BAC Information

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BAC

Clone NameB6Ng01-110B17
Chromosome18 (Build37)
Map Location 36,469,325 - 36,659,357
singlet/doubletdoublet
Overlap gene0610010O12Rik, Pfdn1
Upstream geneSil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura
Downstream geneHbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110B17.bB6Ng01-110B17.g
ACCDH916825DH916826
length1,0831,086
definitionDH916825|Mus musculus domesticus DNA, BAC clone: B6Ng01-110B17, 5' end.DH916826|Mus musculus domesticus DNA, BAC clone: B6Ng01-110B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,469,325 - 36,470,420)(36,658,271 - 36,659,357)
sequence
gaattctcttcctttagcaggttgtggtggtacgtgcctgtaatcccaac
acctaggtagaggaaggaggatcagaaatttgaagtacactgggcagtgg
tggcgcacgccttttaatcctagcacttgggaggcagaggtaagtggatt
tctgagttcgagggcagcctggtctacagagtgagttccaggacagccag
ggctatacagagaaatcctgtctcgaaaaaccaaaaaacaaacaaaaaaa
acaaaaaacaaaaaaaagaattcttgagttcaaggccagcctgtgctgtt
taagatcctgtcttaaaaggagtgtgggagtaggtaggaaattcttcctg
attttaaatgaggttaaaatgaggctcagctacatttaaaataaatgtag
ggtctttagttagactcaaaaagcaaagtcatggggctggaagatggctc
agtggttaaaagcactggctgctcttccagaggttccaagttcaattccc
agcacccacatgtctcacagctgtctgtaactccagtttcagggggatcc
aacaccctcacacaggcatacatgccggcaaaataccaattcacataaaa
caaaaaactaacagaaaccaggggctggagagttcagcagttaagtgtga
ttactgctcctctaatggacctgaagtcagttctcagcacccacgtctag
tgactcacagccggccatctgtgcttctaattcaaagaatctagtgtcct
cgtctggtctctgtggacactacatatatggcatatacaagcacacatgc
caaaaaaaaataactccttcttcggaggggtgacataaagtggggcagtc
gatgggtttaaagtcttcagcagcagccatgtttcaggcagaatgactta
gatggcaagcatgtctacagctaacagccagcctccatccagctggaggg
aaaccacctggagcctccccttgcagctttagtctctctacttttttact
gtgcaagagacctggtctcctggaccctgaaatgaatcagccgatactgg
atccatttctttgagcttccacttttgtcgtgt
gaattctatcaggctagatatctctgtctctgtccctctgtctctctgct
accctctctctttctatgaaagagtctctctatgaagccctggctgtcct
ctatgtaaactaggttggccacaaactcaaagagattctcctgactctgc
ctcctgattgctgggattaaaggcatgtgctaccatgcctggccttggtt
ttcttatatccagaaacaatgtaacaaagaaatcatttggaaaaagattg
agtgactcaagactggtgatgcaagcctgtaatcccggaaatcgggagat
agagtcgagaagatcaagaatttaagaccatccccaactacataatgagt
tttcattatttgagaccaggtcttgtacctccctatgtagcctaggctgg
cctcaaattctctggcctgtccaaggtgctaatttgtgacacatctagga
ctgaaactcaggccctttgccagtcccttgcttttctttaaaaaaacaaa
tgatgctttttcagtcactgcctcacattttaatgtcaaagtgaccctcc
taagtattgggggacctaagcagccatgggacagcaagtctgtccagaca
tgtcatttcatcgagaacagtggggcctccgagggtggcaatctttgctg
ctgtaattcacttcagcctcattcactcagcaaatatttgtggaggcctc
cttaccacttgccaaatgagacgtctaatctaaaggagaaggcatcttga
gtcagtggcgggagggtgcattttggagcaaggacactcattaattcaca
ttttaaaatggacatttagaggatgtcaaagctctaattttgtccctgaa
gaatcaatcactttaatcagttgaataacggtgacactgggccaacataa
tgtgcacaaagaaataaaaatagtttcagaaattcgtatttgggaacaag
tgatactcgggcattagggggacagattagtttatatggggtgctgctgg
agggagcatttctctgaaaagatacgactcacggaaacagggggagtcag
ctatgttgaagcttgagttaaagatagcttccgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36469325_36470420
seq2: B6Ng01-110B17.b_47_1129

seq1  GAATTCTCTTCCTTTAGCAGGTTGTGGTGGTACGTGCCTGTAATCCCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCTTTAGCAGGTTGTGGTGGTACGTGCCTGTAATCCCAAC  50

seq1  ACCTAGGTAGAGGAAGGAGGATCAGAAATTTGAAGTACACTGGGCAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGTAGAGGAAGGAGGATCAGAAATTTGAAGTACACTGGGCAGTGG  100

seq1  TGGCGCACGCCTTTTAATCCTAGCACTTGGGAGGCAGAGGTAAGTGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCACGCCTTTTAATCCTAGCACTTGGGAGGCAGAGGTAAGTGGATT  150

seq1  TCTGAGTTCGAGGGCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCGAGGGCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAG  200

