BAC Information

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BAC

Clone NameB6Ng01-111I18
Chromosome18 (Build37)
Map Location 4,349,460 - 4,350,431
singlet/doubletsinglet
Overlap geneMap3k8
Upstream geneCul2, EG621501, Bambi, LOC100039273, LOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909
Downstream genePapd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil, Zfp438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111I18.bB6Ng01-111I18.g
ACCDH917862DH917863
length1,208969
definitionDH917862|Mus musculus domesticus DNA, BAC clone: B6Ng01-111I18, 5' end.DH917863|Mus musculus domesticus DNA, BAC clone: B6Ng01-111I18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctttgtatcctgagatgcaatgctgacagtttgtgatgagcaat
gaggagggagctaaagtctcggttgtgttttgagtacccaggttgggagc
tcactgaagaagttgggacagacactggatgataagttcttcccttaaca
gattgaggcataaaaaaaaagacaaatttggacattgactagacaatgta
aagtttatattacttatttattaaagatgtatgaatgcctatgtgcatgt
atgtgtgtgtttgtttatctatgcatatatctatagaggccagaggatat
tggattccttggagctggggttatagccagttgtgagctaccccttgcat
gtacatgctggaaatgcaatgttgttctgcaagaacaaccaagatccttt
aaaaaaaaatacagtctttctgtgtaaccctgagtggcctgaaacttact
atgaagaccaggctggcctctaagtcatagagatctatatgcctctgtct
cccaagtgctgaacaaaggcatgcaccaccatgcctggtctagagcaaca
aatgttgttaaccactgaactacatctccagcctcatgaagtttttgttt
gttttaaaacaaccatgtccatatgggtactgcacagaaagtgactttct
ttatttatattactgcatggttcagccattatatcttcctctttgatatc
agagtgatagctattctttaagcctgtgtcacagaatgaaaacctgcgga
gcagggttggagaggttgtcccatgatgaggagcacttgctgctcttgca
gagggcccaaccctgctttgattcatagtatccattttgggtgactcaag
accacttgtagttaactgttgcagagatgtttgatcacactgtgaacccc
aaaattgtattatttactgaaaaaaatgtctctagttgtgatgcggttca
gcccttagcacacaaattatttcaacttggctggaataaaacattgcact
tagtaaacaactttaatcccagcaaatgaggtaagttagtttgtagaaga
agcacccattgttttaaatgataatctattattgaagtgcgataaatgac
atcgaaggaagattctatgggattgagagtatgtccactcctccaagaag
aaaggcctcttaaggcatctaggaagacggaaagggttgggatttaccat
tgtgaacg
gaattcaagtggacagtgccaagttcaaagggaccttagaaaatctttag
tccagcttgctttgcagggaaaacctgagatgcttgggaggcactgactc
tggcatctgctttagctactgaaaacaaactttcactaaacccaaacaca
gcagagagcagtccaggtctctctgaagacagaggtttctgctttttata
attactgaccttgtacagcttcattgtacagctcaagatggctgtggctt
taaagaaaaagtggtttgaaagaaaatgaaccacttgactgaaattcagg
aactaactaggtaagcaagctaagtcccaagagagaagcaagcatgtaaa
acagcttacttggagggagggtgtgaaacggagggagggtgtgaaacagt
aagaagatcagtgtgtggggaaatctggtgggaagaaattaaacagctct
atagaaggggacaggagctgggatctatacgtgccaaagataaacaagta
tcagaaaggtgactcattgatctgtgagtcatagcaccctcctgacacct
gaatttcttttttaaaatagcacaaagcacacatcttgagggtcccagaa
agctaacttaatacctatatctggagaggctttagaaggagaaaagagcc
caggaaaaccaaatctgctataagcgagccacagggtgaagttcaactga
cttcaccagccaaagtgacacttcagtcccacaagatcaggtgctacact
taggaaatgtagatgacaagagaagtcaagcaagccgataaaagtgacaa
taaaagtggtactgtccctctgggtcctgagataactctgctcccctaca
agtgagaaaaaattagaagcactactagatgtagcagatttcaaagcctg
tctgacttaggctcttcttgaagaattgtcaggtccattaaaacccagga
cctggcaagtgctacagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_4349460_4350431
seq2: B6Ng01-111I18.g_67_1035

seq1  GAATTCAAGTGGACAGTGCCAAGTTCAAAGGGACCTTAGAAAATCTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGGACAGTGCCAAGTTCAAAGGGACCTTAGAAAATCTTTAG  50

