BAC Information

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BAC

Clone NameB6Ng01-112F10
Chromosome18 (Build37)
Map Location 27,550,731 - 27,650,123
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665977
Downstream geneEG665646, EG271505, EG625997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112F10.bB6Ng01-112F10.g
ACCDH918429DH918430
length1,1261,172
definitionDH918429|Mus musculus domesticus DNA, BAC clone: B6Ng01-112F10, 5' end.DH918430|Mus musculus domesticus DNA, BAC clone: B6Ng01-112F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,550,731 - 27,551,886)(27,648,956 - 27,650,123)
sequence
gaattccaaagattgggccactgggtttggatagatttttttctttggaa
tttgtagctaggatgcaaggaagattttgtttgctatatagggttcaggg
tcattgctggatacatcaagcaaaagtctctttttcctccctcccatgcc
ctgtctatgccctctgagatgtaaaagaaagcattttcgctctgctttcc
tggaggttgttaattcacatgcaggggggaaaatgtaggtttccattttc
tgccaagctcttaatcaaggtgattttctgaaaacgcaatggcagaaaat
aagctcttttattttgagaccaacaatagtttttacaatgttctgcaagg
ctgaaaccctccttaaaatgtcggggagacaaaacccgctcccacctgaa
aggcctcttcacttgccttgaaaggatttttttttaaagctattcccctt
aagctgctttttctttctgtgcaacttcccaatcccattcacaaactgtt
gccatggtaaataattatatcacagatgaaatgtgtacacttccttttca
tagctggaagagaaattgtggagggaagggggaaaaatcaaaatccttta
aaattacaggggagatagcagaggaaagattgccgcctcgttaacataat
tagctccatgaattataaattggtattagaacttgctcttcatgacaaaa
ggagtaattatatttactcatgtaaaattaaacaataccaaaaaattaat
gggactcaccagaagctctcttgacattatcataaaattcagagatctga
atatcctacaatctgaagtgatttaagcagcataagctttaatactgctc
aaatttgctatgtagaatatatctcttggctatttataatttaaatctta
tgtttaatattcactggaaatatacataaaacacacacgcgcatgtgcac
gcatgggcacacaacacacacatacacatgcacggggacccaccatacac
acacacacacatcacacaccacacacaacaacatcaatagcaatacaatg
ggtcttctagactgagcaagaacagacactcttaagcccatagacaggca
agggcataacttcaagcatctaaaat
gaattccacattgttctacaatgacagtgagaatcatgaaaaataaataa
aatattgttatgattggcttccaggaaggaactaaaatatggtggatgag
tatcacctggagatgcccattagtatcccaataccacagaaagaatgaac
gtctgctttctagttaagaagattttaggcaaaagaatgcataagtattt
tcttagtacaatttgccaactaaactaaaggaactatgttccatcagtca
agttcagcaatctgcataaaagagagagtcaggttaggtttttccataga
ttgaaacatggtgcctgccttctttttgtggtagtagtttgtgcttatgg
agtcagaagagtccaagtgtctgatacaagacaaaaagtactcaccaaaa
gcaatagcattgttaaagacctcactgcctaattctcgtagctatcaata
cactgcatctacttggcaagtatctgtgggtgtaagtttttatttcttct
cccataaatgcatgaaatttgtatttctatgaatatttaagtgttagcgc
tataaaagtgatatgtttttaaagaatatttcatctgaaaattttgttta
tgaacaggatgatgaaaatgaaaataatttgaaaaacataacaagcctgt
aactattaccttttgtaattgcttttgtgattttaaagacatactaaatt
gattattttcaagtagaaacttgagtcacttctttaggtactctgtctac
atattaattgtgctaacttagaatgtggtgctttgcatggtaaattcatg
gcttttttgcagttcctaaaatcttaagttggagaaattacattttctgg
ttcaatgtgatatttactaacgtgtcttggctattttccagtagcttttg
tttcaggaaaataaggtaatttgggttttacttcttcccagcacaggaca
tgcttggaatcactgatgtatagtcaagatagaagtcaatctatatttac
acagcaaaattatttgagtacttgcatgtagatctattttttctagcatt
agaacaaaaaagctatccctttatgctacacctaatttattctatgggaa
tatccataacatattacttcctcttggtggcaggcaatcttttgctggtc
taaatacaaactttccatatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27550731_27551886
seq2: B6Ng01-112F10.b_48_1173