seq1  GGCTATACAGAGAAATCCTGTCTCGAAAAACCAAAAAACAAACAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATACAGAGAAATCCTGTCTCGAAAAACCAAAAAACAAACAAAAAAA  250

seq1  ACAAAAAACAAAAAAAAGAATTCTTGAGTTCAAGGCCAGCCTGTGCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACAAAAAAAAGAATTCTTGAGTTCAAGGCCAGCCTGTGCTGTT  300

seq1  TAAGATCCTGTCTTAAAAGGAGTGTGGGAGTAGGTAGGAAATTCTTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCCTGTCTTAAAAGGAGTGTGGGAGTAGGTAGGAAATTCTTCCTG  350

seq1  ATTTTAAATGAGGTTAAAATGAGGCTCAGCTACATTTAAAATAAATGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATGAGGTTAAAATGAGGCTCAGCTACATTTAAAATAAATGTAG  400

seq1  GGTCTTTAGTTAGACTCAAAAAGCAAAGTCATGGGGCTGGAAGATGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTAGTTAGACTCAAAAAGCAAAGTCATGGGGCTGGAAGATGGCTC  450

seq1  AGTGGTTAAAAGCACTGGCTGCTCTTCCAGAGGTTCCAAGTTCAATTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTAAAAGCACTGGCTGCTCTTCCAGAGGTTCCAAGTTCAATTCCC  500

seq1  AGCACCCACATGTCTCACAGCTGTCTGTAACTCCAGTTTCAGGGGGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCACATGTCTCACAGCTGTCTGTAACTCCAGTTTCAGGGGGATCC  550

seq1  AACACCCTCACACAGGCATACATGCCGGCAAAATACCAATTCACATAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTCACACAGGCATACATGCCGGCAAAATACCAATTCACATAAAA  600

seq1  CAAAAAACTAACAGAAACCAGGGGCTGGAGAGTTCAGCAGTTAAGTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACTAACAGAAACCAGGGGCTGGAGAGTTCAGCAGTTAAGTGTGA  650

seq1  TTACTGCTCCTCTAATGGACCTGAAGTCAGTTCTCAGCACCCACGTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTCCTCTAATGGACCTGAAGTCAGTTCTCAGCACCCACGTCTAG  700

seq1  TGACTCACAGCCGGCCATCTGTGCTTCTAATTCCAAGAATCTAGTGTCCT  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGACTCACAGCCGGCCATCTGTGCTTCTAATTCAAAGAATCTAGTGTCCT  750

seq1  CGTCTGGTCTCTGTGGACACTACATATATGGCATATACAAGCACACATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGGTCTCTGTGGACACTACATATATGGCATATACAAGCACACATGC  800

seq1  CAAAAAAAAATAACTCCTTCTTCGGAGGGGTGACAATAAAGTGGGGCAGT  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAAAAAAAAATAACTCCTTCTTCGGAGGGGTGAC-ATAAAGTGGGGCAGT  849

seq1  CGATGGG-TTAAAGTCTTCAGCAGCAGCCATGTTTCAGGCAGAATGACTT  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGGTTTAAAGTCTTCAGCAGCAGCCATGTTTCAGGCAGAATGACTT  899

seq1  AGAATGGCAAGCATGTCTACAGCTAACAGCCAGCCTCCATCCAGCTGGAG  949
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-ATGGCAAGCATGTCTACAGCTAACAGCCAGCCTCCATCCAGCTGGAG  948

seq1  GGAAACCCACCCTGAGCCCTCCCCCTTGCAGCTTTAGTCCTCTCTACTCT  999
      ||||| |||||  |||||   ||||||||||||||||| ||||||||| |
seq2  GGAAA-CCACCTGGAGCC--TCCCCTTGCAGCTTTAGT-CTCTCTACT-T  993

seq1  TTTTACTGTGCAAAGAGGACCCTGTCTC--TGACCCTGACATAGATACAG  1047
      ||||||||||| |||| ||||  |||||   |||||||| || ||  |||
seq2  TTTTACTGTGC-AAGA-GACCTGGTCTCCTGGACCCTGAAAT-GAATCAG  1040

seq1  CTCGATACTGGATCCCATTTCTTTGGAGCTTTCCACTTTGTGTCCGTGT  1096
      | ||||||||||| |||||||||| |||| ||||||||| ||| |||||
seq2  C-CGATACTGGAT-CCATTTCTTT-GAGC-TTCCACTTT-TGT-CGTGT  1083

seq1: chr18_36658271_36659357
seq2: B6Ng01-110B17.g_69_1154 (reverse)

seq1  GCTCTGAAGCCTATTTTTAACTCAGGCTTC-ACATAGCTG-CTCCCCCTT  48
      |||| |||| |||| ||||||||| ||||| ||||||||| ||||||| |
seq2  GCTCGGAAG-CTATCTTTAACTCAAGCTTCAACATAGCTGACTCCCCC-T  48

