BAC Information

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BAC

Clone NameB6Ng01-113E08
Chromosome18 (Build37)
Map Location 10,005,319 - 10,133,821
singlet/doubletdoublet
Overlap geneUsp14, Rock1
Upstream geneFzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1
Downstream geneLOC100039978, LOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113E08.bB6Ng01-113E08.g
ACCDH919108DH919109
length1,1001,064
definitionDH919108|Mus musculus domesticus DNA, BAC clone: B6Ng01-113E08, 5' end.DH919109|Mus musculus domesticus DNA, BAC clone: B6Ng01-113E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,132,710 - 10,133,821)(10,005,319 - 10,006,382)
sequence
gaattcactggatttgttcagaatcactgtgaccatatttgttgttctta
acaccatagtttcagtgttgtattcataactagtcagtagtttacccttt
ctatttagggcaaatgtagattgccagattgactaacactttcataacaa
ctcattatacacattactggtaactagaaatggaattaatgtaaatgtca
ctaagtgttaaaattaagaccgacataaaagttagatttagatgtcttag
aaatattttatgaagactttagttgtcttctcttgacatataaaattttg
tcactcagtttaaaagtgagctgtaagagagacttaacactcactgtttc
tgtaatttatacacacagctggaaggaaaatgctaccttttttctttggt
tgtaaaggcttatgtatttcacaacagaatagctagaaatgtgtagttat
cgttttgaaagatatattaaaaggaagcattacatgcaaactagtgtgtc
agcatttatttttaattcaattgcattaataaagtaggtaatataaataa
ttttggaagaggacattaaaatgtagatcaagttctttgccctatgtact
gctccatttcatatctgtacaattagcttttgtgtacttttatcacagtt
tctaccatagttaaatcagtcagatattttggtcaaaaaataatgaaata
tttatattcactaaaatgatttgttatgtaatctcaatctggttgccttg
atttttgtctctggaattactatgcagtcatcatattagcagctagaatt
tagaaatggtggcatctagtgagtactataaaacaaaaacatggatttgt
gcactcactgatatttatataattaggtttgtatatgcagtatatatgtg
caatgtacatttaggtttttttcatgtttgcactttaaaaatatttttgt
tagcacacaaaagtgagtttactgtgctttttccatgtattatcctttgt
attcatctgcaacatcctgtgcttcctactggtccccctcctggggaaac
tgttctccttggtcctcatgtcagttgttttcattgtcatcatcttgcct

gaattcatgtacattattaatatacgaatttcacataactgaaactactc
tatgagataaattaaagagacacagaaaaacatgttcttaagaaaaaagt
aatgaatatccttaagatatatatacatttatctaaagctcaaaatccct
gaaagactattttattattttctaattctcacaactataagtttttaggc
atagaaacctgaggcctgcagtgccaatcagccaactatgcttttagtga
caattacttcttaaaaattataaagaccatctatacaaagcttggctcaa
aaaggatacgtagtttcaaactcaacaccaaaatattgatcaattaagct
tttctttttagaaggtgtcaccgctggtgcagatgaagaatccgtctaca
aaattaaaaagaaaattctagttttactttttgtagatctcaacacaatc
ctaattactaatgcatacttaagattttgtttggttggttggatggtttt
tcgagacagtttctctgtgtagccctggctgtcctggaacttgtgaaatc
ctgtgacaaagatggggacagggcctggagagatgggctcagtttgtaaa
gtactggccctgcaagcaagaggacctgaatccaatgcccagaactcata
tttaaaaagcaagaacagtagtgactgcttgcaatctcagaagcgtatcc
actcaagccacaaccacgcccccaccaatcatcaaggtgggagcatggca
gtataaaaaggttaaaaacacataaaatacatttgttcatggatggaggc
atatgattaacagaaagaaatgacaattataaaggtacccagccaaagct
ggactcaatgacataaagtaaacataattgtatctgaaaagagagataaa
ctctctaactctggagttgagggctaaacaatactcattcatcaattgac
aaggtcatccaggcgagagatttatctgtagaccaggctggcctcgaact
tcagaaacctggctgctcttgcctcccagggctggggataaaggcgtgcg
ccaccactgcccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_10132710_10133821
seq2: B6Ng01-113E08.b_48_1147 (reverse)

seq1  AGGCAAGGGAAGCAAAGAATGATGACAATGAAATACAACTGACATGAGAA  50
      |||||||           ||||||||||||||| |||||||||||||| |
seq2  AGGCAAG-----------ATGATGACAATGAAA-ACAACTGACATGAGGA  38