seq1  GAATTCCAAAGATTGGGCCACTGGGTTTGGATAGATTTTTTTCTTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGATTGGGCCACTGGGTTTGGATAGATTTTTTTCTTTGGAA  50

seq1  TTTGTAGCTAGGATGCAAGGAAGATTTTGTTTGCTATATAGGGTTCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGCTAGGATGCAAGGAAGATTTTGTTTGCTATATAGGGTTCAGGG  100

seq1  TCATTGCTGGATACATCAAGCAAAAGTCTCTTTTTCCTCCCTCCCATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTGGATACATCAAGCAAAAGTCTCTTTTTCCTCCCTCCCATGCC  150

seq1  CTGTCTATGCCCTCTGAGATGTAAAAGAAAGCATTTTCGCTCTGCTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTATGCCCTCTGAGATGTAAAAGAAAGCATTTTCGCTCTGCTTTCC  200

seq1  TGGAGGTTGTTAATTCACATGCAGGGGGGAAAATGTAGGTTTCCATTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTTGTTAATTCACATGCAGGGGGGAAAATGTAGGTTTCCATTTTC  250

seq1  TGCCAAGCTCTTAATCAAGGTGATTTTCTGAAAACGCAATGGCAGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGCTCTTAATCAAGGTGATTTTCTGAAAACGCAATGGCAGAAAAT  300

seq1  AAGCTCTTTTATTTTGAGACCAACAATAGTTTTTACAATGTTCTGCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTTTTATTTTGAGACCAACAATAGTTTTTACAATGTTCTGCAAGG  350

seq1  CTGAAACCCTCCTTAAAATGTCGGGGAGACAAAACCCGCTCCCACCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCCTCCTTAAAATGTCGGGGAGACAAAACCCGCTCCCACCTGAA  400

seq1  AGGCCTCTTCACTTGCCTTGAAAGGATTTTTTTTTAAAGCTATTCCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCTTCACTTGCCTTGAAAGGATTTTTTTTTAAAGCTATTCCCCTT  450

seq1  AAGCTGCTTTTTCTTTCTGTGCAACTTCCCAATCCCATTCACAAACTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTTTTTCTTTCTGTGCAACTTCCCAATCCCATTCACAAACTGTT  500

seq1  GCCATGGTAAATAATTATATCACAGATGAAATGTGTACACTTCCTTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGTAAATAATTATATCACAGATGAAATGTGTACACTTCCTTTTCA  550

seq1  TAGCTGGAAGAGAAATTGTGGAGGGAAGGGGGAAAAATCAAAATCCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGAAGAGAAATTGTGGAGGGAAGGGGGAAAAATCAAAATCCTTTA  600

seq1  AAATTACAGGGGAGATAGCAGAGGAAAGATTGCCGCCTCGTTAACATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACAGGGGAGATAGCAGAGGAAAGATTGCCGCCTCGTTAACATAAT  650

seq1  TAGCTCCATGAATTATAAATTGGTATTAGAACTTGCTCTTCATGACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCATGAATTATAAATTGGTATTAGAACTTGCTCTTCATGACAAAA  700

seq1  GGAGTAATTATATTTACTCATGTAAAATTAAACAATACCAAAAAATTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAATTATATTTACTCATGTAAAATTAAACAATACCAAAAAATTAAT  750

seq1  GGGACTCACCAGAAGCTCTCTTGACATTATCATAAAATTCAGAGATCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCACCAGAAGCTCTCTTGACATTATCATAAAATTCAGAGATCTGA  800