seq1  TCCAGCTTGCTTTGCAGGGAAAACCTGAGATGCTTGGGAGGCACTGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTGCTTTGCAGGGAAAACCTGAGATGCTTGGGAGGCACTGACTC  100

seq1  TGGCATCTGCTTTAGCTACTGAAAACAAACTTTCACTAAACCCAAACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTGCTTTAGCTACTGAAAACAAACTTTCACTAAACCCAAACACA  150

seq1  GCAGAGAGCAGTCCAGGTCTCTCTGAAGACAGAGGTTTCTGCTTTTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGCAGTCCAGGTCTCTCTGAAGACAGAGGTTTCTGCTTTTTATA  200

seq1  ATTACTGACCTTGTACAGCTTCATTGTACAGCTCAAGATGGCTGTGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGACCTTGTACAGCTTCATTGTACAGCTCAAGATGGCTGTGGCTT  250

seq1  TAAAGAAAAAGTGGTTTGAAAGAAAATGAACCACTTGACTGAAATTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAAGTGGTTTGAAAGAAAATGAACCACTTGACTGAAATTCAGG  300

seq1  AACTAACTAGGTAAGCAAGCTAAGTCCCAAGAGAGAAGCAAGCATGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTAGGTAAGCAAGCTAAGTCCCAAGAGAGAAGCAAGCATGTAAA  350

seq1  ACAGCTTACTTGGAGGGAGGGTGTGAAACGGAGGGAGGGTGTGAAACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTACTTGGAGGGAGGGTGTGAAACGGAGGGAGGGTGTGAAACAGT  400

seq1  AAGAAGATCAGTGTGTGGGGAAATCTGGTGGGAAGAAATTAAACAGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGATCAGTGTGTGGGGAAATCTGGTGGGAAGAAATTAAACAGCTCT  450

seq1  ATAGAAGGGGACAGGAGCTGGGATCTATACGTGCCAAAGATAAACAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGGGGACAGGAGCTGGGATCTATACGTGCCAAAGATAAACAAGTA  500

seq1  TCAGAAAGGTGACTCATTGATCTGTGAGTCATAGCACCCTCCTGACACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGGTGACTCATTGATCTGTGAGTCATAGCACCCTCCTGACACCT  550

seq1  GAATTTCTTTTTTAAAATAGCACAAAGCACACATCTTGAGGGTCCCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTTTTTTAAAATAGCACAAAGCACACATCTTGAGGGTCCCAGAA  600

seq1  AGCTAACTTAATACCTATATCTGGAGAGGCTTTAGAAGGAGAAAAGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACTTAATACCTATATCTGGAGAGGCTTTAGAAGGAGAAAAGAGCC  650

seq1  CAGGAAAACCAAATCTGCTATAAGCGAGCCACA-GGTGAAGTTCAACTGA  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGGAAAACCAAATCTGCTATAAGCGAGCCACAGGGTGAAGTTCAACTGA  700

seq1  CTTCACCAGCCAAAGTGACACTTCAGTCCCACAAGATCAGGTGCTACACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCAGCCAAAGTGACACTTCAGTCCCACAAGATCAGGTGCTACACT  750

seq1  TAGGAAATGTAGATGACAAGAGAAGTCAAGCAAGCCGATAAAAAGTGACA  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAGGAAATGTAGATGACAAGAGAAGTCAAGCAAGCCGAT-AAAAGTGACA  799

seq1  ATAAAAAGTGGTACTGTCCCTCTGGGTCCTGAGATAACTCTGCTCCCCTA  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-AAAAGTGGTACTGTCCCTCTGGGTCCTGAGATAACTCTGCTCCCCTA  848

seq1  CAAGTGAGAAAAAATAAG-AGCACCTACTAGATGTAAGCAGATTTCAAAG  898
      ||||||||||||||| || |||| ||||||||||| ||||||||||||||
seq2  CAAGTGAGAAAAAATTAGAAGCA-CTACTAGATGT-AGCAGATTTCAAAG  896

seq1  CCTGTCTGACTTAAGCCTCTCTGGAAGATATGTCAGGTCCATAAAAGCAC  948
      ||||||||||||| ||   ||| |||||  |||||||||||| ||| | |
seq2  CCTGTCTGACTTAGGCTCTTCTTGAAGAATTGTCAGGTCCATTAAAACCC  946

seq1  AGGACCTCGGCAAGTGCTACAGTG  972
      ||||||| ||||||||||||||||
seq2  AGGACCT-GGCAAGTGCTACAGTG  969