BAC Information

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BAC

Clone NameB6Ng01-114J12
Chromosome18 (Build37)
Map Location 50,322,207 - 50,464,607
singlet/doubletdoublet
Overlap geneHsd17b4, LOC667233, Gm93
Upstream geneDtwd2, Dmxl1, Tnfaip8, LOC626721
Downstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114J12.bB6Ng01-114J12.g
ACCDH920077DH920078
length1,073569
definitionDH920077|Mus musculus domesticus DNA, BAC clone: B6Ng01-114J12, 5' end.DH920078|Mus musculus domesticus DNA, BAC clone: B6Ng01-114J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,322,207 - 50,323,284)(50,464,033 - 50,464,607)
sequence
gaattcatgatgctcacgtgagcatgtagcttgaagtcagccctgcagct
gtccagataactctattcatcttagcaacttttcctctgagatttttctg
ggcagtaccatgttctgtgctttgatggaggactgtcttgcaaggagagg
acggttttgggtattgtttctacagctctccttagtgtgcgagtgtggga
gcagaaggtaccagctcagcttctgctgttggcattggtaatagatacag
aagctggaagcgttctctgttttcaggagtgtagttttacatgtaagttt
tgctagtctttctttggggttatgatgaatcaaggtagttgctaggttga
tgtgttggctagcccacaccctccttgctatttgaaaagtaagccagggg
gatactgggtgggagagggagaagaaagctattacctctgctgttgctgc
tgagtaggacctgaggtgacgagctgtctagtgtttctgtgtgctgttgc
tgtcaccttctctgtctcttcatgactcactttaaatgcttttgaaatag
attgaatttttagacaaatttggatgggggttggcaccagtgcccggtgg
gcagtctgctacaggttcctggtcacgttcccctttctcctgccaaccac
agagcatggcctctctgctgaaatggaatttaaacaattccaaaacattt
aaacaaattgtttcttaacttattaattaaaagataaatgggtgatttat
tgtgaactatatagataggctgtcgatagaatgaacaaacagaagctgaa
catgaactataacttcgttttgttgtttttctttggtttgacaaggtctt
tctctttgccaccagttaaccttccttcagtaacatcttttctaagtttt
gggataaggtgtttaatttaatggttcatttcctttttcctttgcccacc
agaactttttgaggataagcattgataactttttagaaatggctggtgtg
gttaccagtcacagcctgtcatggcggaggaactgtatctgagggcccta
gccctgtgacatgtgtcacgtac
tccctgggtgtcattagaatatacaagaaactgatataatgctgatttat
aaaattcttcatcctggatatccaggaatttattcagctctttatggttt
ttattattctcatgtattttttcagtgcacataggagttagattgtttgc
aagatgcatctggaaacaatcataataaattaattaagtcattgccaaaa
agataaatatcttgttttatttcagttgcagcttctagatttttgttcat
ataatatgaaagttaaagcaatgctatctagggggatatgtcatgggagg
tatgaggaggaagaagacaaggggtatgggaaatatgtttaaagtatatt
atatacttacataataactatttatatgaacaactatgtttgtctacatc
tccagatgcatctattttcttgcaaatgacataactctcttcttcctgat
aactgaacatattagccagaaaggtcaaggacaccacaagatcatggccc
atagaatcaactaagcaggggccataggagctcacagagactgaagtggc
agacacataccctacatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50322207_50323284
seq2: B6Ng01-114J12.b_43_1115

seq1  GAATTCATGATGCTCACGTGAGCATGTAGCTTGAAGTCAGCCCTGCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATGCTCACGTGAGCATGTAGCTTGAAGTCAGCCCTGCAGCT  50

seq1  GTCCAGATAACTCTATTCATCTTAGCAACTTTTCCTCTGAGATTTTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGATAACTCTATTCATCTTAGCAACTTTTCCTCTGAGATTTTTCTG  100

seq1  GGCAGTACCATGTTCTGTGCTTTGATGGAGGACTGTCTTGCAAGGAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTACCATGTTCTGTGCTTTGATGGAGGACTGTCTTGCAAGGAGAGG  150

seq1  ACGGTTTTGGGTATTGTTTCTACAGCTCTCCTTAGTGTGCGAGTGTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTTTGGGTATTGTTTCTACAGCTCTCCTTAGTGTGCGAGTGTGGGA  200

seq1  GCAGAAGGTACCAGCTCAGCTTCTGCTGTTGGCATTGGTAATAGATACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGGTACCAGCTCAGCTTCTGCTGTTGGCATTGGTAATAGATACAG  250

seq1  AAGCTGGAAGCGTTCTCTGTTTTCAGGAGTGTAGTTTTACATGTAAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAAGCGTTCTCTGTTTTCAGGAGTGTAGTTTTACATGTAAGTTT  300

seq1  TGCTAGTCTTTCTTTGGGGTTATGATGAATCAAGGTAGTTGCTAGGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTCTTTCTTTGGGGTTATGATGAATCAAGGTAGTTGCTAGGTTGA  350

seq1  TGTGTTGGCTAGCCCACACCCTCCTTGCTATTTGAAAAGTAAGCCAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGCTAGCCCACACCCTCCTTGCTATTTGAAAAGTAAGCCAGGGG  400

seq1  GATACTGGGTGGGAGAGGGAGAAGAAAGCTATTACCTCTGCTGTTGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGGGTGGGAGAGGGAGAAGAAAGCTATTACCTCTGCTGTTGCTGC  450

seq1  TGAGTAGGACCTGAGGTGACGAGCTGTCTAGTGTTTCTGTGTGCTGTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGGACCTGAGGTGACGAGCTGTCTAGTGTTTCTGTGTGCTGTTGC  500