seq1  ATATCCTACAATCTGAAGTGATTTAAGCAGCATAAGCTTTAATACTGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTACAATCTGAAGTGATTTAAGCAGCATAAGCTTTAATACTGCTC  850

seq1  AAATTTGCTATGTAGAAATATATCTCTTGGCTATTTTATAATTTAAATCT  900
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  AAATTTGCTATGTAG-AATATATCTCTTGGCTA-TTTATAATTTAAATCT  898

seq1  TATGTTTAATATTCACTGGAAATATACAT-AAACACACACGCGCATGTGC  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATGTTTAATATTCACTGGAAATATACATAAAACACACACGCGCATGTGC  948

seq1  ACGCATGGGCACACAAACACACACATACACATGCACGGGGACACACACAT  999
      |||||||||||||| ||||||||||||||||||||||||||| ||| |||
seq2  ACGCATGGGCACAC-AACACACACATACACATGCACGGGGACCCAC-CAT  996

seq1  ACACACACCACCACCACCACCACCACCACCAACAACAACAACAACAATCA  1049
      ||||||| |||   || |||   ||||||  ||||||||| |        
seq2  ACACACA-CACACACATCAC--ACACCACACACAACAACATC--------  1035

seq1  AATAGCCAATAACCAAAATGGGTTCCTTCTAGACTGAGCCACAGAACAGA  1099
      ||||| ||||    | |||||||  ||||||||||||||   ||||||||
seq2  AATAG-CAAT----ACAATGGGT--CTTCTAGACTGAGC--AAGAACAGA  1076

seq1  CAACTCTTAAGCCCAATAGGACAGGGCAAGGGCATAACTTTCAAATGCAT  1149
      | |||||||||||| ||| |||| |||||||||||||| |||||  ||||
seq2  C-ACTCTTAAGCCC-ATA-GACA-GGCAAGGGCATAAC-TTCAA--GCAT  1119

seq1  CTAAAAT  1156
      |||||||
seq2  CTAAAAT  1126

seq1: chr18_27648956_27650123
seq2: B6Ng01-112F10.g_69_1240 (reverse)

seq1  GCATATGGAAAGTTTGATATTAGACACAGCAGAAGAATGCCTGCCA-CAA  49
      ||||||||||||||||   |||||| ||||| |||| ||||||||| |||
seq2  GCATATGGAAAGTTTGTATTTAGAC-CAGCAAAAGATTGCCTGCCACCAA  49

seq1  GA-GAAGTAATATGTTATGGATAT--CCATAGAATAA--TA-GTGTAAGC  93
      || |||||||||||||||||||||  |||||||||||  || |||| |||
seq2  GAGGAAGTAATATGTTATGGATATTCCCATAGAATAAATTAGGTGT-AGC  98

seq1  ATAAAGGGATATGCTTTTTTGTTCTAATGCTAG-AAAAATAGATTCTACA  142
      ||||||||||| ||||||||||||||||||||| ||||||||| ||||||
seq2  ATAAAGGGATA-GCTTTTTTGTTCTAATGCTAGAAAAAATAGA-TCTACA  146

seq1  TTGCAAGTACTCAAATAATTTTGCTGTGTAAATATAGATTGACTTCTATC  192
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGCAAGTACTCAAATAATTTTGCTGTGTAAATATAGATTGACTTCTATC  195

seq1  TTGACTATACATCAGTGATTCCAAGCATGTCCTGTGCTGGGAAGAAGTAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTATACATCAGTGATTCCAAGCATGTCCTGTGCTGGGAAGAAGTAA  245

seq1  AA-CCAAATTACCTTATTTTCCTGAAACAAAAGCTACTGGAAAATAGCCA  291
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAATTACCTTATTTTCCTGAAACAAAAGCTACTGGAAAATAGCCA  295

