGTTCCTTTTAAATGGCTTTGGTAT  50
      ||||| |||||| | ||||||||||||||||| ||||||| | |||| ||
seq2  TCTTAATGTCTCGA-GCAAATGAACAGTTCCTATTAAATGTC-TTGGGAT  48

seq1  CTTCAGAAACCACAACTTCCTGCTTTATAAG-GACCTTTGGGAGAAGCCT  99
        |||| ||||||||||| |||| ||||||| ||||||   |||||  ||
seq2  TCTCAGCAACCACAACTT-CTGC-TTATAAGAGACCTT---GAGAAAGCT  93

seq1  GCAAGTTTCCTAGGCCTTTCTACCAATTTTCACTTTAAACCTGGCTAAAA  149
      ||||| ||||||| |||||||||||||||||||||| ||||| |||||||
seq2  GCAAG-TTCCTAGACCTTTCTACCAATTTTCACTTT-AACCT-GCTAAAA  140

seq1  GCC-TCCATC-AATAGCCCTGTTATCGGCCAAATGTATTAATTTCTTGAA  197
      ||| |||||| |||||||||||| ||||||||||||||||||||| ||||
seq2  GCCTTCCATCAAATAGCCCTGTTTTCGGCCAAATGTATTAATTTC-TGAA  189

seq1  ATTGCTGCCACCAAATAAATGAGTCCATTACTTTAAAATTTACTCTCAAA  247
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGGCTGCCACCAAATAAATGAGTCCATTACTTAAAAATTTACTCTCAAA  239

seq1  GTCTCAGGATATGTAAAAACATAAAATAAAAATAAAAAAAACCCAACAGG  297
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGATAAGTAAAAACATAAAATAAAAATAAAAAAAACCCAACAGG  289

seq1  ATCTAACATGAGTGACCTCTACTCTAATTTCCAATACAGTCTTCATTTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACATGAGTGACCTCTACTCTAATTTCCAATACAGTCTTCATTTCC  339

seq1  ACATGAAATTTTCTGAGTACAGCAGTTACTGTCCACAAGTCTCTCAGCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAATTTTCTGAGTACAGCAGTTACTGTCCACAAGTCTCTCAGCAT  389

seq1  TCTAGACCTCTGAGCTCCCATCAGAATCACTGATTCAATGCTCTTACAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACCTCTGAGCTCCCATCAGAATCACTGATTCAATGCTCTTACAGC  439

seq1  ATCTCAGGCTTTTCCATAAAAAAAAATTAAAAGGTGCATCAGTCTTATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGCTTTTCCATAAAAAAAAATTAAAAGGTGCATCAGTCTTATAA  489

seq1  AATATTTAAAATGTTATTGTTATTTACTCTGTGTGTGTGTGTGTGTGTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAAAATGTTATTGTTATTTACTCTGTGTGTGTGTGTGTGTGTGT  539

seq1  GTGTGTGTGTGTGTTTGCGTGCATGTGTAAGACCCCAACTCAATGTGTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTTTGCGTGCATGTGTAAGACCCCAACTCAATGTGTTT  589

seq1  CTTAGATCCCTAGAAACGAAGCCCAGCATGGAGTTCTTTATTCTTTCACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATCCCTAGAAACGAAGCCCAGCATGGAGTTCTTTATTCTTTCACC  639

seq1  CTCAGTGTGAGAGATGAGCTGTAATTCACCATCCCCATTTTTACGATGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTGAGAGATGAGCTGTAATTCACCATCCCCATTTTTACGATGTA  689

seq1  TACTCAACTTCCCCATTCTTTAAGGGACTGAGAATGTTTGCCAAAGATAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAACTTCCCCATTCTTTAAGGGACTGAGAATGTTTGCCAAAGATAG  739

seq1  CCTGTAACCTTTCCATGAGAGATGAGCTGTTATTCACCATCCCCATACTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAACCTTTCCATGAGAGATGAGCTGTTATTCACCATCCCCATACTT  789

seq1  ACAGATGTTTATTCAACTTCCCCATTCTTTGTGGTCCTATCTTCCCCTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTTTATTCAACTTCCCCATTCTTTGTGGTCCTATCTTCCCCTCA  839