seq1  GTCTCGGGTGAGTCGTTATCTTTTCAGAGAATTGCT-CCTTCAGCAGCAC  97
      || ||  |||||||| ||||||||||||||| |||| ||| |||||||||
seq2  GTTTC-CGTGAGTCG-TATCTTTTCAGAGAAATGCTCCCTCCAGCAGCAC  96

seq1  CCCATATAAACTAATTCTGTCCCCACTAATGCCCGGAGTATCACTTGTTC  147
      |||||||||||||| ||||||||| ||||||||| |||||||||||||||
seq2  CCCATATAAACTAA-TCTGTCCCC-CTAATGCCC-GAGTATCACTTGTTC  143

seq1  CAAAATTACGAATTTCTGAAACTA-TTTTATTTCTTTGTGCACATATTGT  196
      | ||| |||||||||||||||||| ||||||||||||||||||||  |||
seq2  CCAAA-TACGAATTTCTGAAACTATTTTTATTTCTTTGTGCACATTATGT  192

seq1  TGGCCCAGTGTCACCGTTATTC-ACTGAT--AAGTGATTGATTCTCCAGG  243
      |||||||||||||||||||||| ||||||  |||||||||||||| ||||
seq2  TGGCCCAGTGTCACCGTTATTCAACTGATTAAAGTGATTGATTCTTCAGG  242

seq1  GACAAAATTAGAGC-TTGACATCCTCTAAATGTCCATTTTTAAAATGTGA  292
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  GACAAAATTAGAGCTTTGACATCCTCTAAATGTCCA-TTTTAAAATGTGA  291

seq1  ATTAATGAGTGTCCTTGCTCCAAAATGCACCCTCCCGCCACTGACTCAAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGAGTGTCCTTGCTCCAAAATGCACCCTCCCGCCACTGACTCAAG  341

seq1  ATGCCTTCTCCTTTAGATTAGACGTCTCATTTGGCAAGTGGTAAGGAGGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCTCCTTTAGATTAGACGTCTCATTTGGCAAGTGGTAAGGAGGC  391

seq1  CTCCACAAATATTTGCTGAGTGAATGAGGCTGAAGTGAATTACAGCAGCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAAATATTTGCTGAGTGAATGAGGCTGAAGTGAATTACAGCAGCA  441

seq1  AAGATTGCCACCCTCGGAGGCCCCACTGTTCTCGATGAAATGACATGTCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGCCACCCTCGGAGGCCCCACTGTTCTCGATGAAATGACATGTCT  491

seq1  GGACAGACTTGCTGTCCCATGGCTGCTTAGGTCCCCCAATACTTAGGAGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACTTGCTGTCCCATGGCTGCTTAGGTCCCCCAATACTTAGGAGG  541

seq1  GTCACTTTGACATTAAAATGTGAGGCAGTGACTGAAAAAGCATCATTTGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTGACATTAAAATGTGAGGCAGTGACTGAAAAAGCATCATTTGT  591

seq1  TTTTTTAAAGAAAAGCAAGGGACTGGCAAAGGGCCTGAGTTTCAGTCCTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAGAAAAGCAAGGGACTGGCAAAGGGCCTGAGTTTCAGTCCTA  641

seq1  GATGTGTCACAAATTAGCACCTTGGACAGGCCAGAGAATTTGAGGCCAGC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCACAAATTAGCACCTTGGACAGGCCAGAGAATTTGAGGCCAGC  691

seq1  CTAGGCTACATAGGGAGGTACAAGACCTGGTCTCAAATAATGAAAACTCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTACATAGGGAGGTACAAGACCTGGTCTCAAATAATGAAAACTCA  741

seq1  TTATGTAGTTGGGGATGGTCTTAAATTCTTGATCTTCTCGACTCTATCTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGTTGGGGATGGTCTTAAATTCTTGATCTTCTCGACTCTATCTC  791

seq1  CCGATTTCCGGGATTACAGGCTTGCATCACCAGTCTTGAGTCACTCAATC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATTTCCGGGATTACAGGCTTGCATCACCAGTCTTGAGTCACTCAATC  841

seq1  TTTTTCCAAATGATTTCTTTGTTACATTGTTTCTGGATATAAGAAAACCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAAATGATTTCTTTGTTACATTGTTTCTGGATATAAGAAAACCA  891

seq1  AGGCCAGGCATGGTAGCACATGCCTTTAATCCCAGCAATCAGGAGGCAGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGGCATGGTAGCACATGCCTTTAATCCCAGCAATCAGGAGGCAGA  941

seq1  GTCAGGAGAATCTCTTTGAGTTTGTGGCCAACCTAGTTTACATAGAGGAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGAATCTCTTTGAGTTTGTGGCCAACCTAGTTTACATAGAGGAC  991

seq1  AGCCAGGGCTTCATAGAGAGACTCTTTCATAGAAAGAGAGAGGGTAGCAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTTCATAGAGAGACTCTTTCATAGAAAGAGAGAGGGTAGCAG  1041

seq1  AGAGACAGAGGGACAGAGACAGAGATATCTAGCCTGATAGAATTC  1087
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGGGACAGAGACAGAGATATCTAGCCTGATAGAATTC  1086