BAC Information

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BAC

Clone NameB6Ng01-113M07
Chromosome18 (Build37)
Map Location 31,617,898 - 31,780,033
singlet/doubletdoublet
Overlap geneLOC383420, Slc25a46
Upstream geneEG666111, EG666114, LOC433168, Rit2, EG666130, Syt4
Downstream geneSap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113M07.bB6Ng01-113M07.g
ACCDH919478DH919479
length6901,015
definitionDH919478|Mus musculus domesticus DNA, BAC clone: B6Ng01-113M07, 5' end.DH919479|Mus musculus domesticus DNA, BAC clone: B6Ng01-113M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,779,452 - 31,780,033)(31,617,898 - 31,618,928)
sequence
gaattccaacataaagctcagacctgccctgatgctctttagatcaaagc
ttgaacagggagaataacaaggaaccctttgttgttgttgttctgagatg
aggacttgctgtttagctgaggctagaccagaacttgcagcagttttggc
ttaagcgccccagtgcttggggcacaagcttggtcatcacgcccaagtta
agagcgaatcttgagtgcagaaggagaagagagtgcagcacaggcagaga
gcatcagtaggagagagggaggatctgccaccagggatctcagaaaccag
aagatagtgggctaatagggtcagggtggaaagcatttcaagtgattcct
gtcaatcattttcaccctgtatgtgtatgtccaaaagggaattgtgttgt
ttgtttgtactttgtttatgtggtactgtatatggctgtgttagagagaa
aaatcactcaggagtgggtttaactcatgctctctacaggaatcagttct
tgggcattcttccaaaatgggcagttattagaccacactttcaggcactc
tgtctgattggatgaggtggggggaaggaggatacttaaataatttttaa
aatacacactatgagcctggagagatgtgtcagtggttgagagaacactg
gctgctcttcaagctgtcctgggtggaattcccagcaccc
gaattcattatcagaaaatatcaactagatgaaggaaatgattatatata
aggacataggacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgt
gcgtgcgcgctttaaatttcaaaaaacacaaaatatagatagggtttaaa
tatattaatggcaataatttaagggagagagaatattagttgaattaaaa
cgttttaaattttaaaagcatccaaactttctcatggctgacagaagaaa
gcaaaattcagtaaaaatggagaacaatcaactaatcaaatatacataat
agtatttacaatcaagtgtgagacacagtaaatggagcttgttggctgag
ctatgaaacatctcaaagtattaaagtaccccagtttgtttcataacaaa
aggaacattaagcaaagaaaataataccacaagtaattttaaaaccattg
tttgaaagctgaacaaagttatcaataatttatggtcatagatgaatttc
agtagaaattaggtgcatgaaacagagcagaaaccacctaaaaacagtca
tcacccttcaccccagaatgatttcaaacaatgtaagagtcaccttgcaa
gcatgctcagaaggaaatttaaagaaacatactttaccatgatttttaaa
acagcacagaaaagagatctgatgactctgaagtcattatgcaagaagta
ttaaccttactgagaattcctggtaacacacaaagtcatgaagatatata
aattataattgacacaagacagcagagaaggcagccacttctgatataga
aattgtatacaaacattttttttaaaaatcaatggattttttttttgccc
caatataaaaatcttctgtcccaggtaagattaactgtgataaaattttg
ggaacatgcctcagaggatggcccacacccatgaacggagagtagctcaa
caaactaagtgaatacccaggaccaaaccagtagactgctcttaaacgga
gatgggcctgaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31779452_31780033
seq2: B6Ng01-113M07.b_49_630 (reverse)

seq1  TCCTCCTTCCCCCCACCTCATCCAATCAGACAGAGTGCCTGAAAGTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTCCCCCCACCTCATCCAATCAGACAGAGTGCCTGAAAGTGTGG  50

seq1  TCTAATAACTGCCCATTTTGGAAGAATGCCCAAGAACTGATTCCTGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAACTGCCCATTTTGGAAGAATGCCCAAGAACTGATTCCTGTAGA  100

seq1  GAGCATGAGTTAAACCCACTCCTGAGTGATTTTTCTCTCTAACACAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGAGTTAAACCCACTCCTGAGTGATTTTTCTCTCTAACACAGCCA  150

seq1  TATACAGTACCACATAAACAAAGTACAAACAAACAACACAATTCCCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTACCACATAAACAAAGTACAAACAAACAACACAATTCCCTTTT  200

seq1  GGACATACACATACAGGGTGAAAATGATTGACAGGAATCACTTGAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATACACATACAGGGTGAAAATGATTGACAGGAATCACTTGAAATGC  250

seq1  TTTCCACCCTGACCCTATTAGCCCACTATCTTCTGGTTTCTGAGATCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCCTGACCCTATTAGCCCACTATCTTCTGGTTTCTGAGATCCCT  300

seq1  GGTGGCAGATCCTCCCTCTCTCCTACTGATGCTCTCTGCCTGTGCTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGATCCTCCCTCTCTCCTACTGATGCTCTCTGCCTGTGCTGCAC  350

seq1  TCTCTTCTCCTTCTGCACTCAAGATTCGCTCTTAACTTGGGCGTGATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCCTTCTGCACTCAAGATTCGCTCTTAACTTGGGCGTGATGAC  400

seq1  CAAGCTTGTGCCCCAAGCACTGGGGCGCTTAAGCCAAAACTGCTGCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTGTGCCCCAAGCACTGGGGCGCTTAAGCCAAAACTGCTGCAAGT  450