seq1  AGACACGTTAGTAAATATCACATTGAACCAGAAAATGTAATTTCTCCAAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACGTTAGTAAATATCACATTGAACCAGAAAATGTAATTTCTCCAAC  345

seq1  TTAAGATTTTAGGAACTGCAAAAAAGCCATGAATTTACCATGCAAAGCAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTTTAGGAACTGCAAAAAAGCCATGAATTTACCATGCAAAGCAC  395

seq1  CACATTCTAAGTTAGCACAATTAATATGTAGACAGAGTACCTAAAGAAGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTAAGTTAGCACAATTAATATGTAGACAGAGTACCTAAAGAAGT  445

seq1  GACTCAAGTTTCTACTTGAAAATAATCAATTTAGTATGTCTTTAAAATCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAGTTTCTACTTGAAAATAATCAATTTAGTATGTCTTTAAAATCA  495

seq1  CAAAAGCAATTACAAAAGGTAATAGTTACAGGCTTGTTATGTTTTTCAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAATTACAAAAGGTAATAGTTACAGGCTTGTTATGTTTTTCAAA  545

seq1  TTATTTTCATTTTCATCATCCTGTTCATAAACAAAATTTTCAGATGAAAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCATTTTCATCATCCTGTTCATAAACAAAATTTTCAGATGAAAT  595

seq1  ATTCTTTAAAAACATATCACTTTTATAGCGCTAACACTTAAATATTCATA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAAAAACATATCACTTTTATAGCGCTAACACTTAAATATTCATA  645

seq1  GAAATACAAATTTCATGCATTTATGGGAGAAGAAATAAAAACTTACACCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACAAATTTCATGCATTTATGGGAGAAGAAATAAAAACTTACACCC  695

seq1  ACAGATACTTGCCAAGTAGATGCAGTGTATTGATAGCTACGAGAATTAGG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATACTTGCCAAGTAGATGCAGTGTATTGATAGCTACGAGAATTAGG  745

seq1  CAGTGAGGTCTTTAACAATGCTATTGCTTTTGGTGAGTACTTTTTGTCTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGTCTTTAACAATGCTATTGCTTTTGGTGAGTACTTTTTGTCTT  795

seq1  GTATCAGACACTTGGACTCTTCTGACTCCATAAGCACAAACTACTACCAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGACACTTGGACTCTTCTGACTCCATAAGCACAAACTACTACCAC  845

seq1  AAAAAGAAGGCAGGCACCATGTTTCAATCTATGGAAAAACCTAACCTGAC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGGCAGGCACCATGTTTCAATCTATGGAAAAACCTAACCTGAC  895

seq1  TCTCTCTTTTATGCAGATTGCTGAACTTGACTGATGGAACATAGTTCCTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTTATGCAGATTGCTGAACTTGACTGATGGAACATAGTTCCTT  945

seq1  TAGTTTAGTTGGCAAATTGTACTAAGAAAATACTTATGCATTCTTTTGCC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAGTTGGCAAATTGTACTAAGAAAATACTTATGCATTCTTTTGCC  995

seq1  TAAAATCTTCTTAACTAGAAAGCAGACGTTCATTCTTTCTGTGGTATTGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTTCTTAACTAGAAAGCAGACGTTCATTCTTTCTGTGGTATTGG  1045

seq1  GATACTAATGGGCATCTCCAGGTGATACTCATCCACCATATTTTAGTTCC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTAATGGGCATCTCCAGGTGATACTCATCCACCATATTTTAGTTCC  1095

seq1  TTCCTGGAAGCCAATCATAACAATATTTTATTTATTTTTCATGATTCTCA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAAGCCAATCATAACAATATTTTATTTATTTTTCATGATTCTCA  1145

seq1  CTGTCATTGTAGAACAATGTGGAATTC  1168
      |||||||||||||||||||||||||||
seq2  CTGTCATTGTAGAACAATGTGGAATTC  1172