seq1  CCAAGGAGAACAGTATTCACAGGAGGGGGACCAGTAAGGAAGCACAGGAT  100
      |||||||||||||| | | |||||||||||||||| ||||||||||||||
seq2  CCAAGGAGAACAGTTTCCCCAGGAGGGGGACCAGT-AGGAAGCACAGGAT  87

seq1  GTTGCAGATGAATACAAAGGATAATACATGGAAACAGCACAGTAAAACTC  150
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  GTTGCAGATGAATACAAAGGATAATACATGGAAAAAGCACAGT-AAACTC  136

seq1  ACTTTTGTGTGCTAACAAAAATATTTTTAAAGTGCAAACATGAAAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTGTGCTAACAAAAATATTTTTAAAGTGCAAACATGAAAAAAAC  186

seq1  CTAAATGTACATTGCACATATATACTGCATATAC-AACCTAATTATATAA  249
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTAAATGTACATTGCACATATATACTGCATATACAAACCTAATTATATAA  236

seq1  ATATCAGTGAGTGCACAAATCCATGTTTTTGTTTTATAGTACTCACTAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGTGAGTGCACAAATCCATGTTTTTGTTTTATAGTACTCACTAGA  286

seq1  TGCCACCATTTCT-AATTCTAGCTGCTAATATGATGACTGCATAGTAATT  348
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGCCACCATTTCTAAATTCTAGCTGCTAATATGATGACTGCATAGTAATT  336

seq1  CCAGAGACAAAAATCAAGGCAACCAGATTGAGATTACATAACAAATCATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACAAAAATCAAGGCAACCAGATTGAGATTACATAACAAATCATT  386

seq1  TTAGTGAATATAAATATTTCATTATTTTTTGACCAAAATATCTGACTGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAATATAAATATTTCATTATTTTTTGACCAAAATATCTGACTGAT  436

seq1  TTAACTATGGTAGAAACTGTGATAAAAGTACACAAAAGCTAATTGTACAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATGGTAGAAACTGTGATAAAAGTACACAAAAGCTAATTGTACAG  486

seq1  ATATGAAATGGAGCAGTACATAGGGCAAAGAACTTGATCTACATTTTAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAATGGAGCAGTACATAGGGCAAAGAACTTGATCTACATTTTAAT  536

seq1  GTCCTCTTCCAAAATTATTTATATTACCTACTTTATTAATGCAATTGAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTTCCAAAATTATTTATATTACCTACTTTATTAATGCAATTGAAT  586

seq1  TAAAAATAAATGCTGACACACTAGTTTGCATGTAATGCTTCCTTTTAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAATGCTGACACACTAGTTTGCATGTAATGCTTCCTTTTAATA  636

seq1  TATCTTTCAAAACGATAACTACACATTTCTAGCTATTCTGTTGTGAAATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCAAAACGATAACTACACATTTCTAGCTATTCTGTTGTGAAATA  686

seq1  CATAAGCCTTTACAACCAAAGAAAAAAGGTAGCATTTTCCTTCCAGCTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCCTTTACAACCAAAGAAAAAAGGTAGCATTTTCCTTCCAGCTGT  736

seq1  GTGTATAAATTACAGAAACAGTGAGTGTTAAGTCTCTCTTACAGCTCACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAAATTACAGAAACAGTGAGTGTTAAGTCTCTCTTACAGCTCACT  786

seq1  TTTAAACTGAGTGACAAAATTTTATATGTCAAGAGAAGACAACTAAAGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTGAGTGACAAAATTTTATATGTCAAGAGAAGACAACTAAAGTC  836

seq1  TTCATAAAATATTTCTAAGACATCTAAATCTAACTTTTATGTCGGTCTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAATATTTCTAAGACATCTAAATCTAACTTTTATGTCGGTCTTA  886

seq1  ATTTTAACACTTAGTGACATTTACATTAATTCCATTTCTAGTTACCAGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACACTTAGTGACATTTACATTAATTCCATTTCTAGTTACCAGTA  936

seq1  ATGTGTATAATGAGTTGTTATGAAAGTGTTAGTCAATCTGGCAATCTACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATAATGAGTTGTTATGAAAGTGTTAGTCAATCTGGCAATCTACA  986

seq1  TTTGCCCTAAATAGAAAGGGTAAACTACTGACTAGTTATGAATACAACAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCTAAATAGAAAGGGTAAACTACTGACTAGTTATGAATACAACAC  1036

seq1  TGAAACTATGGTGTTAAGAACAACAAATATGGTCACAGTGATTCTGAACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTATGGTGTTAAGAACAACAAATATGGTCACAGTGATTCTGAACA  1086