seq1  CTTTACAGTTTATTCTTTAAAAACTGTTGACTGCAACTGCTGGGAGTCGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGTTTATTCTTTAAAAACTGTTGACTGCAACTGCTGGGAGTCGA  889

seq1  TCTCCTCTGACCCTGTACGGGTTATGAGCTCGGCTTCAGCATGCTGATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTGACCCTGTACGGGTTATGAGCTCGGCTTCAGCATGCTGATTT  939

seq1  GCGATATTGCATCAAGAACGAGAGCCCGGGACTTGAGTGAGGGTCTCCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATATTGCATCAAGAACGAGAGCCCGGGACTTGAGTGAGGGTCTCCCT  989

seq1  GAAACGGGGGTCTTTCAGTTGGGGGCTCATTACAAAATTTTGTGGCCACT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGGGGGTCTTTCAGTTGGGGGCTCATTACAAAATTTTGTGGCCACT  1039

seq1  CCATTTCTTGGAGATCCCTCTTGGAGGTAAGATTCTGTCTTTGTCTATGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTTGGAGATCCCTCTTGGAGGTAAGATTCTGTCTTTGTCTATGT  1089

seq1  CTTTGTCTGCTGGCTGTGTCTGAATTC  1124
      |||||||||||||||||||||||||||
seq2  CTTTGTCTGCTGGCTGTGTCTGAATTC  1116

seq1: chr18_74248016_74248602
seq2: B6Ng01-109A01.g_66_652

seq1  GAATTCAGGGAGTGGATCGTCCACCCCATCCAACTCAATCTTGCAGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAGTGGATCGTCCACCCCATCCAACTCAATCTTGCAGACAC  50

seq1  TTCAGTGCTTCAGTGCGTGTAGGTGATCCAAGTCACCACCCCTGGTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCTTCAGTGCGTGTAGGTGATCCAAGTCACCACCCCTGGTAGGG  100

seq1  GACAGAGAAACATTAAGTTCTGGAAATTCCTATCATTAGAGAGGGGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAAACATTAAGTTCTGGAAATTCCTATCATTAGAGAGGGGTGAA  150

seq1  GAGGGGATGAAGAAAGTGATAGATACTTGTCACCATCTAACATTGCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGATGAAGAAAGTGATAGATACTTGTCACCATCTAACATTGCAATG  200

seq1  AGATGTGATAATTGGTCAGATCTTGGGCTGAAGAGATTTCTCAGCCGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGATAATTGGTCAGATCTTGGGCTGAAGAGATTTCTCAGCCGTTA  250

seq1  GAGCACTGGCTGCTCTTGCAGTTCCCAGCACCCACATGACAGGTAACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGGCTGCTCTTGCAGTTCCCAGCACCCACATGACAGGTAACAGC  300

seq1  AGCAGATTTCAACTTTCCTAATGCTGCAACCCTTTATTACAGTTCCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATTTCAACTTTCCTAATGCTGCAACCCTTTATTACAGTTCCCCAT  350

seq1  GTTGTGGTGACCCCCAACCATACAATTATTTTGTTATGACTTCATAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTGACCCCCAACCATACAATTATTTTGTTATGACTTCATAACTG  400

seq1  TAATTTTGCTACTGTGATCTAAGAAATGAGAAACAGGTTGGGTTTGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGCTACTGTGATCTAAGAAATGAGAAACAGGTTGGGTTTGATAT  450

seq1  CAGCTCAGAGAATTAAAGTCATAGTTTGGTGGCAGTGTAGATAAGATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGAGAATTAAAGTCATAGTTTGGTGGCAGTGTAGATAAGATAAT  500

seq1  AGAACACATACATGCAATATGAACATGGAAAGGAAAATACTAGTGGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACATACATGCAATATGAACATGGAAAGGAAAATACTAGTGGAGTA  550

seq1  GAAGGGTGCAGAGGGTGGGTAGGGGCATGAAGATGGG  587
      ||||||||||||||||||||||||||||||||| |||
seq2  GAAGGGTGCAGAGGGTGGGTAGGGGCATGAAGAAGGG  587