seq1  TCTGGTCTAGCCTCAGCTAAACAGCAAGTCCTCATCTCAGAACAACAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTAGCCTCAGCTAAACAGCAAGTCCTCATCTCAGAACAACAACA  500

seq1  ACAAAGGGTTCCTTGTTATTCTCCCTGTTCAAGCTTTGATCTAAAGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGTTCCTTGTTATTCTCCCTGTTCAAGCTTTGATCTAAAGAGCA  550

seq1  TCAGGGCAGGTCTGAGCTTTATGTTGGAATTC  582
      ||||||||||||||||||||||||||||||||
seq2  TCAGGGCAGGTCTGAGCTTTATGTTGGAATTC  582

seq1: chr18_31617898_31618928
seq2: B6Ng01-113M07.g_68_1082

seq1  GAATTCATTATCAGAAAATATCAACTAGATGAAGGAAATGATTATATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCAGAAAATATCAACTAGATGAAGGAAATGATTATATATA  50

seq1  AGGACATAGGACAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATAGGACAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGT  100

seq1  GCGTGCGCGCTTTAAATTTCAAAAAACACAAAATATAGATAGGGTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGCGCTTTAAATTTCAAAAAACACAAAATATAGATAGGGTTTAAA  150

seq1  TATATTAATGGCAATAATTTAAGGGAGAGAGAATATTAGTTGAATTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAATGGCAATAATTTAAGGGAGAGAGAATATTAGTTGAATTAAAA  200

seq1  CGTTTTAAATTTTAAAAGCATCCAAACTTTCTCATGGCTGACAGAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTAAATTTTAAAAGCATCCAAACTTTCTCATGGCTGACAGAAGAAA  250

seq1  GCAAAATTCAGTAAAAATGGAGAACAATCAACTAATCAAATATACATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTCAGTAAAAATGGAGAACAATCAACTAATCAAATATACATAAT  300

seq1  AGTATTTACAATCAAGTGTGAGACACAGTAAATGGAGCTTGTTGGCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTACAATCAAGTGTGAGACACAGTAAATGGAGCTTGTTGGCTGAG  350

seq1  CTATGAAACATCTCAAAGTATTAAAGTACCCCAGTTTGTTTCATAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAACATCTCAAAGTATTAAAGTACCCCAGTTTGTTTCATAACAAA  400

seq1  AGGAACATTAAGCAAAGAAAATAATACCACAAGTAATTTTAAAACCATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATTAAGCAAAGAAAATAATACCACAAGTAATTTTAAAACCATTG  450

seq1  TTTGAAAGCTGAACAAAGTTATCAATAATTTATGGTCATAGATGAATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGCTGAACAAAGTTATCAATAATTTATGGTCATAGATGAATTTC  500

seq1  AGTAGAAATTAGGTGCATGAAACAGAGCAGAAACCACCTAAAAACAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAATTAGGTGCATGAAACAGAGCAGAAACCACCTAAAAACAGTCA  550

seq1  TCACCCTTCACCCCAGAATGATTTCAAACAATGTAAGAGTCACCTTGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTTCACCCCAGAATGATTTCAAACAATGTAAGAGTCACCTTGCAA  600

seq1  GCATGCTCAGAAGGAAATTTAAAGAAACATAC-TTACCATGATTTTTAAA  649
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCATGCTCAGAAGGAAATTTAAAGAAACATACTTTACCATGATTTTTAAA  650

seq1  ACAGCACAGAAAAGAGATCTGATGACTCTGAAGTCATTATGCAAGAAGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACAGAAAAGAGATCTGATGACTCTGAAGTCATTATGCAAGAAGTA  700

seq1  TTAACCTTACTGAGAATTCCTGGTAACACAAAAAGTCATGAAGATATATA  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTAACCTTACTGAGAATTCCTGGTAACACACAAAGTCATGAAGATATATA  750

seq1  AATTATAATTGACACAAGACAGCAGAGAAGGCAGCCACTTCTGAAATAGA  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATTATAATTGACACAAGACAGCAGAGAAGGCAGCCACTTCTGATATAGA  800

seq1  AATTGTATACAAAACATTTTTTTAAAAAATCAATGGATTTTTTTTTTGCC  849
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  AATTGTATAC-AAACATTTTTTTTAAAAATCAATGGATTTTTTTTTTGCC  849

seq1  CACAATAGAAAAAATCTTCAGTCCCAGGGTAAGATTTACTTGTTGATAAA  899
      | |||||  |||||||||| |||||| ||||||||| |||   |||| ||
seq2  C-CAATA-TAAAAATCTTCTGTCCCA-GGTAAGATTAACT--GTGAT-AA  893

seq1  AATTTTGGGATACATGCCTCAGAGGATGGCCCCACACCCATGAACGGAAG  949
      |||||||||| |||||||||||||||||| ||||||||||||||||| ||
seq2  AATTTTGGGA-ACATGCCTCAGAGGATGG-CCCACACCCATGAACGG-AG  940

seq1  AGAAGCACCAACAAAACTAAGTGGATTACCCAGGACACAAACCAGTAAGA  999
      || |||  |||| ||||||||| || |||||||||| ||||||||| |||
seq2  AGTAGC-TCAAC-AAACTAAGT-GAATACCCAGGAC-CAAACCAGT-AGA  985

seq1  CATGCTCTTAGAAGGGAGATGGGCCTGAGGTC  1031
      | |||||||| || ||||||||||||||||||
seq2  C-TGCTCTTA-AACGGAGATGGGCCTGAGGTC  1015