seq1  AATCCAGTGAATTC  1112
      ||||||||||||||
seq2  AATCCAGTGAATTC  1100

seq1: chr18_10005319_10006382
seq2: B6Ng01-113E08.g_69_1132

seq1  GAATTCATGTACATTATTAATATACGAATTTCACATAACTGAAACTACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTACATTATTAATATACGAATTTCACATAACTGAAACTACTC  50

seq1  TATGAGATAAATTAAAGAGACACAGAAAAACATGTTCTTAAGAAAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATAAATTAAAGAGACACAGAAAAACATGTTCTTAAGAAAAAAGT  100

seq1  AATGAATATCCTTAAGATATATATACATTTATCTAAAGCTCAAAATCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATATCCTTAAGATATATATACATTTATCTAAAGCTCAAAATCCCT  150

seq1  GAAAGACTATTTTATTATTTTCTAATTCTCACAACTATAAGTTTTTAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACTATTTTATTATTTTCTAATTCTCACAACTATAAGTTTTTAGGC  200

seq1  ATAGAAACCTGAGGCCTGCAGTGCCAATCAGCCAACTATGCTTTTAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAACCTGAGGCCTGCAGTGCCAATCAGCCAACTATGCTTTTAGTGA  250

seq1  CAATTACTTCTTAAAAATTATAAAGACCATCTATACAAAGCTTGGCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACTTCTTAAAAATTATAAAGACCATCTATACAAAGCTTGGCTCAA  300

seq1  AAAGGATACGTAGTTTCAAACTCAACACCAAAATATTGATCAATTAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATACGTAGTTTCAAACTCAACACCAAAATATTGATCAATTAAGCT  350

seq1  TTTCTTTTTAGAAGGTGTCACCGCTGGTGCAGATGAAGAATCCGTCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTAGAAGGTGTCACCGCTGGTGCAGATGAAGAATCCGTCTACA  400

seq1  AAATTAAAAAGAAAATTCTAGTTTTACTTTTTGTAGATCTCAACACAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAAGAAAATTCTAGTTTTACTTTTTGTAGATCTCAACACAATC  450

seq1  CTAATTACTAATGCATACTTAAGATTTTGTTTGGTTGGTTGGATGGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTACTAATGCATACTTAAGATTTTGTTTGGTTGGTTGGATGGTTTT  500

seq1  TCGAGACAGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTTGTGAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACAGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTTGTGAAATC  550

seq1  CTGTGACAAAGATGGGGACAGGGCCTGGAGAGATGGGCTCAGTTTGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACAAAGATGGGGACAGGGCCTGGAGAGATGGGCTCAGTTTGTAAA  600

seq1  GTACTGGCCCTGCAAGCAAGAGGACCTGAATCCAATGCCCAGAACTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGCCCTGCAAGCAAGAGGACCTGAATCCAATGCCCAGAACTCATA  650

seq1  TTTAAAAAGCAAGAACAGTAGTGACTGCTTGCAATCTCAGAAGCGTATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGCAAGAACAGTAGTGACTGCTTGCAATCTCAGAAGCGTATCC  700

seq1  ACTCAAGCCACAACCACGCCCCCACCAATCATCAAGGTGGGAGCATGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGCCACAACCACGCCCCCACCAATCATCAAGGTGGGAGCATGGCA  750

seq1  GTATAAAAAGGTTAAAAACACATAAAATACATTTGTTCATGGATGGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAAGGTTAAAAACACATAAAATACATTTGTTCATGGATGGAGGC  800

seq1  ATATGATTAACAGAAAGAAATGACAATTATAAAGGTACCCAGCCAAAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTAACAGAAAGAAATGACAATTATAAAGGTACCCAGCCAAAGCT  850

seq1  GGACTCAATGACATAAAGTAAACATAATTGTATCTGAAAAGAGAGATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAATGACATAAAGTAAACATAATTGTATCTGAAAAGAGAGATAAA  900

seq1  CTCTCTAACTCTGGAGTTGAGGGCTAAACAATACTCATTCATCAATTGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAACTCTGGAGTTGAGGGCTAAACAATACTCATTCATCAATTGAC  950

seq1  -AGGTCATCCAGGCGAAGAGATTTATCTGTAGACCAGGCTGGCCTCGAAC  999
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGGTCATCCAGGCG-AGAGATTTATCTGTAGACCAGGCTGGCCTCGAAC  999

seq1  -TCAGAAACCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGCGTG  1048
       ||||||||||| ||||   |||||||| || ||||||   |||||||||
seq2  TTCAGAAACCTGGCTGCTCTTGCCTCCC-AGGGCTGGGGATAAAGGCGTG  1048

seq1  CGCCACCACTGCCCAG  1064
      ||||||||||||||||
seq2  CGCCACCACTGCCCAG  1064