BAC Information

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BAC

Clone NameB6Ng01-109E02
Chromosome4 (Build37)18 (Build37)
Map Location 24,421,538 - 24,422,53734,286,427 - 34,286,479
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383998, LOC100040464, LOC623873, LOC664973
Downstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109E02.bB6Ng01-109E02.g
ACCDH916211DH916212
length1,007210
definitionDH916211|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E02, 5' end.DH916212|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,421,538 - 24,422,537)(34,286,427 - 34,286,479)
sequence
gaattcttccccttctaatgaaagcagctcctaatttcactgtagttaca
caatatacttcgtatgttttcaacctttttttagcttttgtgaatgaaat
gcagagacttatacacactatacaaatgttctaccactatacttcactgg
tagccttcaatcctttttaaatagataaaatttgtttcatgattctgaat
ataatctggtttcatgttccatgttttctttttaattgtataattttact
gttagcgtagtcatatgcatcaattagattcaactgggagctagtactat
ccaaatcttttatagccgtattaattttctattgtcaattattatcaatt
gcagagacatttcaattttctaattaagattgttaggtggatgtggtgat
gaatgcttgtagtctaagctacttgagaggttaagacaagaagactagga
aattgggggcagctggacaaaataccagcatttcatctttacaaaacaat
attatttgaatatttctgttgtaacagtattatgttatattaataaatat
ataatagctatttctatctatggaagcttatacttaagttcttaacattt
ctatatcttgtcaaaattaagataaaaataattacaattttgtctgattc
aaagaagagtctctaacttctctttagttcttttcatttctaacctggac
tacatacacttgataggctacacccttgctttgcgctttggtttgttttg
gccgacaggagtgaaacatgggatgtggttttactcctttcagtgtttcc
cccacttgtctgtggtgggacagttgtgttttcttgtgaaggcaaccact
gttgtgtgacgattaagttaggtgactgcatcctacaggcacaggtctca
ctcctctctagtaatcccgtgttgatccttacttttctgctcaagaaatg
ataattgtctcttattatctggtggggtgcttagtcatcccattttggga
tccagta
cattcttagaatccaagtaaaaataaaccaggtctgggttcagatactct
gtcgtcccagtgttgggaagtgacaggaaggcaagcagatcctggtgttt
gctagcaagtcagccccttgtctacttgtgctccaagtcattaagagaat
ctgtcacaaaaagaaaagaaaaggaagagaagggaagggaggggaaggga
agggaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_24421538_24422537
seq2: B6Ng01-109E02.b_50_1056

seq1  GAATTCTTCCCCTTCTAATGAAAGCAGCTCCTAATTTCACTGTAGTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCCTTCTAATGAAAGCAGCTCCTAATTTCACTGTAGTTACA  50

seq1  CAATATACTTCGTATGTTTTCAACCTTTTTTTAGCTTTTGTGAATGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATACTTCGTATGTTTTCAACCTTTTTTTAGCTTTTGTGAATGAAAT  100

seq1  GCAGAGACTTATACACACTATACAAATGTTCTACCACTATACTTCACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACTTATACACACTATACAAATGTTCTACCACTATACTTCACTGG  150

seq1  TAGCCTTCAATCCTTTTTAAATAGATAAAATTTGTTTCATGATTCTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTCAATCCTTTTTAAATAGATAAAATTTGTTTCATGATTCTGAAT  200

seq1  ATAATCTGGTTTCATGTTCCATGTTTTCTTTTTAATTGTATAATTTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGGTTTCATGTTCCATGTTTTCTTTTTAATTGTATAATTTTACT  250

seq1  GTTAGCGTAGTCATATGCATCAATTAGATTCAACTGGGAGCTAGTACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCGTAGTCATATGCATCAATTAGATTCAACTGGGAGCTAGTACTAT  300

seq1  CCAAATCTTTTATAGCCGTATTAATTTTCTATTGTCAATTATTATCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTTTTATAGCCGTATTAATTTTCTATTGTCAATTATTATCAATT  350

seq1  GCAGAGACATTTCAATTTTCTAATTAAGATTGTTAGGTGGATGTGGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACATTTCAATTTTCTAATTAAGATTGTTAGGTGGATGTGGTGAT  400

seq1  GAATGCTTGTAGTCTAAGCTACTTGAGAGGTTAAGACAAGAAGACTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTGTAGTCTAAGCTACTTGAGAGGTTAAGACAAGAAGACTAGGA  450

seq1  AATTGGGGGCAGCTGGACAAAATACCAGCATTTCATCTTTACAAAACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGGGCAGCTGGACAAAATACCAGCATTTCATCTTTACAAAACAAT  500

seq1  ATTATTTGAATATTTCTGTTGTAACAGTATTATGTTATATTAATAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGAATATTTCTGTTGTAACAGTATTATGTTATATTAATAAATAT  550

seq1  ATAATAGCTATTTCTATCTATGGAAGCTTATACTTAAGTTCTTAACATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCTATTTCTATCTATGGAAGCTTATACTTAAGTTCTTAACATTT  600

seq1  CTATATCTTGTCAAAATTAAGATAAAAATAATTACAATTTTGTCTGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCTTGTCAAAATTAAGATAAAAATAATTACAATTTTGTCTGATTC  650

seq1  AAAGAAGAGTCTCTAACTTCTCTTTAGTTCTTTTCATTTCTAACCTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAGTCTCTAACTTCTCTTTAGTTCTTTTCATTTCTAACCTGGAC  700

seq1  TACATACACTTGATAGGCTACACCCTTGCTTTGCGCTTTGGTTTGTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACACTTGATAGGCTACACCCTTGCTTTGCGCTTTGGTTTGTTTTG  750

seq1  GCCGACAGGAGTGAAACATGGGATGTGG-TTTACTCCTTTCAGTGTTTCC  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCCGACAGGAGTGAAACATGGGATGTGGTTTTACTCCTTTCAGTGTTTCC  800

seq1  CCCACTTGTCTGTGGTGGGACAGTTGTGTTTGTCTGTGAAGGCAACCACT  849
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  CCCACTTGTCTGTGGTGGGACAGTTGTGTTTTCTTGTGAAGGCAACCACT  850

seq1  GTTGTGTGACGA-TAAGTTAGGTGACTGCATCCTACAGGCACAGGTCTCA  898
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTGACGATTAAGTTAGGTGACTGCATCCTACAGGCACAGGTCTCA  900

seq1  CTCCTCTCTAGTAAT-CCGTGTTGATCCTTACTTTTCTGCTCAAG-AATG  946
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  CTCCTCTCTAGTAATCCCGTGTTGATCCTTACTTTTCTGCTCAAGAAATG  950

seq1  ATAATTGTCTC-TATTAGCTG--TGGGTGCCTAGTCATCCCATTTTGGGA  993
      ||||||||||| ||||| |||   |||||| |||||||||||||||||||
seq2  ATAATTGTCTCTTATTATCTGGTGGGGTGCTTAGTCATCCCATTTTGGGA  1000

seq1  TCCAGTA  1000
      |||||||
seq2  TCCAGTA  1007

seq1: chr18_34286427_34286479
seq2: B6Ng01-109E02.g_229_281 (reverse)

seq1  TCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCTTTCCTTTTCTTTTCTT  50
      ||||||||||||||||||| ||||||||||||  ||||||||||||||||
seq2  TCCCTTCCCTTCCCTTCCCCTCCCTTCCCTTCTCTTCCTTTTCTTTTCTT  50

seq1  TTT  53
      |||
seq2  TTT  53