seq1  TGTCACCTTCTCTGTCTCTTCATGACTCACTTTAAATGCTTTTGAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTTCTCTGTCTCTTCATGACTCACTTTAAATGCTTTTGAAATAG  550

seq1  ATTGAATTTTTAGACAAATTTGGATGGGGGTTGGCACCAGTGCCCGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTTTTAGACAAATTTGGATGGGGGTTGGCACCAGTGCCCGGTGG  600

seq1  GCAGTCTGCTACAGGTTCCTGGTCACGTTCCCCTTTCTCCTGCCAACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTGCTACAGGTTCCTGGTCACGTTCCCCTTTCTCCTGCCAACCAC  650

seq1  AGAGCATGGCCTCTCTGCTGAAATGGAATTTAAACAATTCCAAAACATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATGGCCTCTCTGCTGAAATGGAATTTAAACAATTCCAAAACATTT  700

seq1  AAACAAATTG-TTCTTAACTTATTAATTAAAAGATAAATGGGTGATTTAT  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTGTTTCTTAACTTATTAATTAAAAGATAAATGGGTGATTTAT  750

seq1  TGTGAACTATATAGATAGGCTGTCGATAGAATGAACAAACAGAAGCTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTATATAGATAGGCTGTCGATAGAATGAACAAACAGAAGCTGAA  800

seq1  CATGAACTATAACTTCGTTTTGTTGTTTTTCTTTGGTTTGACAAGTGTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATGAACTATAACTTCGTTTTGTTGTTTTTCTTTGGTTTGACAAG-GTCT  849

seq1  TTCTTCTTTGCCACCAG-TAACCTTCCTTCAGTAACATCTTTTCTAAGTT  898
      ||| ||||||||||||| |||||||||||||||||||||||||||||| |
seq2  TTC-TCTTTGCCACCAGTTAACCTTCCTTCAGTAACATCTTTTCTAAG-T  897

seq1  TTTGGGAAAAGGTGTTTATTTTAATGGTTCATTTCCTTTTTTCCTTTTGC  948
      ||||||| |||||||||| ||||||||||||||||||||||  | |||||
seq2  TTTGGGATAAGGTGTTTAATTTAATGGTTCATTTCCTTTTT--CCTTTGC  945

seq1  CCACCAG-ACCTTTTGAGGAAAAGCATTGATAAC-TATTAGAAAATGCTG  996
      ||||||| || ||||||||| ||||||||||||| | |||||||  ||||
seq2  CCACCAGAACTTTTTGAGGATAAGCATTGATAACTTTTTAGAAATGGCTG  995

seq1  GTGTGGTTACCAGTCAGCAGCCTGTCAGTGCGGGAGGAACAGTAACAGGA  1046
      |||||||||||||||| |||||||||| ||  |||||||| ||| |  ||
seq2  GTGTGGTTACCAGTCA-CAGCCTGTCA-TGGCGGAGGAACTGTATC-TGA  1042

seq1  GGGCTCTAGCCCTGTGACATGTGTCAGCGTAC  1078
      |||| ||||||||||||||||||||| |||||
seq2  GGGCCCTAGCCCTGTGACATGTGTCA-CGTAC  1073

seq1: chr18_50464033_50464607
seq2: B6Ng01-114J12.g_66_640 (reverse)

seq1  TCATGTAGGGTATGTGTCTGCCACTTCAGTCTCTGTGAGCTCCTATGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGGGTATGTGTCTGCCACTTCAGTCTCTGTGAGCTCCTATGGCC  50

seq1  CCTGCTTAGTTGATTCTATGGGCCATGATCTTGTGGTGTCCTTGACCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTAGTTGATTCTATGGGCCATGATCTTGTGGTGTCCTTGACCTTT  100

seq1  CTGGCTAATATGTTCAGTTATCAGGAAGAAGAGAGTTATGTCATTTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAATATGTTCAGTTATCAGGAAGAAGAGAGTTATGTCATTTGCAA  150

seq1  GAAAATAGATGCATCTGGAGATGTAGACAAACATAGTTGTTCATATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGATGCATCTGGAGATGTAGACAAACATAGTTGTTCATATAAAT  200

seq1  AGTTATTATGTAAGTATATAATATACTTTAAACATATTTCCCATACCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTATGTAAGTATATAATATACTTTAAACATATTTCCCATACCCCT  250

seq1  TGTCTTCTTCCTCCTCATACCTCCCATGACATATCCCCCTAGATAGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTCCTCCTCATACCTCCCATGACATATCCCCCTAGATAGCATT  300

seq1  GCTTTAACTTTCATATTATATGAACAAAAATCTAGAAGCTGCAACTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAACTTTCATATTATATGAACAAAAATCTAGAAGCTGCAACTGAAA  350

seq1  TAAAACAAGATATTTATCTTTTTGGCAATGACTTAATTAATTTATTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAGATATTTATCTTTTTGGCAATGACTTAATTAATTTATTATGA  400

seq1  TTGTTTCCAGATGCATCTTGCAAACAATCTAACTCCTATGTGCACTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCAGATGCATCTTGCAAACAATCTAACTCCTATGTGCACTGAAA  450

seq1  AAATACATGAGAATAATAAAAACCATAAAGAGCTGAATAAATTCCTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATGAGAATAATAAAAACCATAAAGAGCTGAATAAATTCCTGGAT  500

seq1  ATCCAGGATGAAGAATTTTATAAATCAGCATTATATCAGTTTCTTGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGATGAAGAATTTTATAAATCAGCATTATATCAGTTTCTTGTATA  550

seq1  TTCTAATGACACCCAGGGAGAATTC  575
      |||||||||||||||||||||||||
seq2  TTCTAATGACACCCAGGGAGAATTC  575